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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063502 ID=TCONS_00063502|Name=TCONS_00063502|organism=Clytia hemisphaerica|type=transcript|length=1711bp
CTAGATCGaggataataaaaaaaacatattttgaaaatattaaaaagtgA
TATTTCATTCATGTACTGTTAAATTGAGGATCATTTTCCTTCCTTCTGAA
GGTATTTGCTTACGAGGGGTCTTTTCGACACCTTGGATATGTACAGAAGA
TGAATATCAAAATTGTAAAACTCATCATCCTACTATTCTGCACACTCCAt
caaattcaagcatcaaaattcCAACATTTTGAAATCACAAGGGGCAAGAA
AATTGTTGTTGATCAAAACTTAACTTTGCAGACAACACAAGCAGATTCAA
TACTCATCTGCTCACATAAATGTCAATTGCATTTAGAATGTGAATATGCA
AATCATTTGGAGTCACAGAAACAGTGTCAATTGATTGGCGGACATCCAAA
CAATATATTTGTGGATGAGGAAGGTTCCATTGTTTTGTCAAAGAATGTTA
GAACAATGTGCAGCTATGCTGGAGTTGAAGACCAGGGCGACGACAATATT
TCttcttcaacaacaacaacaacgacagcaacaacaacaacagcaacaac
gacaacaacaacaacaccatCTAGCACCACCACTGAACTGGTGACCACTA
CAGCCGCATCAACACAACCAGTAACATCTCCATCATTATATTCCTGGTCC
CGCGACCAAGAATTTGCAACAGTCAAAGGAACCATATTGGATACGATACC
GACACAAACCAAAAGTTGGAAGTTGGAAATGACAATCAAGCTGTTACAAA
TAAGTAACAAGGAAACAAACATACTTCGCATTCTCAACCCTGATATAAGT
ACTCTGAATAATCCAGGTCTTTTTGTGGAGAAAGACTCAACTGACTTGCT
TTTAAAGATTGCAATGGACTCAAAGCCAAATAAAAGCATAACTGGATTTG
GTTCTCTCATATTAGACACATGGGTTACTGTTAACATAAGAAATACCAAA
TCTTCGAATGGATACAAATTTGGAGTCTGGATTGACAATGAGAAAAAATT
CGAGATAGTACATCCTGATCCACAAGAGTATTCGAATATGGAAATTCATT
GTTCGATTGATGGATCACCAAGAGCAGATGTTAAAATCAAGATGTTCTCT
TTCGAAAATCTTGGAAATTAATACACTGCGATGACTAATACAATTGAATT
TTGCTAATAAAAgctttataaagaaaatgaaaagactGGACGGAATACAT
TTGAATCACTTAGTGCACCGTATTGTTATTTACAACTAATAGTAATTATT
AATGGACTGAAAGCCCGACTAATAACCCGTTCCCTATTCAATGAAGTTAA
AGCTCGATGACTTTTAACTTAAACTCTCAACTTGCGTAAAATACCTTGGG
CCATTTCTCGATGAATTTCTAACCTTGAAATGGTATACTTGCTAAgctta
ataaaaaaaacatcaaacttgTACACCAAACTATTAACAAAATCTCTCCA
CCAGCACTAAGAAATCCCTTGATTTCAAAGTCTCATTTCTCGTGCATATC
AAACAAGAAATATGAAACCTGAAGCTCCTAGAACGTCCCAAAGCTAAAAC
CTTGAACTATGGCTTAAAGTCCGTTAAAATACCGATCAATATTAAATTGG
AACCAACTAATATTGCACTCAAAAGAAGACCTAAGTTCACTGTCTCTGTA
TCTGCTTAACGAAAGAGCCGATAATCTCCTACACAGCTAACTCTGATTAT
GTCCTTACCTG Run BLAST on NCBI protein sequence of TCONS_00063502-protein >TCONS_00063502-protein ID=TCONS_00063502-protein|Name=TCONS_00063502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MNIKIVKLIILLFCTLHQIQASKFQHFEITRGKKIVVDQNLTLQTTQADS
ILICSHKCQLHLECEYANHLESQKQCQLIGGHPNNIFVDEEGSIVLSKNV
RTMCSYAGVEDQGDDNISSSTTTTTTATTTTATTTTTTTPSSTTTELVTT
TAASTQPVTSPSLYSWSRDQEFATVKGTILDTIPTQTKSWKLEMTIKLLQ
ISNKETNILRILNPDISTLNNPGLFVEKDSTDLLLKIAMDSKPNKSITGF
GSLILDTWVTVNIRNTKSSNGYKFGVWIDNEKKFEIVHPDPQEYSNMEIH
CSIDGSPRADVKIKMFSFENLGN Run BLAST on NCBI transcript from alignment at scaffold_390:7410..11327+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063502 ID=TCONS_00063502|Name=TCONS_00063502|organism=Clytia hemisphaerica|type=transcript|length=3918bp|location=Sequence derived from alignment at scaffold_390:7410..11327+ (Clytia hemisphaerica)
CTAGATCGaggataataaaaaaaacatattttgaaaatattaaaaagtgA
TATTTCATTCATGTACTGTTAAATTGAGGATCATTTTCCTTCCTTCTGAA
GGTATTTGCTTACGAGGGGTCTTTTCGACACCTTGGATATGTACAGAAGA
TGAATATCAAAATTGTAAAACTCATCATCCTACTATTCTGCACACTCCAt
caaattcaagcatcaaaattcCAACATTTTGAAATCACAAGGGGCAAGAA
AATTGTTGTTGATCAAAACTTAACTTTGCAGACAACACAAGCAGATTCAA
TACTCATCTGCTCACATAAATGTCAATTGCATTTAGAATGTGAATATGCA
AATCATTTGGAGTCACAGAAACAGTGTCAATTGATTGGCGGACATCCAAA
CAATATATTTGTGGATGAGGAAGGTTCCATTGTTTTGTCAAAGGTAGGTT
GATAatagcTTCATACCCAACAATAGACCCTATCggagttttagattttt
ctaaaaaagcgatgcattgtgggattgtttcgagtgtattacaatagaat
tccttcGAGGAATTTCTAATTTCTTATATTTCTGTTATAttatattgtaa
tacactcgaaacaatcccaaacAATCCCAAAACTCCAATGAGGTCTATCT
CGTGTCCAGAGCTACAtgcaccactttttgattttattgaaggGTCAATG
GTACGCTcatgagcgctatcagaatcattaAAAAGGCGTAACTTAGGGAT
CAGGTTCGAGTTTGCGTCCCTAATGATTTTTGAATTCATATAAAACTACT
TTTTGTCGTTAGTGATTTCATTAGTTGTTATGTCTTTTCTCTGATATATC
TAATAAACGAAATCTGAAGTATAACaggtattgttttttttaagtgtaTG
CATATACTTCCTTATAGAATGTTAGAACAATGTGCAGCTATGCTGGAGTT
GAAGACCAGGGCGACGACAATATTTCttcttcaacaacaacaacaacgac
agcaacaacaacaacagcaacaacgacaacaacaacaacaccatCTAGCA
CCACCACTGAACTGGTGACCACTACAGCCGCATCAACACAACCAGTAACA
TCTCCATCATTATATTCCTGGTCCCGCGACCAAGGTAATACAATCGACTC
TCTCTctatctctctctctcttcaAGGAACCTGATTATGTGATTCCCACG
TTTGCTTTCGGAGTAAAAGTTAGTAACCCTATATTATTTATCATCATCTT
TGTTCTAGATTAAAAGATGATCGTTGACATTAGAGCTTTCAGCATTTTTA
TCATCTGTTtctctgtacacagacccagtatctacgactAATTGCAAAAT
TGCCGTAGAGCGTCTGTTGttattgtcttttctcatttgagatttttcaa
atgcATCGCTGCGAtagagtgttggtgagagacgGGAGATGATgcgagaa
gtgttgctatttataaatcatacttcatcgcagaggtctccgtacgtgaa
tattctttcaaacaaatgcgcacagagtgtaNTTGCGATAGGGGAGATGA
Tgcgagaagtgttgctatttataaatcatacttcatcgcagaggtctccg
tacgtgaatattctttcaaacaaatgcgcacagagtgtactacaaaAAGA
TAAACGTCATAAACTCTGGTATAGAGTAACGCGATAAACGTGAGTTACAT
TTTAGTACATAGTAATCATCTGTGGGAAACAGTAGTTGGGTTTATATTAT
AGTATTGTAGTTTTAGTATTAAACTTTATATTCCTCAGAATTTGCAACAG
TCAAAGGAACCATATTGGATACGATACCGACACAAACCAAAAGTTGGAAG
TTGGAAATGACAATCAAGCTGTTACAAATAAGTAACAAGGAAACAAACAT
ACTTCGCATTCTCAACCCTGATATAAGTACTCTGAATAATCCAGGTAATC
CAGGATATTAAAGTCCATTAGGCTTAAGTGTACACTCTTTCTTGTTACCA
TGTAGAAAccactctcaaaggaattactCTAGTAAGGCTGTCATGGTTTC
CACATGCTGAGCGAGCGGATTTTAAAGCGAGCGGactttaattatttatt
tttttaggaaATAGGATTAACTTTGtggtagcctgggaatccaagctcat
aatcttagaaaaaaaaaatacctcacctcacaaagttctaaacttataga
gcttggtgcaggtagattagtctgacacagaatgttataaacagtccaGT
CTATGTGTGAaaccttgttgacagacttgctgaactttggaaacccaggc
aaacacacataatcaacttaccataaaaactctttcacaagctctaaaga
ctttcaaaactactaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNaccgtctccgtcgctgaaaaacacacatacataaacttggTAATA
TCTTTGATTCTATGTCCTAATTCGAAGTTACCTGACACCAAAAGAATCCT
TTTCTACCACCACGAAGCTCTagcttaaaaacatgaaaaattataaTCTT
AATTATACTTTTATTACTAACAGGTCTTTTTGTGGAGAAAGACTCAACTG
ACTTGCTTTTAAAGATTGCAATGGACTCAAAGCCAAATAAAAGCATAACT
GGATTTGGTTCTCTCATATTAGACACATGGGTTACTGTTAACATAAGAAA
TACCAAATCTTCGAATGGATACAAATTTGGAGTCTGGATTGACAATGAGA
AAAAATTCGAGATAGTACATCCTGATCCACAAGAGTATTCGAATATGGAA
ATTCATTGTTCGATTGATGGATCACCAAGAGCAGATGTTAAAATCAAGAT
GTTCTCTTTCGAAAATCTTGGAAATTAATACACTGCGATGACTAATACAA
TTGAATTTTGCTAATAAAAgctttataaagaaaatgaaaagactGGACGG
AATACATTTGAATCACTTAGTGCACCGTATTGTTATTTACAACTAATAGT
AATTATTAATGGACTGAAAGCCCGACTAATAACCCGTTCCCTATTCAATG
AAGTTAAAGCTCGATGACTTTTAACTTAAACTCTCAACTTGCGTAAAATA
CCTTGGGCCATTTCTCGATGAATTTCTAACCTTGAAATGGTATACTTGCT
AAgcttaataaaaaaaacatcaaacttgTACACCAAACTATTAACAAAAT
CTCTCCACCAGCACTAAGAAATCCCTTGATTTCAAAGTCTCATTTCTCGT
GCATATCAAACAAGAAATATGAAACCTGAAGCTCCTAGAACGTCCCAAAG
CTAAAACCTTGAACTATGGCTTAAAGTCCGTTAAAATACCGATCAATATT
AAATTGGAACCAACTAATATTGCACTCAAAAGAAGACCTAAGTTCACTGT
CTCTGTATCTGCTTAACGAAAGAGCCGATAATCTCCTACACAGCTAACTC
TGATTATGTCCTTACCTG Coding sequence (CDS) from alignment at scaffold_390:7410..11327+ >TCONS_00063502 ID=TCONS_00063502|Name=TCONS_00063502|organism=Clytia hemisphaerica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_390:7410..11327+ (Clytia hemisphaerica)
ATGAATATCAAAATTGTAAAACTCATCATCCTACTATTCTGCACACTCCA
tcaaattcaagcatcaaaattcCAACATTTTGAAATCACAAGGGGCAAGA
AAATTGTTGTTGATCAAAACTTAACTTTGCAGACAACACAAGCAGATTCA
ATACTCATCTGCTCACATAAATGTCAATTGCATTTAGAATGTGAATATGC
AAATCATTTGGAGTCACAGAAACAGTGTCAATTGATTGGCGGACATCCAA
ACAATATATTTGTGGATGAGGAAGGTTCCATTGTTTTGTCAAAGAATGTT
AGAACAATGTGCAGCTATGCTGGAGTTGAAGACCAGGGCGACGACAATAT
TTCttcttcaacaacaacaacaacgacagcaacaacaacaacagcaacaa
cgacaacaacaacaacaccatCTAGCACCACCACTGAACTGGTGACCACT
ACAGCCGCATCAACACAACCAGTAACATCTCCATCATTATATTCCTGGTC
CCGCGACCAAGAATTTGCAACAGTCAAAGGAACCATATTGGATACGATAC
CGACACAAACCAAAAGTTGGAAGTTGGAAATGACAATCAAGCTGTTACAA
ATAAGTAACAAGGAAACAAACATACTTCGCATTCTCAACCCTGATATAAG
TACTCTGAATAATCCAGGTCTTTTTGTGGAGAAAGACTCAACTGACTTGC
TTTTAAAGATTGCAATGGACTCAAAGCCAAATAAAAGCATAACTGGATTT
GGTTCTCTCATATTAGACACATGGGTTACTGTTAACATAAGAAATACCAA
ATCTTCGAATGGATACAAATTTGGAGTCTGGATTGACAATGAGAAAAAAT
TCGAGATAGTACATCCTGATCCACAAGAGTATTCGAATATGGAAATTCAT
TGTTCGATTGATGGATCACCAAGAGCAGATGTTAAAATCAAGATGTTCTC
TTTCGAAAATCTTGGAAATTAAATGAATATCAAAATTGTAAAACTCATCA
TCCTACTATTCTGCACACTCCAtcaaattcaagcatcaaaattcCAACAT
TTTGAAATCACAAGGGGCAAGAAAATTGTTGTTGATCAAAACTTAACTTT
GCAGACAACACAAGCAGATTCAATACTCATCTGCTCACATAAATGTCAAT
TGCATTTAGAATGTGAATATGCAAATCATTTGGAGTCACAGAAACAGTGT
CAATTGATTGGCGGACATCCAAACAATATATTTGTGGATGAGGAAGGTTC
CATTGTTTTGTCAAAGAATGTTAGAACAATGTGCAGCTATGCTGGAGTTG
AAGACCAGGGCGACGACAATATTTCttcttcaacaacaacaacaacgaca
gcaacaacaacaacagcaacaacgacaacaacaacaacaccatCTAGCAC
CACCACTGAACTGGTGACCACTACAGCCGCATCAACACAACCAGTAACAT
CTCCATCATTATATTCCTGGTCCCGCGACCAAGAATTTGCAACAGTCAAA
GGAACCATATTGGATACGATACCGACACAAACCAAAAGTTGGAAGTTGGA
AATGACAATCAAGCTGTTACAAATAAGTAACAAGGAAACAAACATACTTC
GCATTCTCAACCCTGATATAAGTACTCTGAATAATCCAGGTCTTTTTGTG
GAGAAAGACTCAACTGACTTGCTTTTAAAGATTGCAATGGACTCAAAGCC
AAATAAAAGCATAACTGGATTTGGTTCTCTCATATTAGACACATGGGTTA
CTGTTAACATAAGAAATACCAAATCTTCGAATGGATACAAATTTGGAGTC
TGGATTGACAATGAGAAAAAATTCGAGATAGTACATCCTGATCCACAAGA
GTATTCGAATATGGAAATTCATTGTTCGATTGATGGATCACCAAGAGCAG
ATGTTAAAATCAAGATGTTCTCTTTCGAAAATCTTGGAAATTAAATGAAT
ATCAAAATTGTAAAACTCATCATCCTACTATTCTGCACACTCCAtcaaat
tcaagcatcaaaattcCAACATTTTGAAATCACAAGGGGCAAGAAAATTG
TTGTTGATCAAAACTTAACTTTGCAGACAACACAAGCAGATTCAATACTC
ATCTGCTCACATAAATGTCAATTGCATTTAGAATGTGAATATGCAAATCA
TTTGGAGTCACAGAAACAGTGTCAATTGATTGGCGGACATCCAAACAATA
TATTTGTGGATGAGGAAGGTTCCATTGTTTTGTCAAAGAATGTTAGAACA
ATGTGCAGCTATGCTGGAGTTGAAGACCAGGGCGACGACAATATTTCttc
ttcaacaacaacaacaacgacagcaacaacaacaacagcaacaacgacaa
caacaacaacaccatCTAGCACCACCACTGAACTGGTGACCACTACAGCC
GCATCAACACAACCAGTAACATCTCCATCATTATATTCCTGGTCCCGCGA
CCAAGAATTTGCAACAGTCAAAGGAACCATATTGGATACGATACCGACAC
AAACCAAAAGTTGGAAGTTGGAAATGACAATCAAGCTGTTACAAATAAGT
AACAAGGAAACAAACATACTTCGCATTCTCAACCCTGATATAAGTACTCT
GAATAATCCAGGTCTTTTTGTGGAGAAAGACTCAACTGACTTGCTTTTAA
AGATTGCAATGGACTCAAAGCCAAATAAAAGCATAACTGGATTTGGTTCT
CTCATATTAGACACATGGGTTACTGTTAACATAAGAAATACCAAATCTTC
GAATGGATACAAATTTGGAGTCTGGATTGACAATGAGAAAAAATTCGAGA
TAGTACATCCTGATCCACAAGAGTATTCGAATATGGAAATTCATTGTTCG
ATTGATGGATCACCAAGAGCAGATGTTAAAATCAAGATGTTCTCTTTCGA
AAATCTTGGAAATTAAATGAATATCAAAATTGTAAAACTCATCATCCTAC
TATTCTGCACACTCCAtcaaattcaagcatcaaaattcCAACATTTTGAA
ATCACAAGGGGCAAGAAAATTGTTGTTGATCAAAACTTAACTTTGCAGAC
AACACAAGCAGATTCAATACTCATCTGCTCACATAAATGTCAATTGCATT
TAGAATGTGAATATGCAAATCATTTGGAGTCACAGAAACAGTGTCAATTG
ATTGGCGGACATCCAAACAATATATTTGTGGATGAGGAAGGTTCCATTGT
TTTGTCAAAGAATGTTAGAACAATGTGCAGCTATGCTGGAGTTGAAGACC
AGGGCGACGACAATATTTCttcttcaacaacaacaacaacgacagcaaca
acaacaacagcaacaacgacaacaacaacaacaccatCTAGCACCACCAC
TGAACTGGTGACCACTACAGCCGCATCAACACAACCAGTAACATCTCCAT
CATTATATTCCTGGTCCCGCGACCAAGAATTTGCAACAGTCAAAGGAACC
ATATTGGATACGATACCGACACAAACCAAAAGTTGGAAGTTGGAAATGAC
AATCAAGCTGTTACAAATAAGTAACAAGGAAACAAACATACTTCGCATTC
TCAACCCTGATATAAGTACTCTGAATAATCCAGGTCTTTTTGTGGAGAAA
GACTCAACTGACTTGCTTTTAAAGATTGCAATGGACTCAAAGCCAAATAA
AAGCATAACTGGATTTGGTTCTCTCATATTAGACACATGGGTTACTGTTA
ACATAAGAAATACCAAATCTTCGAATGGATACAAATTTGGAGTCTGGATT
GACAATGAGAAAAAATTCGAGATAGTACATCCTGATCCACAAGAGTATTC
GAATATGGAAATTCATTGTTCGATTGATGGATCACCAAGAGCAGATGTTA
AAATCAAGATGTTCTCTTTCGAAAATCTTGGAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063502-exon-scaffold_390-1491911889:7410..7852 | TCONS_00063502-exon-scaffold_390-1491911889:7410..7852 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1510915933:7410..7852 | TCONS_00063502-exon-scaffold_390-1510915933:7410..7852 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1575043694:7410..7852 | TCONS_00063502-exon-scaffold_390-1575043694:7410..7852 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1491911889:8327..8543 | TCONS_00063502-exon-scaffold_390-1491911889:8327..8543 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1510915933:8327..8543 | TCONS_00063502-exon-scaffold_390-1510915933:8327..8543 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1575043694:8327..8543 | TCONS_00063502-exon-scaffold_390-1575043694:8327..8543 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1491911889:9198..9353 | TCONS_00063502-exon-scaffold_390-1491911889:9198..9353 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1510915933:9198..9353 | TCONS_00063502-exon-scaffold_390-1510915933:9198..9353 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1575043694:9198..9353 | TCONS_00063502-exon-scaffold_390-1575043694:9198..9353 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1491911889:10433..11327 | TCONS_00063502-exon-scaffold_390-1491911889:10433..11327 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1510915933:10433..11327 | TCONS_00063502-exon-scaffold_390-1510915933:10433..11327 | Clytia hemisphaerica | exon |
| TCONS_00063502-exon-scaffold_390-1575043694:10433..11327 | TCONS_00063502-exon-scaffold_390-1575043694:10433..11327 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_390 | supercontig | scaffold_390:7410..11327 + |
Blast
The following BLAST results are available for this feature:
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