TCONS_00063494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063494
Unique NameTCONS_00063494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063494 ID=TCONS_00063494|Name=TCONS_00063494|organism=Clytia hemisphaerica|type=transcript|length=817bp
CAACGAAATTAAACAGtggtctttcttttgtttcttaaaGCCTTACTGGC
TAATGATTACTTTTCTTTTCACCCGAAGCTAAAGAATTAAGAAATCACTC
CCGAGTCTAGGGAAAGGGTTCTATAGGATTTCTTCCTTTCTTGGGGTGGG
GTTCCAGATACTCTGTAGAATTCCATCGCATGGACCTGTAAGGAAGGTTA
TCTTTTACTGCATACCCCTAATCAAAAGCGGTTTTAAGCTATACCAAGCA
AACAAATAAGGTCCGGGATTCTAAACCATCGGGTGGGCGATAGGACGCAT
CCCCAGTTTGATAACGGAATCCACAAGACCAGGGTGCACTGTCCTCTATA
AGGTGCGAACGCTGTTAAGCAAGATGTAGGAGTGTGTGTGATGAGAGGAG
TGTTGAGAGTTGACGTAGAAAGTTAGAAATATCAGAGTGACGCTGTAGTC
GTGTAACGACTGTCTCTCTTCTCGCGTTTTTGTTTCGAGCTTGGACCGCC
TCGAATCTTTTTCTTGAATGGGAACAAATTAGTGAAAGGTCGGTCCACAC
ATCTTAGATGAGAATTGGCTAGTGTCCCAGCGCGCGGTGAGCCGCCAgtg
gttttttttcatttacctttgTGTTCGATGNTTTTTTTCAGTTAATGCAG
CAAGTGTGTAGAGATTGTTTGATAAACGAAAATTGAAGCCGCTAGACTAC
AGGTGTTTGTAAACGAACAGAACCAAACACCTGTTTAAACAAAAACGAAC
GATGTTTGTATATTAGATCAGAGTTTAATTCTAGATAGACGCTGCTGATC
TAATCGCGTGGGTTGCG
Run BLAST on NCBI

transcript from alignment at scaffold_39:227510..228326

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063494 ID=TCONS_00063494|Name=TCONS_00063494|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at scaffold_39:227510..228326 (Clytia hemisphaerica)
CGCAACCCACGCGATTAGATCAGCAGCGTCTATCTAGAATTAAACTCTGA
TCTAATATACAAACATCGTTCGTTTTTGTTTAAACAGGTGTTTGGTTCTG
TTCGTTTACAAACACCTGTAGTCTAGCGGCTTCAATTTTCGTTTATCAAA
CAATCTCTACACACTTGCTGCATTAACTGAAAAAAANCATCGAACAcaaa
ggtaaatgaaaaaaaaccacTGGCGGCTCACCGCGCGCTGGGACACTAGC
CAATTCTCATCTAAGATGTGTGGACCGACCTTTCACTAATTTGTTCCCAT
TCAAGAAAAAGATTCGAGGCGGTCCAAGCTCGAAACAAAAACGCGAGAAG
AGAGACAGTCGTTACACGACTACAGCGTCACTCTGATATTTCTAACTTTC
TACGTCAACTCTCAACACTCCTCTCATCACACACACTCCTACATCTTGCT
TAACAGCGTTCGCACCTTATAGAGGACAGTGCACCCTGGTCTTGTGGATT
CCGTTATCAAACTGGGGATGCGTCCTATCGCCCACCCGATGGTTTAGAAT
CCCGGACCTTATTTGTTTGCTTGGTATAGCTTAAAACCGCTTTTGATTAG
GGGTATGCAGTAAAAGATAACCTTCCTTACAGGTCCATGCGATGGAATTC
TACAGAGTATCTGGAACCCCACCCCAAGAAAGGAAGAAATCCTATAGAAC
CCTTTCCCTAGACTCGGGAGTGATTTCTTAATTCTTTAGCTTCGGGTGAA
AAGAAAAGTAATCATTAGCCAGTAAGGCtttaagaaacaaaagaaagacc
aCTGTTTAATTTCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039801XLOC_039801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063494-exon-scaffold_39-1491911889:227510..228326TCONS_00063494-exon-scaffold_39-1491911889:227510..228326Clytia hemisphaericaexon
TCONS_00063494-exon-scaffold_39-1510915933:227510..228326TCONS_00063494-exon-scaffold_39-1510915933:227510..228326Clytia hemisphaericaexon
TCONS_00063494-exon-scaffold_39-1575043694:227510..228326TCONS_00063494-exon-scaffold_39-1575043694:227510..228326Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:227510..228326 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.329265	0.227608	0.282674	0.441704	0.472142	0.389217	5.95665	6.76514	2.2022	1.6286	4.86026	2.23558	8.71854	7.76624	3.78577	5.66958	6.00784	9.11547	1.17855	2.52467	2.76501	4.40408	2.17559	1.25257	5.12225	8.29816	1.16225	0.650408	9.28401	7.8862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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