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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063500 ID=TCONS_00063500|Name=TCONS_00063500|organism=Clytia hemisphaerica|type=transcript|length=1941bp
ATTGCGGAGAACCGGAAGCCCCTGCAAGTCCACGTTCTCCGAGTCTACAG
TCTCAAAGTTCCCCGCCCTGGAGTCCACAACCTTCGAGTTTTCAGCCCCA
AAGTTCCCCACCTTGGAGTCCACAATCTTTGAGTTCCCAACCTGCAAGCT
CTAAACCTTGGAGTCCACAATCTCAGACCTCCCAAACTCTGAGCCCAAAT
CCACAATCCTCTTCAGCAGGTGAAATACCTATGATTGTGAATGATCCAGA
TTGCAATGCCTTAGAAATACGCAAAAACCCGAAGAGGAATAAGCGTAAAC
GATTCACTGACTTTGTAGTTGATGAACAGATAACAAAGCGGAATCGTGTA
TCGGTAACTGAACATCGTAAGAAACTCGATGACGTGTGGGAACTTCGTGA
AGATCGATATGGAGGCCAAGCCACATTATATGTAAAAGATAAGTGTTGCA
TCCTTTCAGGTGATGAATTTTCTGCTGCGTTGATGAATGTTGTTTTCGAC
TTGTTCACACTTCCAAGAAGAACGGATCTTCAATCTATAGGGAAAGAAGG
TGGCTTTTACGCACCTGAGGATGGTTTCTTGCAAATGATTCATCTTTATT
CTAGTCAATGGCTTGTTGTCTGTAGCAACTTTCCTGCAACTTTTGGTCGA
CAAGTTCCAACAGAGACAATATATATTTTTGACCCTTTTCGTTTTCCATC
GGAGAGAAGAGAAGAAGGGTTAATACAATAtccattttcatttgttaaGG
AGCTCCGCTCGTTGATAAAATACCCTGGACAAAGTATTCGGTTCGAAGTG
ATGGATGTACCCCAGGCTAACACAGCAAAACTCAGCGGTATTTATTCCTT
GTTTTTTGTATACCTTTTATCTGAGGGCAAGAATCCAGGTAACTACATTT
TTAAGAATGACGAACTGTTGAGTTCGTTTGTAAGATTTTTGGAAATGGGA
GAAGGCCTTGACGATGCGATTTTATTGCAAACAATGGAAGAACATAGCTT
TACTGAAAGTGTGATACTTTACGAGTGGGAAAATATATTGCACTCTATTT
GCTCCCAACCGGAGCCTCGCACGACTGGGGTGCGTGAATGTAAGATATGC
AATAAATTGTTCCATGAAAATTGCATTGTTAATGAGATTAGTAAGAGTAA
TCGTCTAAAGTGGGAAAATTGGGCTTTTAGATTATGTTCCAATCCGGACG
GGTCAATGATCAATGGATTGCCAACCAAAATTCTTAAatatattttcgta
aaagttTGTTATCGAAAAGAGGCGATGCACAGTACTATTGCACGAGTTTG
TAAAAAATGGAGAGAAATCGTCGAAAATGATGTATTTCGAGCGATCGTTC
AAAGGAAGTTTTTGGATATAGACTTTGGAGCAGCAAAATGGGACGAAGAG
ACAAGACGTAAATATTACTATTCAGGTGTCATAGTAGATTTTTGTATGAA
GTGTGGTGATTCTTTTAAATTCGAATCCGGTTTTCACCGGACCCCTGGGG
GTTGCGTGAAAGTCTATACTAACCTAGAAGAGACGAATAAGTTCGTTGGT
TATTGCTGGCACTGTGCTTTCAATTTAGAAAAGGGAGATTTTCAAACTGA
ATGAAATTTGTTATCTTAAATATGttgttcataaaaaattatacaaCTCT
TTGCCAGAATCTTCTATGGCGGTTTCCAGACCACCCTACTTGTTGTTGAA
CATTGTGGAAAAAAGTTATCACCTTAAGTGTTTCCATGATAATTATCTCG
GAAGATAGAGTTACAATCCCACGCGGTTTGGTGAAATATTAAGGCACCTA
TTTTTGATGTTACATGTCTCACCACCACACCTGTGTTACACATCTCATat
gaaaattctttcaaataatACCTGTTTATGGGACCTCATTTAAATTTGTC
ATTGCGTATGTGTTTTATTAAAGCAACACCTTTCCTTGGTC Run BLAST on NCBI protein sequence of TCONS_00063500-protein >TCONS_00063500-protein ID=TCONS_00063500-protein|Name=TCONS_00063500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=533bp
CGEPEAPASPRSPSLQSQSSPPWSPQPSSFQPQSSPPWSPQSLSSQPASS
KPWSPQSQTSQTLSPNPQSSSAGEIPMIVNDPDCNALEIRKNPKRNKRKR
FTDFVVDEQITKRNRVSVTEHRKKLDDVWELREDRYGGQATLYVKDKCCI
LSGDEFSAALMNVVFDLFTLPRRTDLQSIGKEGGFYAPEDGFLQMIHLYS
SQWLVVCSNFPATFGRQVPTETIYIFDPFRFPSERREEGLIQYPFSFVKE
LRSLIKYPGQSIRFEVMDVPQANTAKLSGIYSLFFVYLLSEGKNPGNYIF
KNDELLSSFVRFLEMGEGLDDAILLQTMEEHSFTESVILYEWENILHSIC
SQPEPRTTGVRECKICNKLFHENCIVNEISKSNRLKWENWAFRLCSNPDG
SMINGLPTKILKYIFVKVCYRKEAMHSTIARVCKKWREIVENDVFRAIVQ
RKFLDIDFGAAKWDEETRRKYYYSGVIVDFCMKCGDSFKFESGFHRTPGG
CVKVYTNLEETNKFVGYCWHCAFNLEKGDFQTE Run BLAST on NCBI transcript from alignment at scaffold_39:521450..523390 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063500 ID=TCONS_00063500|Name=TCONS_00063500|organism=Clytia hemisphaerica|type=transcript|length=1941bp|location=Sequence derived from alignment at scaffold_39:521450..523390 (Clytia hemisphaerica)
GACCAAGGAAAGGTGTTGCTTTAATAAAACACATACGCAATGACAAATTT
AAATGAGGTCCCATAAACAGGTattatttgaaagaattttcatATGAGAT
GTGTAACACAGGTGTGGTGGTGAGACATGTAACATCAAAAATAGGTGCCT
TAATATTTCACCAAACCGCGTGGGATTGTAACTCTATCTTCCGAGATAAT
TATCATGGAAACACTTAAGGTGATAACTTTTTTCCACAATGTTCAACAAC
AAGTAGGGTGGTCTGGAAACCGCCATAGAAGATTCTGGCAAAGAGttgta
taattttttatgaacaaCATATTTAAGATAACAAATTTCATTCAGTTTGA
AAATCTCCCTTTTCTAAATTGAAAGCACAGTGCCAGCAATAACCAACGAA
CTTATTCGTCTCTTCTAGGTTAGTATAGACTTTCACGCAACCCCCAGGGG
TCCGGTGAAAACCGGATTCGAATTTAAAAGAATCACCACACTTCATACAA
AAATCTACTATGACACCTGAATAGTAATATTTACGTCTTGTCTCTTCGTC
CCATTTTGCTGCTCCAAAGTCTATATCCAAAAACTTCCTTTGAACGATCG
CTCGAAATACATCATTTTCGACGATTTCTCTCCATTTTTTACAAACTCGT
GCAATAGTACTGTGCATCGCCTCTTTTCGATAACAaacttttacgaaaat
atatTTAAGAATTTTGGTTGGCAATCCATTGATCATTGACCCGTCCGGAT
TGGAACATAATCTAAAAGCCCAATTTTCCCACTTTAGACGATTACTCTTA
CTAATCTCATTAACAATGCAATTTTCATGGAACAATTTATTGCATATCTT
ACATTCACGCACCCCAGTCGTGCGAGGCTCCGGTTGGGAGCAAATAGAGT
GCAATATATTTTCCCACTCGTAAAGTATCACACTTTCAGTAAAGCTATGT
TCTTCCATTGTTTGCAATAAAATCGCATCGTCAAGGCCTTCTCCCATTTC
CAAAAATCTTACAAACGAACTCAACAGTTCGTCATTCTTAAAAATGTAGT
TACCTGGATTCTTGCCCTCAGATAAAAGGTATACAAAAAACAAGGAATAA
ATACCGCTGAGTTTTGCTGTGTTAGCCTGGGGTACATCCATCACTTCGAA
CCGAATACTTTGTCCAGGGTATTTTATCAACGAGCGGAGCTCCttaacaa
atgaaaatggaTATTGTATTAACCCTTCTTCTCTTCTCTCCGATGGAAAA
CGAAAAGGGTCAAAAATATATATTGTCTCTGTTGGAACTTGTCGACCAAA
AGTTGCAGGAAAGTTGCTACAGACAACAAGCCATTGACTAGAATAAAGAT
GAATCATTTGCAAGAAACCATCCTCAGGTGCGTAAAAGCCACCTTCTTTC
CCTATAGATTGAAGATCCGTTCTTCTTGGAAGTGTGAACAAGTCGAAAAC
AACATTCATCAACGCAGCAGAAAATTCATCACCTGAAAGGATGCAACACT
TATCTTTTACATATAATGTGGCTTGGCCTCCATATCGATCTTCACGAAGT
TCCCACACGTCATCGAGTTTCTTACGATGTTCAGTTACCGATACACGATT
CCGCTTTGTTATCTGTTCATCAACTACAAAGTCAGTGAATCGTTTACGCT
TATTCCTCTTCGGGTTTTTGCGTATTTCTAAGGCATTGCAATCTGGATCA
TTCACAATCATAGGTATTTCACCTGCTGAAGAGGATTGTGGATTTGGGCT
CAGAGTTTGGGAGGTCTGAGATTGTGGACTCCAAGGTTTAGAGCTTGCAG
GTTGGGAACTCAAAGATTGTGGACTCCAAGGTGGGGAACTTTGGGGCTGA
AAACTCGAAGGTTGTGGACTCCAGGGCGGGGAACTTTGAGACTGTAGACT
CGGAGAACGTGGACTTGCAGGGGCTTCCGGTTCTCCGCAAT Coding sequence (CDS) from alignment at scaffold_39:521450..523390 >TCONS_00063500 ID=TCONS_00063500|Name=TCONS_00063500|organism=Clytia hemisphaerica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_39:521450..523390 (Clytia hemisphaerica)
TCATTCAGTTTGAAAATCTCCCTTTTCTAAATTGAAAGCACAGTGCCAGC
AATAACCAACGAACTTATTCGTCTCTTCTAGGTTAGTATAGACTTTCACG
CAACCCCCAGGGGTCCGGTGAAAACCGGATTCGAATTTAAAAGAATCACC
ACACTTCATACAAAAATCTACTATGACACCTGAATAGTAATATTTACGTC
TTGTCTCTTCGTCCCATTTTGCTGCTCCAAAGTCTATATCCAAAAACTTC
CTTTGAACGATCGCTCGAAATACATCATTTTCGACGATTTCTCTCCATTT
TTTACAAACTCGTGCAATAGTACTGTGCATCGCCTCTTTTCGATAACAaa
cttttacgaaaatatatTTAAGAATTTTGGTTGGCAATCCATTGATCATT
GACCCGTCCGGATTGGAACATAATCTAAAAGCCCAATTTTCCCACTTTAG
ACGATTACTCTTACTAATCTCATTAACAATGCAATTTTCATGGAACAATT
TATTGCATATCTTACATTCACGCACCCCAGTCGTGCGAGGCTCCGGTTGG
GAGCAAATAGAGTGCAATATATTTTCCCACTCGTAAAGTATCACACTTTC
AGTAAAGCTATGTTCTTCCATTGTTTGCAATAAAATCGCATCGTCAAGGC
CTTCTCCCATTTCCAAAAATCTTACAAACGAACTCAACAGTTCGTCATTC
TTAAAAATGTAGTTACCTGGATTCTTGCCCTCAGATAAAAGGTATACAAA
AAACAAGGAATAAATACCGCTGAGTTTTGCTGTGTTAGCCTGGGGTACAT
CCATCACTTCGAACCGAATACTTTGTCCAGGGTATTTTATCAACGAGCGG
AGCTCCttaacaaatgaaaatggaTATTGTATTAACCCTTCTTCTCTTCT
CTCCGATGGAAAACGAAAAGGGTCAAAAATATATATTGTCTCTGTTGGAA
CTTGTCGACCAAAAGTTGCAGGAAAGTTGCTACAGACAACAAGCCATTGA
CTAGAATAAAGATGAATCATTTGCAAGAAACCATCCTCAGGTGCGTAAAA
GCCACCTTCTTTCCCTATAGATTGAAGATCCGTTCTTCTTGGAAGTGTGA
ACAAGTCGAAAACAACATTCATCAACGCAGCAGAAAATTCATCACCTGAA
AGGATGCAACACTTATCTTTTACATATAATGTGGCTTGGCCTCCATATCG
ATCTTCACGAAGTTCCCACACGTCATCGAGTTTCTTACGATGTTCAGTTA
CCGATACACGATTCCGCTTTGTTATCTGTTCATCAACTACAAAGTCAGTG
AATCGTTTACGCTTATTCCTCTTCGGGTTTTTGCGTATTTCTAAGGCATT
GCAATCTGGATCATTCACAATCATAGGTATTTCACCTGCTGAAGAGGATT
GTGGATTTGGGCTCAGAGTTTGGGAGGTCTGAGATTGTGGACTCCAAGGT
TTAGAGCTTGCAGGTTGGGAACTCAAAGATTGTGGACTCCAAGGTGGGGA
ACTTTGGGGCTGAAAACTCGAAGGTTGTGGACTCCAGGGCGGGGAACTTT
GAGACTGTAGACTCGGAGAACGTGGACTTGCAGGGGCTTCCGGTTCTCCG
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063500-exon-scaffold_39-1491911889:521450..523390 | TCONS_00063500-exon-scaffold_39-1491911889:521450..523390 | Clytia hemisphaerica | exon |
| TCONS_00063500-exon-scaffold_39-1510915933:521450..523390 | TCONS_00063500-exon-scaffold_39-1510915933:521450..523390 | Clytia hemisphaerica | exon |
| TCONS_00063500-exon-scaffold_39-1575043694:521450..523390 | TCONS_00063500-exon-scaffold_39-1575043694:521450..523390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_39 | supercontig | scaffold_39:521450..523390 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001810 | F-box_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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