TCONS_00063493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063493
Unique NameTCONS_00063493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063493 ID=TCONS_00063493|Name=TCONS_00063493|organism=Clytia hemisphaerica|type=transcript|length=405bp
GCCTGGACAGGTTATAATGATCATGGATCAGGTGGTTCAGAAGAAAATAC
CTTCACATATATCACTGGAATTGAAGGGTATAACCCAGTCTTTGATGATA
CTATCATATTTTCATCTAATACTCAAATTAAAGACTGTGCTGCTCTAGAa
cttgaaaatgatgaaaaattcgAGGTACATAAGTGTGGTGGCAAAGAAAT
CATACATTCCATTTGCAAGTATAATTTTATCCATGGGTCCATCATTTTTG
TAACAGCCCCTCGGTTACCTGATAGAGAATCTACCGAGGGTTTTGTTATC
ATGGAGAATTGGGGTGCAGCAAGAGAAGAGTGTATGGCGAAAGGAGGCGA
TTTGGTCACTATTGGgtcaaggaaaatgaacaattttGTAAAAGACCTTT
TACAA
Run BLAST on NCBI

protein sequence of TCONS_00063493-protein

>TCONS_00063493-protein ID=TCONS_00063493-protein|Name=TCONS_00063493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
AWTGYNDHGSGGSEENTFTYITGIEGYNPVFDDTIIFSSNTQIKDCAALE
LENDEKFEVHKCGGKEIIHSICKYNFIHGSIIFVTAPRLPDRESTEGFVI
MENWGAAREECMAKGGDLVTIGSRKMNNFVKDLLQ
Run BLAST on NCBI

transcript from alignment at scaffold_39:211122..211526

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063493 ID=TCONS_00063493|Name=TCONS_00063493|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at scaffold_39:211122..211526 (Clytia hemisphaerica)
TTGTAAAAGGTCTTTTACaaaattgttcattttccttgacCCAATAGTGA
CCAAATCGCCTCCTTTCGCCATACACTCTTCTCTTGCTGCACCCCAATTC
TCCATGATAACAAAACCCTCGGTAGATTCTCTATCAGGTAACCGAGGGGC
TGTTACAAAAATGATGGACCCATGGATAAAATTATACTTGCAAATGGAAT
GTATGATTTCTTTGCCACCACACTTATGTACCTcgaatttttcatcattt
tcaagtTCTAGAGCAGCACAGTCTTTAATTTGAGTATTAGATGAAAATAT
GATAGTATCATCAAAGACTGGGTTATACCCTTCAATTCCAGTGATATATG
TGAAGGTATTTTCTTCTGAACCACCTGATCCATGATCATTATAACCTGTC
CAGGC

Coding sequence (CDS) from alignment at scaffold_39:211122..211526

>TCONS_00063493 ID=TCONS_00063493|Name=TCONS_00063493|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_39:211122..211526 (Clytia hemisphaerica)
TTGTAAAAGGTCTTTTACaaaattgttcattttccttgacCCAATAGTGA
CCAAATCGCCTCCTTTCGCCATACACTCTTCTCTTGCTGCACCCCAATTC
TCCATGATAACAAAACCCTCGGTAGATTCTCTATCAGGTAACCGAGGGGC
TGTTACAAAAATGATGGACCCATGGATAAAATTATACTTGCAAATGGAAT
GTATGATTTCTTTGCCACCACACTTATGTACCTcgaatttttcatcattt
tcaagtTCTAGAGCAGCACAGTCTTTAATTTGAGTATTAGATGAAAATAT
GATAGTATCATCAAAGACTGGGTTATACCCTTCAATTCCAGTGATATATG
TGAAGGTATTTTCTTCTGAACCACCTGATCCATGATCATTATAACCTGTC
CAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039800XLOC_039800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063493-exon-scaffold_39-1491911889:211122..211526TCONS_00063493-exon-scaffold_39-1491911889:211122..211526Clytia hemisphaericaexon
TCONS_00063493-exon-scaffold_39-1510915933:211122..211526TCONS_00063493-exon-scaffold_39-1510915933:211122..211526Clytia hemisphaericaexon
TCONS_00063493-exon-scaffold_39-1575043694:211122..211526TCONS_00063493-exon-scaffold_39-1575043694:211122..211526Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063493-proteinTCONS_00063493-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:211122..211526 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.43917	2.47117	1.63958	0.601528	0	0	0	0	0.152533	0	0	0	0.120383	0.500077	0.308348	0.220603	0	0.696377	0.384833	0	0	0.256091	1.24525	0.75474	0.777365	1.04067	0	0	1.20543	1.84222
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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