TCONS_00063490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063490
Unique NameTCONS_00063490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063490 ID=TCONS_00063490|Name=TCONS_00063490|organism=Clytia hemisphaerica|type=transcript|length=394bp
gtTCGATGGGTGGTGTAATGGGATTTCTGAGCCCTCCATCTGAACTTACT
AAATTTCATGATCAGATAGAGTACATATTAAAACAAAAGGGAGACGAGTG
CAGAATGAACTTTGAGACAAAGTTAATTCCCTACAAAGATAATCTTTAAC
ATAACCAGCTCCTAAAGATACAAAAAGAAATGTTACACTTACATTGTGAA
AATAAATCGATGAAGGATGAAATAACTTCACTTATGTCTACTTGTCtaat
tacaaagaaaatttggccTCTATATATACTAGGTCCCTACTCCTAAAATA
AATGTTAATTGCCTGATTACATAATGGATTGGAGTTAATGGCGTTAGCCT
TAGCATATCAAAATAACAAAGtcgtaaaataaaacataaggaAG
Run BLAST on NCBI

transcript from alignment at scaffold_39:145560..145953

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063490 ID=TCONS_00063490|Name=TCONS_00063490|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at scaffold_39:145560..145953 (Clytia hemisphaerica)
CTtccttatgttttattttacgaCTTTGTTATTTTGATATGCTAAGGCTA
ACGCCATTAACTCCAATCCATTATGTAATCAGGCAATTAACATTTATTTT
AGGAGTAGGGACCTAGTATATATAGAggccaaattttctttgtaattaGA
CAAGTAGACATAAGTGAAGTTATTTCATCCTTCATCGATTTATTTTCACA
ATGTAAGTGTAACATTTCTTTTTGTATCTTTAGGAGCTGGTTATGTTAAA
GATTATCTTTGTAGGGAATTAACTTTGTCTCAAAGTTCATTCTGCACTCG
TCTCCCTTTTGTTTTAATATGTACTCTATCTGATCATGAAATTTAGTAAG
TTCAGATGGAGGGCTCAGAAATCCCATTACACCACCCATCGAac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039797XLOC_039797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063490-exon-scaffold_39-1491911889:145560..145953TCONS_00063490-exon-scaffold_39-1491911889:145560..145953Clytia hemisphaericaexon
TCONS_00063490-exon-scaffold_39-1510915933:145560..145953TCONS_00063490-exon-scaffold_39-1510915933:145560..145953Clytia hemisphaericaexon
TCONS_00063490-exon-scaffold_39-1575043694:145560..145953TCONS_00063490-exon-scaffold_39-1575043694:145560..145953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:145560..145953 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.558105	0.692177	0.712266	0	0.258615	0	0.739658	0.0423574	0.169216	0	0	0.255438	31.0885	16.5995	0	0.242146	0.152452	0	100.315	90.579	0.207294	0.575504	1.07684	0.599713	0.205897	1.10255	0.525914	0.280635	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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