TCONS_00063507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063507
Unique NameTCONS_00063507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1072

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063507 ID=TCONS_00063507|Name=TCONS_00063507|organism=Clytia hemisphaerica|type=transcript|length=1072bp
TAGATAGATATTACtgaattatacatttttgaCTTACAACGATGGAAGAC
TCACCTAAAAGGGAAATTAAGCAAGGTCGAAGAGCTGGGAATTTGTTTCA
AACAGCAGGCTCAAATGCATCAACGAATGAAAGTAACAACAATGCAATTA
AAACAGAGGCATCTTCATCACTGTCACCGAAACCAGCACGAAAGCAGGGA
GGATGGGCGGATgatataaaagaaaagaaaagaggtgATGAAGGCAGTGA
TAACGAGCAAGATGATGAAGGgaaatttggaagaatgttGGAAGAAGAAG
ACGAGCGATTGAAACAAGATGCGACAGTAGTTTTGGATAATGATGGTGAT
GACATTCCAATCATCCCTGAACTTGATGACGTCACTGAAGATGACATGGC
TTCACAAGTCGCTGCACCTCCGAGTGTGCTGGTCACAAGGATTGCAACCT
ACAAAGAACTTGATCATGATTTCGAAAAACATACAGGACTTTTGACATTG
GACGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAATC
TGAAATACAAGAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTG
AGGTATCATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACA
TCCAGCAACAAAGATTAAATCTGATTATAACTTTGCATACACCAAAGGCT
TGGCTTCTGGTACCTCTTCGCAGGCCTTTGTCGATGCTCTAGGGAGTAGA
AGATAGGCATTTAAATTATTATCATTTTTAGCGCACAATATGTACATATA
GAATAATGTAAATAATGGAAACAAATTTTaccatcaaaatattcaaagcA
ACTTTACTATCACAacaaattatattccattattgCTGGTTCTTTGAAAT
TGCAATTGCTACCCCATGAGCCAATTTTGAAGAATTCGCGTGGATTTAGT
TTCGGGAGTCTGTGAACTAGTAAGATTTTAGATCTGTTATCATGTTGTTC
TGGGTGAGAAACAGAAGTGCTTACATTATTTTTCATTACTTTCGAGTAGG
TTTTATAAGCTTATGAAAAGAC
Run BLAST on NCBI

protein sequence of TCONS_00063507-protein

>TCONS_00063507-protein ID=TCONS_00063507-protein|Name=TCONS_00063507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MEDSPKREIKQGRRAGNLFQTAGSNASTNESNNNAIKTEASSSLSPKPAR
KQGGWADDIKEKKRGDEGSDNEQDDEGKFGRMLEEEDERLKQDATVVLDN
DGDDIPIIPELDDVTEDDMASQVAAPPSVLVTRIATYKELDHDFEKHTGL
LTLDGDIDLKLLGNVLAPESEIQEADKAWNWDRVFTEVSSELRSEWEQTK
SLTSSNKD
Run BLAST on NCBI

transcript from alignment at scaffold_391:66156..71161+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063507 ID=TCONS_00063507|Name=TCONS_00063507|organism=Clytia hemisphaerica|type=transcript|length=5006bp|location=Sequence derived from alignment at scaffold_391:66156..71161+ (Clytia hemisphaerica)
TAGATAGATATTACtgaattatacatttttgaCTTACAACGATGGAAGAC
TCACCTAAAAGGGTATGTATTCTTTGATACACTATTAACCCTAATAATGG
CAAGGGGCGTTGTACACCTTTTTAAGCCTCTTAGGAAAACTTGCCAGTTG
TTGCACACTAGGTCAGGTTTTGTTACTTCACTGTAAGTGCATGTCAATAA
ATGCAAATAAATGGTGTAAAACTGCAAAATCTTAAAGTATctataatttt
taaaacctgGTCTAAATAATTTCGTTTCGACAGGATTTATAAATAATATA
ACTTAATGattaatgattaaaaaaatcttcaaatatgaTTATTCGACGAA
GTTTTACTTTTGATCTGTAAATActaatttttgcttttattttttaatgg
tttttctTCTTAATTACTTCATTAGGAAATTAAGCAAGGTCGAAGAGCTG
GGAATTTGTTTCAAACAGCAGGCTCAAATGCATCAACGAATGAAAGTAAC
AACAATGCAATTAAAACAGAGGTAAGTGAAGTTTTCTCAAAAACTCTACG
ATCCCACAGGAGCCACAAATAATCAATTTAAGGTTCAGAAGTAGGAACAA
ATTTGGACTAAATTTGATTGACCAAATCTGATAGATAACAGGAACTTTTT
GTTTGAAACAGAAAACGTTGCTTCGAAAATTGATAAATGAGGGTTGATTG
ATCACATTCGCTGATTTAGCTTTTTATAAGCACTGGACGGTTATTTCCTT
TGAACTCTGTATTATGTTTTATTTATCACATTGCTCATTGAACTTGGATG
TCAATTTTTTATCATCGTTTGTTTGGTTTATTTGTAAATCCTCATCTATT
AGTTAAAATCAGCCCAAACACAAATTTAACACTCtcttcgaaaataattt
ttcttgaaattattAGGCATCTTCATCACTGTCACCGAAACCAGCACGAA
AGCAGGGAGGATGGGCGGATgatataaaagaaaagaaaagagggtaatta
aaagtgaatttttttattcgtTTGAGCACAGCCTTTTTGACCCTATCGAA
TTTAAAGGTTTGATCGAAATTACCACAAGAATTTAATTATTTTCCTATTA
AGCTGGATGCCTAATTTCAAATACCTACATAAACAAAAATCTAGTCATAT
GCTTGGATATATAATAAATATTGTTCTTTTTAGCATGGCAGCAAGAAAAT
AAGCGAAGCGATAAATAACGTGATcgcttttatttttatgtttttttatt
tctatatcgcaaatcaaaaataaaagatatttattttattcCAGACATGC
CCTTCCAGCACCCCCTccccaaaattttgaaatcttcatccaattgactt
gaaatttttcaagtgtgcaccaaatatgaattgtcatctttggtgaaaat
tttagCATCACCGATGACATCATTGCCACTTgatgacgtcttcatttttt
gataagcaaaaaAGGACCccctctaactttttttcactttaatatttttt
gctcaaatatTGAGCAACTCCACGAGGCATTTATTTTTGGGGCAcatggt
aattttttttccacCTGCCGGTatggtgtattttacagaccggtccaaAA
TTACCCTTTTTGCCTAAATCAGCCCTAGGATACATGTCTAGTCTACATGC
CATGTCTAGTGATTGGAAGATGCTGTTTAATCCTGTTTGGAACATGGATT
GATAATAAACTAGTTGTTAACATAAAAGTATCATAAAAGAggattaaaaa
tgtttattttttagtgATGAAGGCAGTGATAACGAGCAAGATGATGAAGG
GTAATCAAAATTAAACATAAACCACTAAATTTTAAATATATTCGATAAAA
TTGTTTAAGTAAACTTAACTCCAGACACCAGGATAAAAATTAAAACCATA
GTCAGAGttgctttgttttgttttcatctCTTAACAAATATCTCTACTAC
CAGTGAAACCTCTAGCAAGGATAAAAAGTTTGTTGCTCTCTTCTTCACCA
CTcgtgattatcttttcaacggttgATTAAGGTATTTGTTAAGAAAAGAC
AGGCAAACCTTAAATTATTGCACACCTATCGTGAATTGAATAGACAAATA
TACTATAATAATTAATATCTAATGATGGTTTAGAATAAATTGAATAACTT
AGGAGAATTTATAAGCATTTTAAATTAAAGATTTTAATCCCTTAAAAACG
TTATTCTCGCTAAAGaccttggtaatggtttggGAAACTAAGACATATTT
TATTTActatgaattttattttgtaggaaatttggaagaatgttGGAAGA
AGAAGAGTAAGTTTTTAGTTTAATCAATAGATCCATGTAGAAAACGCTCC
TGTAAATCCATACTTTCACCTCCGAGCTCCCCTCTGTCACGATTTGGGAC
CATTCTACTTATCATCACTAAAGTTCATTCGCTTGCTTGCCCTTCCTCAA
ACAATGCTTCGATCGTAAAACAAGAATTAGTGCACACTAAATATAAGATA
TATCAAAGTGAATATACGATTCTGACTAAAACCTTCAGAACTGAAAGATA
TACCATGAAGGTAAGCTACTAAActgatgaaaaatattttacactaAAAC
ATTTACATTAAAAAAGTCGGTAGAAGAATGTAGGATgttttttctgagtt
tttttACTGAGTTTTTCTTTATCCACACATCCAGCGAGCGATTGAAACAA
GATGCGACAGTAGTTTTGGATAATGATGGTGATGACATTCCAATCATCCC
TGAACTTGATGACGTCACTGAAGATGACATGGCTTCACAAGTCGCTGCAC
CTCCGAGGTTTGCGTAATGCGTGCACTTCGTTCAAGGTCGTATtgaatac
agtagagtctctcgAACCTCAACTCaaatgtctctttaactcaaacaagt
ttcGCCATCCCCTCTTTTAACAAAGCCTTATAAACCAATCTCCATTACTT
GAAGTTCACTCACTTCACTCGAACAAAAATTTGTGTTCCCTTGTTATTGA
GACGCCACTGTATCAAAGAACGTTCAGAATCGACAATCTCCATTTCGTAA
CCAACACCGATATTAAAATCACCTATCTTTGTCTGATTAAATGTTTCGTA
TAGGAAAGCTTTCTCTTCCTATACTATAAATTAAATTCCAGTGAAATTTA
GTTTTCCAATGAATTACTTCCAAACTAATTGTTTTATATAGTGTGCTGGT
CACAAGGATTGCAACCTACAAAGAACTTGATCATGATTTCGAAAAACATA
CAGGACTTTTGACATTGGTATGTAGTTGCTTATTGTAAATCAAGTAAAAG
TTCGTTATTATCTTTGGAGATCAAGAAATATATCAAGGGATGAAGTCATA
TTATATTCTTTACTTTGGAGCCTTGATAATTAGATGTTGCTCTTAATGCT
GCATGTTATACTTTTCCATATGCATTTATGAATATTGATTGAAATTTTAG
GACGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAATC
TGAAATACAAGAGGTAACTTACAATTCttcgattattttttttttcaata
gaacAGAAGAGGGAAAGAGGTGAGAGGTCTTTCATTTAATTTCTTCCCGT
CTTTAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTGAGGTATC
ATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGCA
ACAAAGATTAAATCTGATTATAACTTTGCATACACAAAAGGCTTGGCTTC
TGGTACCTCTTCGCAGGCCTTTGTCGATGCTCTAAGGAGTAGAAGATAGG
CATTTAAATTATTATCATTTTTAGCGCACAATATGTACATATAATAATGT
AAATAATGGAAACAAATTTTaccatcaaaatattcaaagcAACTTTACTA
TCACAacaaattatattccattattgCTGGTTCTTTGAAATTGCAATTGC
TACCCCATGAGCCAATTTTGAAGAATTCGCGTGGATTTAGTTTCGGGAGT
CTGTGAACTAGTAAGATTTTAGATCTGTTATCATGTTGTTCTGGGTGAGA
AACAGAAGTGCTTACATTATTTTTCATTACTTTCGAGTAGGTTTTATAAG
CTTATGAAAAGACAGAAAAACTGGTTACGATGTGTTAAgattaaaaaaca
taaaaagaaattgaaaaaaggaaATGTAGATTAATTACTAATTCAGGGGA
CCACCAATTTTTGAACCTACCTCgcaggtcctttaaattaaccgatgttc
tTACGTCCGTTCGTCTggtaccagcttttctcgggattggttcattagtt
ttttctgatgttttgcacagtgatgcaaaatgcctgacgtccgcgctcga
taggatcgatcatcggaacggctcgatgacggatcgatatgtgatcgatg
gattacttaacgatccggatatgAGATCGATAGacgatcgatactcaaga
tttttttaagcttatgattagttatcgattatttatcgatctatcgtcga
tcttttatcgatcttttcgaccctatcgactcgNAGGTATCATCCGAATT
GCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGCAACAAAGATT
AAATCTGATTATAACTTTGCATACACCAAAGGCTTGGCTTCTGGTACCTC
TTCGCAGGCCTTTGTCGATGCTCTAGGGAGTAGAAGATAGGCATTTAAAT
TATTATCATTTTTAGCGCACAATATGTACATATAGAATAATGTAAATAAT
GGAAACAAATTTTaccatcaaaatattcaaagcAACTTTACTATCACAac
aaattatattccattattgCTGGTTCTTTGAAATTGCAATTGCTACCCCA
TGAGCCAATTTTGAAGAATTCGCGTGGATTTAGTTTCGGGAGTCTGTGAA
CTAGTAAGATTTTAGATCTGTTATCATGTTGTTCTGGGTGAGAAACAGAA
GTGCTTACATTATTTTTCATTACTTTCGAGTAGGTTTTATAAGCTTATGA
AAAGAC

Coding sequence (CDS) from alignment at scaffold_391:66156..71161+

>TCONS_00063507 ID=TCONS_00063507|Name=TCONS_00063507|organism=Clytia hemisphaerica|type=CDS|length=6270bp|location=Sequence derived from alignment at scaffold_391:66156..71161+ (Clytia hemisphaerica)
ATGGAAGACTCACCTAAAAGGGAAATTAAGCAAGGTCGAAGAGCTGGGAA
TTTGTTTCAAACAGCAGGCTCAAATGCATCAACGAATGAAAGTAACAACA
ATGCAATTAAAACAGAGGCATCTTCATCACTGTCACCGAAACCAGCACGA
AAGCAGGGAGGATGGGCGGATgatataaaagaaaagaaaagaggtgATGA
AGGCAGTGATAACGAGCAAGATGATGAAGGgaaatttggaagaatgttGG
AAGAAGAAGACGAGCGATTGAAACAAGATGCGACAGTAGTTTTGGATAAT
GATGGTGATGACATTCCAATCATCCCTGAACTTGATGACGTCACTGAAGA
TGACATGGCTTCACAAGTCGCTGCACCTCCGAGTGTGCTGGTCACAAGGA
TTGCAACCTACAAAGAACTTGATCATGATTTCGAAAAACATACAGGACTT
TTGACATTGGACGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGC
ACCAGAATCTGAAATACAAGAGGCTGACAAGGCATGGAATTGGGATCGTG
TTTTTACTGAGGTATCATCCGAATTGCGTTCTGAATGGGAACAAACCAAA
TCACTAACATCCAGCAACAAAGATTAAATGGAAGACTCACCTAAAAGGGA
AATTAAGCAAGGTCGAAGAGCTGGGAATTTGTTTCAAACAGCAGGCTCAA
ATGCATCAACGAATGAAAGTAACAACAATGCAATTAAAACAGAGGCATCT
TCATCACTGTCACCGAAACCAGCACGAAAGCAGGGAGGATGGGCGGATga
tataaaagaaaagaaaagaggtgATGAAGGCAGTGATAACGAGCAAGATG
ATGAAGGgaaatttggaagaatgttGGAAGAAGAAGACGAGCGATTGAAA
CAAGATGCGACAGTAGTTTTGGATAATGATGGTGATGACATTCCAATCAT
CCCTGAACTTGATGACGTCACTGAAGATGACATGGCTTCACAAGTCGCTG
CACCTCCGAGTGTGCTGGTCACAAGGATTGCAACCTACAAAGAACTTGAT
CATGATTTCGAAAAACATACAGGACTTTTGACATTGGACGGTGATATTGA
TCTCAAATTATTGGGAAATGTTCTTGCACCAGAATCTGAAATACAAGAGG
CTGACAAGGCATGGAATTGGGATCGTGTTTTTACTGAGGTATCATCCGAA
TTGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGCAACAAAGA
TTAAATGGAAGACTCACCTAAAAGGGAAATTAAGCAAGGTCGAAGAGCTG
GGAATTTGTTTCAAACAGCAGGCTCAAATGCATCAACGAATGAAAGTAAC
AACAATGCAATTAAAACAGAGGCATCTTCATCACTGTCACCGAAACCAGC
ACGAAAGCAGGGAGGATGGGCGGATgatataaaagaaaagaaaagaggtg
ATGAAGGCAGTGATAACGAGCAAGATGATGAAGGgaaatttggaagaatg
ttGGAAGAAGAAGACGAGCGATTGAAACAAGATGCGACAGTAGTTTTGGA
TAATGATGGTGATGACATTCCAATCATCCCTGAACTTGATGACGTCACTG
AAGATGACATGGCTTCACAAGTCGCTGCACCTCCGAGTGTGCTGGTCACA
AGGATTGCAACCTACAAAGAACTTGATCATGATTTCGAAAAACATACAGG
ACTTTTGACATTGGACGGTGATATTGATCTCAAATTATTGGGAAATGTTC
TTGCACCAGAATCTGAAATACAAGAGGCTGACAAGGCATGGAATTGGGAT
CGTGTTTTTACTGAGGTATCATCCGAATTGCGTTCTGAATGGGAACAAAC
CAAATCACTAACATCCAGCAACAAAGATTAAATGGAAGACTCACCTAAAA
GGGAAATTAAGCAAGGTCGAAGAGCTGGGAATTTGTTTCAAACAGCAGGC
TCAAATGCATCAACGAATGAAAGTAACAACAATGCAATTAAAACAGAGGC
ATCTTCATCACTGTCACCGAAACCAGCACGAAAGCAGGGAGGATGGGCGG
ATgatataaaagaaaagaaaagaggtgATGAAGGCAGTGATAACGAGCAA
GATGATGAAGGgaaatttggaagaatgttGGAAGAAGAAGACGAGCGATT
GAAACAAGATGCGACAGTAGTTTTGGATAATGATGGTGATGACATTCCAA
TCATCCCTGAACTTGATGACGTCACTGAAGATGACATGGCTTCACAAGTC
GCTGCACCTCCGAGTGTGCTGGTCACAAGGATTGCAACCTACAAAGAACT
TGATCATGATTTCGAAAAACATACAGGACTTTTGACATTGGACGGTGATA
TTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAATCTGAAATACAA
GAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTGAGGTATCATC
CGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGCAACA
AAGATTAAATGGAAGACTCACCTAAAAGGGAAATTAAGCAAGGTCGAAGA
GCTGGGAATTTGTTTCAAACAGCAGGCTCAAATGCATCAACGAATGAAAG
TAACAACAATGCAATTAAAACAGAGGCATCTTCATCACTGTCACCGAAAC
CAGCACGAAAGCAGGGAGGATGGGCGGATgatataaaagaaaagaaaaga
ggtgATGAAGGCAGTGATAACGAGCAAGATGATGAAGGgaaatttggaag
aatgttGGAAGAAGAAGACGAGCGATTGAAACAAGATGCGACAGTAGTTT
TGGATAATGATGGTGATGACATTCCAATCATCCCTGAACTTGATGACGTC
ACTGAAGATGACATGGCTTCACAAGTCGCTGCACCTCCGAGTGTGCTGGT
CACAAGGATTGCAACCTACAAAGAACTTGATCATGATTTCGAAAAACATA
CAGGACTTTTGACATTGGACGGTGATATTGATCTCAAATTATTGGGAAAT
GTTCTTGCACCAGAATCTGAAATACAAGAGGCTGACAAGGCATGGAATTG
GGATCGTGTTTTTACTGAGGTATCATCCGAATTGCGTTCTGAATGGGAAC
AAACCAAATCACTAACATCCAGCAACAAAGATTAAATGGAAGACTCACCT
AAAAGGGAAATTAAGCAAGGTCGAAGAGCTGGGAATTTGTTTCAAACAGC
AGGCTCAAATGCATCAACGAATGAAAGTAACAACAATGCAATTAAAACAG
AGGCATCTTCATCACTGTCACCGAAACCAGCACGAAAGCAGGGAGGATGG
GCGGATgatataaaagaaaagaaaagaggtgATGAAGGCAGTGATAACGA
GCAAGATGATGAAGGgaaatttggaagaatgttGGAAGAAGAAGACGAGC
GATTGAAACAAGATGCGACAGTAGTTTTGGATAATGATGGTGATGACATT
CCAATCATCCCTGAACTTGATGACGTCACTGAAGATGACATGGCTTCACA
AGTCGCTGCACCTCCGAGTGTGCTGGTCACAAGGATTGCAACCTACAAAG
AACTTGATCATGATTTCGAAAAACATACAGGACTTTTGACATTGGACGGT
GATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAATCTGAAAT
ACAAGAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTGAGGTAT
CATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCAGC
AACAAAGATTAAATGGAAGACTCACCTAAAAGGGAAATTAAGCAAGGTCG
AAGAGCTGGGAATTTGTTTCAAACAGCAGGCTCAAATGCATCAACGAATG
AAAGTAACAACAATGCAATTAAAACAGAGGCATCTTCATCACTGTCACCG
AAACCAGCACGAAAGCAGGGAGGATGGGCGGATgatataaaagaaaagaa
aagaggtgATGAAGGCAGTGATAACGAGCAAGATGATGAAGGgaaatttg
gaagaatgttGGAAGAAGAAGACGAGCGATTGAAACAAGATGCGACAGTA
GTTTTGGATAATGATGGTGATGACATTCCAATCATCCCTGAACTTGATGA
CGTCACTGAAGATGACATGGCTTCACAAGTCGCTGCACCTCCGAGTGTGC
TGGTCACAAGGATTGCAACCTACAAAGAACTTGATCATGATTTCGAAAAA
CATACAGGACTTTTGACATTGGACGGTGATATTGATCTCAAATTATTGGG
AAATGTTCTTGCACCAGAATCTGAAATACAAGAGGCTGACAAGGCATGGA
ATTGGGATCGTGTTTTTACTGAGGTATCATCCGAATTGCGTTCTGAATGG
GAACAAACCAAATCACTAACATCCAGCAACAAAGATTAAATGGAAGACTC
ACCTAAAAGGGAAATTAAGCAAGGTCGAAGAGCTGGGAATTTGTTTCAAA
CAGCAGGCTCAAATGCATCAACGAATGAAAGTAACAACAATGCAATTAAA
ACAGAGGCATCTTCATCACTGTCACCGAAACCAGCACGAAAGCAGGGAGG
ATGGGCGGATgatataaaagaaaagaaaagaggtgATGAAGGCAGTGATA
ACGAGCAAGATGATGAAGGgaaatttggaagaatgttGGAAGAAGAAGAC
GAGCGATTGAAACAAGATGCGACAGTAGTTTTGGATAATGATGGTGATGA
CATTCCAATCATCCCTGAACTTGATGACGTCACTGAAGATGACATGGCTT
CACAAGTCGCTGCACCTCCGAGTGTGCTGGTCACAAGGATTGCAACCTAC
AAAGAACTTGATCATGATTTCGAAAAACATACAGGACTTTTGACATTGGA
CGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAATCTG
AAATACAAGAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTGAG
GTATCATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACATC
CAGCAACAAAGATTAAATGGAAGACTCACCTAAAAGGGAAATTAAGCAAG
GTCGAAGAGCTGGGAATTTGTTTCAAACAGCAGGCTCAAATGCATCAACG
AATGAAAGTAACAACAATGCAATTAAAACAGAGGCATCTTCATCACTGTC
ACCGAAACCAGCACGAAAGCAGGGAGGATGGGCGGATgatataaaagaaa
agaaaagaggtgATGAAGGCAGTGATAACGAGCAAGATGATGAAGGgaaa
tttggaagaatgttGGAAGAAGAAGACGAGCGATTGAAACAAGATGCGAC
AGTAGTTTTGGATAATGATGGTGATGACATTCCAATCATCCCTGAACTTG
ATGACGTCACTGAAGATGACATGGCTTCACAAGTCGCTGCACCTCCGAGT
GTGCTGGTCACAAGGATTGCAACCTACAAAGAACTTGATCATGATTTCGA
AAAACATACAGGACTTTTGACATTGGACGGTGATATTGATCTCAAATTAT
TGGGAAATGTTCTTGCACCAGAATCTGAAATACAAGAGGCTGACAAGGCA
TGGAATTGGGATCGTGTTTTTACTGAGGTATCATCCGAATTGCGTTCTGA
ATGGGAACAAACCAAATCACTAACATCCAGCAACAAAGATTAAATGGAAG
ACTCACCTAAAAGGGAAATTAAGCAAGGTCGAAGAGCTGGGAATTTGTTT
CAAACAGCAGGCTCAAATGCATCAACGAATGAAAGTAACAACAATGCAAT
TAAAACAGAGGCATCTTCATCACTGTCACCGAAACCAGCACGAAAGCAGG
GAGGATGGGCGGATgatataaaagaaaagaaaagaggtgATGAAGGCAGT
GATAACGAGCAAGATGATGAAGGgaaatttggaagaatgttGGAAGAAGA
AGACGAGCGATTGAAACAAGATGCGACAGTAGTTTTGGATAATGATGGTG
ATGACATTCCAATCATCCCTGAACTTGATGACGTCACTGAAGATGACATG
GCTTCACAAGTCGCTGCACCTCCGAGTGTGCTGGTCACAAGGATTGCAAC
CTACAAAGAACTTGATCATGATTTCGAAAAACATACAGGACTTTTGACAT
TGGACGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAA
TCTGAAATACAAGAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTAC
TGAGGTATCATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAA
CATCCAGCAACAAAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039811XLOC_039811Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063507-proteinTCONS_00063507-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063507-exon-scaffold_391-1491911889:66156..66217TCONS_00063507-exon-scaffold_391-1491911889:66156..66217Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:66156..66217TCONS_00063507-exon-scaffold_391-1510915933:66156..66217Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:66156..66217TCONS_00063507-exon-scaffold_391-1575043694:66156..66217Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1491911889:66581..66676TCONS_00063507-exon-scaffold_391-1491911889:66581..66676Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:66581..66676TCONS_00063507-exon-scaffold_391-1510915933:66581..66676Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:66581..66676TCONS_00063507-exon-scaffold_391-1575043694:66581..66676Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1491911889:67072..67148TCONS_00063507-exon-scaffold_391-1491911889:67072..67148Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:67072..67148TCONS_00063507-exon-scaffold_391-1510915933:67072..67148Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:67072..67148TCONS_00063507-exon-scaffold_391-1575043694:67072..67148Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1491911889:67920..67955TCONS_00063507-exon-scaffold_391-1491911889:67920..67955Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:67920..67955TCONS_00063507-exon-scaffold_391-1510915933:67920..67955Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:67920..67955TCONS_00063507-exon-scaffold_391-1575043694:67920..67955Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1491911889:68432..68461TCONS_00063507-exon-scaffold_391-1491911889:68432..68461Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:68432..68461TCONS_00063507-exon-scaffold_391-1510915933:68432..68461Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:68432..68461TCONS_00063507-exon-scaffold_391-1575043694:68432..68461Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1491911889:68840..68962TCONS_00063507-exon-scaffold_391-1491911889:68840..68962Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:68840..68962TCONS_00063507-exon-scaffold_391-1510915933:68840..68962Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:68840..68962TCONS_00063507-exon-scaffold_391-1575043694:68840..68962Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1491911889:69347..69422TCONS_00063507-exon-scaffold_391-1491911889:69347..69422Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:69347..69422TCONS_00063507-exon-scaffold_391-1510915933:69347..69422Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:69347..69422TCONS_00063507-exon-scaffold_391-1575043694:69347..69422Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1491911889:69606..69668TCONS_00063507-exon-scaffold_391-1491911889:69606..69668Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:69606..69668TCONS_00063507-exon-scaffold_391-1510915933:69606..69668Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:69606..69668TCONS_00063507-exon-scaffold_391-1575043694:69606..69668Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1491911889:69762..69800TCONS_00063507-exon-scaffold_391-1491911889:69762..69800Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:69762..69800TCONS_00063507-exon-scaffold_391-1510915933:69762..69800Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:69762..69800TCONS_00063507-exon-scaffold_391-1575043694:69762..69800Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1491911889:70692..71161TCONS_00063507-exon-scaffold_391-1491911889:70692..71161Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1510915933:70692..71161TCONS_00063507-exon-scaffold_391-1510915933:70692..71161Clytia hemisphaericaexon
TCONS_00063507-exon-scaffold_391-1575043694:70692..71161TCONS_00063507-exon-scaffold_391-1575043694:70692..71161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_391supercontigscaffold_391:66156..71161 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	6.46579e-06	1.25715e-06	0.0754448	0.164777	0.000672223	0.00013071	0.180855	0.198319	0.0351642	0.212978	0.10295	0.248249	0.019745	0.148294	0.445733	0.139326	0.107729	0.0740613	0.424543	0.419135	0.473197	0.000336522	0.246301	0.127598	0.194562	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029302IFT43
Vocabulary: Cellular Component
TermDefinition
GO:0030991intraciliary transport particle A
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0030991 intraciliary transport particle A
Blast
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BLAST of TCONS_00063507 vs. Swiss-Prot (Human)
Match: IFT43 (Intraflagellar transport protein 43 homolog OS=Homo sapiens GN=IFT43 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 3.925e-26
Identity = 79/189 (41.80%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:   69 KQGRRAGNLFQTXXXXXXXXXXXXXXIKTEASSSLSPKPARKQGGWA-DDIKEKKRGDEGSDNEQDDEGKFGRMLEEEDERLKQDATVVLDNDGDDIPIIPELDDVTEDDMASQVAAPPSVLVTRIATYKELDHDFEKHTXXXXXXXXXXXXXXXNVLAPESEIQEADKAWNWDRVFTEVSSELRSEWE 632
            K GRRA    Q +    +     N+++     +S +  P  +QGGWA D +K  K   + S+             E ED RL+  +    D  GD IPIIP+L++V E+D   QVAAPPS+ + R+ TY++LD+D  K++ + TLDG+IDLKLL  VLAPE E++E D  W+WD +FTEVSSE+ +EW+
Sbjct:   21 KMGRRAQ---QESAQAENHLNGKNSSLTLTGETSSAKLPRCRQGGWAGDSVKASKFRRKASE-------------EIEDFRLRPQSLNGSDYGGD-IPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEWD 192
The following BLAST results are available for this feature:
BLAST of TCONS_00063507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT433.925e-2641.80Intraflagellar transport protein 43 homolog OS=Hom... [more]
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