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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063501 ID=TCONS_00063501|Name=TCONS_00063501|organism=Clytia hemisphaerica|type=transcript|length=642bp
AAAAAGTGACATGAGTCTCAGTGACCCATTGAGGCTTAGAAAATTGAACA
GTAATTTGGAAGTACAATAAGGATTCTGAAATCAAGTTCAATAAAATGGC
TAATATAATGTTTGGCTTTTACACGTGGTTACTTTTCATCCAAGTTTTAC
GTTTAAGTAGCTTGCATTTTGAGATAAGTAGAACAACCAGACTACCAAAC
AGTAGACAAAACttaatattaaatatttttaaaacggACTCAGTATTTAT
CTGCTCACATAAATGCCAATTGGTGTCGGAATGTAAATAtgcaaacttct
tggaagaaaaaagtgaatgtcAACTAATCAGAGTCGATGATCATACCGAG
AGTCAAAATGAAGGCAATGGGGAATTAATCACTTTGACAAAGGTGATCCA
TAAGTTTAGCCATGGAAGATGTATTGTAAACACGGTGAATGAAAATAGTT
CCGAAATAGTAACAACGCCAAACATTACTGTCAAAAATGCAACCACAACG
GCATCGCCAGACGTTCCTGATAATTCAACAGAGCCGCAACCAATTACACA
GGCTCCACCACCACAACCAATTATAGTTGCTCCACCACAACCAATAGTAG
TTCCTCCACCACAACCAATTACACAGGCTCCCCCACCACAAC Run BLAST on NCBI protein sequence of TCONS_00063501-protein >TCONS_00063501-protein ID=TCONS_00063501-protein|Name=TCONS_00063501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MANIMFGFYTWLLFIQVLRLSSLHFEISRTTRLPNSRQNLILNIFKTDSV
FICSHKCQLVSECKYANFLEEKSECQLIRVDDHTESQNEGNGELITLTKV
IHKFSHGRCIVNTVNENSSEIVTTPNITVKNATTTASPDVPDNSTEPQPI
TQAPPPQPIIVAPPQPIVVPPPQPITQAPPPQ Run BLAST on NCBI transcript from alignment at scaffold_390:1614..2587+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063501 ID=TCONS_00063501|Name=TCONS_00063501|organism=Clytia hemisphaerica|type=transcript|length=974bp|location=Sequence derived from alignment at scaffold_390:1614..2587+ (Clytia hemisphaerica)
AAAAAGTGACATGAGTCTCAGTGACCCATTGAGGCTTAGAAAATTGAACA
GTAATTTGGAAGTACAATAAGGATTCTGAAATCAAGTTCAATAAAATGGC
TAATATAATGTTTGGCTTTTACACGTGGTTACTTTTCATCCAAGTTTTAC
GTTTAAGTAGCTTGCATTTTGAGATAAGTAGAACAACCAGACTACCAAAC
AGTAGACAAAACttaatattaaatatttttaaaacggACTCAGTATTTAT
CTGCTCACATAAATGCCAATTGGTGTCGGAATGTAAATAtgcaaacttct
tggaagaaaaaagtgaatgtcAACTAATCAGAGTCGATGATCATACCGAG
AGTCAAAATGAAGGCAATGGGGAATTAATCACTTTGACAAAGGTTAttta
aagaaaatcatttaACACATCATCTgctcaaacaattttttgattccCTT
GTACAAAATTAGATTCTTATTAATTCTGCTTTATCTAGCATAAAAGCCAA
CTCTGCAATACAACGTTACGATAAAGAGCCcttaaattgacattttaata
TGAATGTATCATTTACTAACCTTGAAACTTGCAAAAAGAGTTCTAAGTAT
TAAAACTCTAAGTACAAAGAAACGACTTCTCTGATTGCTAAAAATCTGTA
AACtgtgaaaagatttttaaataaaaaaagtatcaTTAAACCTATGAATA
TACTTCTTTCTCTTTACTATCTAGGTGATCCATAAGTTTAGCCATGGAAG
ATGTATTGTAAACACGGTGAATGAAAATAGTTCCGAAATAGTAACAACGC
CAAACATTACTGTCAAAAATGCAACCACAACGGCATCGCCAGACGTTCCT
GATAATTCAACAGAGCCGCAACCAATTACACAGGCTCCACCACCACAACC
AATTATAGTTGCTCCACCACAACCAATAGTAGTTCCTCCACCACAACCAA
TTACACAGGCTCCCCCACCACAAC Coding sequence (CDS) from alignment at scaffold_390:1614..2587+ >TCONS_00063501 ID=TCONS_00063501|Name=TCONS_00063501|organism=Clytia hemisphaerica|type=CDS|length=1092bp|location=Sequence derived from alignment at scaffold_390:1614..2587+ (Clytia hemisphaerica)
ATGGCTAATATAATGTTTGGCTTTTACACGTGGTTACTTTTCATCCAAGT
TTTACGTTTAAGTAGCTTGCATTTTGAGATAAGTAGAACAACCAGACTAC
CAAACAGTAGACAAAACttaatattaaatatttttaaaacggACTCAGTA
TTTATCTGCTCACATAAATGCCAATTGGTGTCGGAATGTAAATAtgcaaa
cttcttggaagaaaaaagtgaatgtcAACTAATCAGAGTCGATGATCATA
CCGAGAGTCAAAATGAAGGCAATGGGGAATTAATCACTTTGACAAAGGTG
ATCCATAAGTTTAGCCATGGAAGATGTATTGTAAACACGGTGAATGAAAA
TAGTTCCGAAATAGTAACAACGCCAAACATTACTGTCAAAAATGCAACCA
CAACGGCATCGCCAGACGTTCCTGATAATTCAACAGAGCCGCAACCAATT
ACACAGGCTCCACCACCACAACCAATTATAGTTGCTCCACCACAACCAAT
AGTAGTTCCTCCACCACAACCAATTACACAGGCTCCCCCACCACAAATGG
CTAATATAATGTTTGGCTTTTACACGTGGTTACTTTTCATCCAAGTTTTA
CGTTTAAGTAGCTTGCATTTTGAGATAAGTAGAACAACCAGACTACCAAA
CAGTAGACAAAACttaatattaaatatttttaaaacggACTCAGTATTTA
TCTGCTCACATAAATGCCAATTGGTGTCGGAATGTAAATAtgcaaacttc
ttggaagaaaaaagtgaatgtcAACTAATCAGAGTCGATGATCATACCGA
GAGTCAAAATGAAGGCAATGGGGAATTAATCACTTTGACAAAGGTGATCC
ATAAGTTTAGCCATGGAAGATGTATTGTAAACACGGTGAATGAAAATAGT
TCCGAAATAGTAACAACGCCAAACATTACTGTCAAAAATGCAACCACAAC
GGCATCGCCAGACGTTCCTGATAATTCAACAGAGCCGCAACCAATTACAC
AGGCTCCACCACCACAACCAATTATAGTTGCTCCACCACAACCAATAGTA
GTTCCTCCACCACAACCAATTACACAGGCTCCCCCACCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063501-exon-scaffold_390-1491911889:1614..2005 | TCONS_00063501-exon-scaffold_390-1491911889:1614..2005 | Clytia hemisphaerica | exon |
| TCONS_00063501-exon-scaffold_390-1510915933:1614..2005 | TCONS_00063501-exon-scaffold_390-1510915933:1614..2005 | Clytia hemisphaerica | exon |
| TCONS_00063501-exon-scaffold_390-1575043694:1614..2005 | TCONS_00063501-exon-scaffold_390-1575043694:1614..2005 | Clytia hemisphaerica | exon |
| TCONS_00063501-exon-scaffold_390-1491911889:2338..2587 | TCONS_00063501-exon-scaffold_390-1491911889:2338..2587 | Clytia hemisphaerica | exon |
| TCONS_00063501-exon-scaffold_390-1510915933:2338..2587 | TCONS_00063501-exon-scaffold_390-1510915933:2338..2587 | Clytia hemisphaerica | exon |
| TCONS_00063501-exon-scaffold_390-1575043694:2338..2587 | TCONS_00063501-exon-scaffold_390-1575043694:2338..2587 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_390 | supercontig | scaffold_390:1614..2587 + |
Blast
The following BLAST results are available for this feature:
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