TCONS_00063495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063495
Unique NameTCONS_00063495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063495 ID=TCONS_00063495|Name=TCONS_00063495|organism=Clytia hemisphaerica|type=transcript|length=363bp
GAATTCCTGCGGTATAAATTGGTCCACATAGTCCGTAATTTGCCCACATG
CTTTATAAATTTCCAAGAAATTATGGGACTCGATGCAATTACGACGTGTA
TAGCGACCTGGAAATATATCTTCGCCTTTATCGTATGTGCAGTTAGAAGG
AAAAGGTGTTGACAGTCGTTTAACCAGAGTCTTATCTAGCTTGATTTCGT
AAGCTTTGTAAGGCTCTAGTTCCACTTTCTTGGTAGTATCGACTTCATGG
ACTTGAGGGTCTTGTGGTAGTGCGATGATTTTCTCTTCTTTACCAAGCCA
AGGAGGAGGATGAAAATCCATCAGAATTTCAGCATGACTGTAAACATCTG
ATAAATTCCCTTG
Run BLAST on NCBI

protein sequence of TCONS_00063495-protein

>TCONS_00063495-protein ID=TCONS_00063495-protein|Name=TCONS_00063495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
QGNLSDVYSHAEILMDFHPPPWLGKEEKIIALPQDPQVHEVDTTKKVELE
PYKAYEIKLDKTLVKRLSTPFPSNCTYDKGEDIFPGRYTRRNCIESHNFL
EIYKACGQITDYVDQFIPQEF
Run BLAST on NCBI

transcript from alignment at scaffold_39:258072..258434

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063495 ID=TCONS_00063495|Name=TCONS_00063495|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at scaffold_39:258072..258434 (Clytia hemisphaerica)
CAAGGGAATTTATCAGATGTTTACAGTCATGCTGAAATTCTGATGGATTT TCATCCTCCTCCTTGGCTTGGTAAAGAAGAGAAAATCATCGCACTACCAC AAGACCCTCAAGTCCATGAAGTCGATACTACCAAGAAAGTGGAACTAGAG CCTTACAAAGCTTACGAAATCAAGCTAGATAAGACTCTGGTTAAACGACT GTCAACACCTTTTCCTTCTAACTGCACATACGATAAAGGCGAAGATATAT TTCCAGGTCGCTATACACGTCGTAATTGCATCGAGTCCCATAATTTCTTG GAAATTTATAAAGCATGTGGGCAAATTACGGACTATGTGGACCAATTTAT ACCGCAGGAATTC

Coding sequence (CDS) from alignment at scaffold_39:258072..258434

>TCONS_00063495 ID=TCONS_00063495|Name=TCONS_00063495|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_39:258072..258434 (Clytia hemisphaerica)
CAAGGGAATTTATCAGATGTTTACAGTCATGCTGAAATTCTGATGGATTT
TCATCCTCCTCCTTGGCTTGGTAAAGAAGAGAAAATCATCGCACTACCAC
AAGACCCTCAAGTCCATGAAGTCGATACTACCAAGAAAGTGGAACTAGAG
CCTTACAAAGCTTACGAAATCAAGCTAGATAAGACTCTGGTTAAACGACT
GTCAACACCTTTTCCTTCTAACTGCACATACGATAAAGGCGAAGATATAT
TTCCAGGTCGCTATACACGTCGTAATTGCATCGAGTCCCATAATTTCTTG
GAAATTTATAAAGCATGTGGGCAAATTACGGACTATGTGGACCAATTTAT
ACCGCAGGAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039802XLOC_039802Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063495-exon-scaffold_39-1491911889:258072..258434TCONS_00063495-exon-scaffold_39-1491911889:258072..258434Clytia hemisphaericaexon
TCONS_00063495-exon-scaffold_39-1510915933:258072..258434TCONS_00063495-exon-scaffold_39-1510915933:258072..258434Clytia hemisphaericaexon
TCONS_00063495-exon-scaffold_39-1575043694:258072..258434TCONS_00063495-exon-scaffold_39-1575043694:258072..258434Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063495-proteinTCONS_00063495-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_39supercontigscaffold_39:258072..258434 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 1.22572 0.954692 0.130814 0 0 0.886298 4.16319 4.61274 0.22274 0.651867 0 0.240145 1.23672 1.10374 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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