TCONS_00063508 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063508
Unique Name	TCONS_00063508
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	922

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_391:66694..71161+

transcript sequence

>TCONS_00063508 ID=TCONS_00063508|Name=TCONS_00063508|organism=Clytia hemisphaerica|type=transcript|length=922bp
AAAAACTCTACGATCCCACAGGAGCCACAAATAATCAATTTAAGGCATCT
TCATCACTGTCACCGAAACCAGCACGAAAGCAGGGAGGATGGGCGGATga
tataaaagaaaagaaaagagggaaatttggaagaatgttGGAAGAAGAAG
ACGAGCGATTGAAACAAGATGCGACAGTAGTTTTGGATAATGATGGTGAT
GACATTCCAATCATCCCTGAACTTGATGACGTCACTGAAGATGACATGGC
TTCACAAGTCGCTGCACCTCCGAGTGTGCTGGTCACAAGGATTGCAACCT
ACAAAGAACTTGATCATGATTTCGAAAAACATACAGGACTTTTGACATTG
GACGGTGATATTGATCTCAAATTATTGGGAAATGTTCTTGCACCAGAATC
TGAAATACAAGAGGCTGACAAGGCATGGAATTGGGATCGTGTTTTTACTG
AGGTATCATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACA
TCCAGCAACAAAGATTAAATCTGATTATAACTTTGCATACACCAAAGGCT
TGGCTTCTGGTACCTCTTCGCAGGCCTTTGTCGATGCTCTAGGGAGTAGA
AGATAGGCATTTAAATTATTATCATTTTTAGCGCACAATATGTACATATA
GAATAATGTAAATAATGGAAACAAATTTTaccatcaaaatattcaaagcA
ACTTTACTATCACAacaaattatattccattattgCTGGTTCTTTGAAAT
TGCAATTGCTACCCCATGAGCCAATTTTGAAGAATTCGCGTGGATTTAGT
TTCGGGAGTCTGTGAACTAGTAAGATTTTAGATCTGTTATCATGTTGTTC
TGGGTGAGAAACAGAAGTGCTTACATTATTTTTCATTACTTTCGAGTAGG
TTTTATAAGCTTATGAAAAGAC

Run BLAST on NCBI

transcript from alignment at scaffold_391:66694..71161+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063508 ID=TCONS_00063508|Name=TCONS_00063508|organism=Clytia hemisphaerica|type=transcript|length=4468bp|location=Sequence derived from alignment at scaffold_391:66694..71161+ (Clytia hemisphaerica)
AAAAACTCTACGATCCCACAGGAGCCACAAATAATCAATTTAAGGTTCAG
AAGTAGGAACAAATTTGGACTAAATTTGATTGACCAAATCTGATAGATAA
CAGGAACTTTTTGTTTGAAACAGAAAACGTTGCTTCGAAAATTGATAAAT
GAGGGTTGATTGATCACATTCGCTGATTTAGCTTTTTATAAGCACTGGAC
GGTTATTTCCTTTGAACTCTGTATTATGTTTTATTTATCACATTGCTCAT
TGAACTTGGATGTCAATTTTTTATCATCGTTTGTTTGGTTTATTTGTAAA
TCCTCATCTATTAGTTAAAATCAGCCCAAACACAAATTTAACACTCtctt
cgaaaataatttttcttgaaattattAGGCATCTTCATCACTGTCACCGA
AACCAGCACGAAAGCAGGGAGGATGGGCGGATgatataaaagaaaagaaa
agagggtaattaaaagtgaatttttttattcgtTTGAGCACAGCCTTTTT
GACCCTATCGAATTTAAAGGTTTGATCGAAATTACCACAAGAATTTAATT
ATTTTCCTATTAAGCTGGATGCCTAATTTCAAATACCTACATAAACAAAA
ATCTAGTCATATGCTTGGATATATAATAAATATTGTTCTTTTTAGCATGG
CAGCAAGAAAATAAGCGAAGCGATAAATAACGTGATcgcttttattttta
tgtttttttatttctatatcgcaaatcaaaaataaaagatatttatttta
ttcCAGACATGCCCTTCCAGCACCCCCTccccaaaattttgaaatcttca
tccaattgacttgaaatttttcaagtgtgcaccaaatatgaattgtcatc
tttggtgaaaattttagCATCACCGATGACATCATTGCCACTTgatgacg
tcttcattttttgataagcaaaaaAGGACCccctctaactttttttcact
ttaatattttttgctcaaatatTGAGCAACTCCACGAGGCATTTATTTTT
GGGGCAcatggtaattttttttccacCTGCCGGTatggtgtattttacag
accggtccaaAATTACCCTTTTTGCCTAAATCAGCCCTAGGATACATGTC
TAGTCTACATGCCATGTCTAGTGATTGGAAGATGCTGTTTAATCCTGTTT
GGAACATGGATTGATAATAAACTAGTTGTTAACATAAAAGTATCATAAAA
GAggattaaaaatgtttattttttagtgATGAAGGCAGTGATAACGAGCA
AGATGATGAAGGGTAATCAAAATTAAACATAAACCACTAAATTTTAAATA
TATTCGATAAAATTGTTTAAGTAAACTTAACTCCAGACACCAGGATAAAA
ATTAAAACCATAGTCAGAGttgctttgttttgttttcatctCTTAACAAA
TATCTCTACTACCAGTGAAACCTCTAGCAAGGATAAAAAGTTTGTTGCTC
TCTTCTTCACCACTcgtgattatcttttcaacggttgATTAAGGTATTTG
TTAAGAAAAGACAGGCAAACCTTAAATTATTGCACACCTATCGTGAATTG
AATAGACAAATATACTATAATAATTAATATCTAATGATGGTTTAGAATAA
ATTGAATAACTTAGGAGAATTTATAAGCATTTTAAATTAAAGATTTTAAT
CCCTTAAAAACGTTATTCTCGCTAAAGaccttggtaatggtttggGAAAC
TAAGACATATTTTATTTActatgaattttattttgtaggaaatttggaag
aatgttGGAAGAAGAAGAGTAAGTTTTTAGTTTAATCAATAGATCCATGT
AGAAAACGCTCCTGTAAATCCATACTTTCACCTCCGAGCTCCCCTCTGTC
ACGATTTGGGACCATTCTACTTATCATCACTAAAGTTCATTCGCTTGCTT
GCCCTTCCTCAAACAATGCTTCGATCGTAAAACAAGAATTAGTGCACACT
AAATATAAGATATATCAAAGTGAATATACGATTCTGACTAAAACCTTCAG
AACTGAAAGATATACCATGAAGGTAAGCTACTAAActgatgaaaaatatt
ttacactaAAACATTTACATTAAAAAAGTCGGTAGAAGAATGTAGGATgt
tttttctgagtttttttACTGAGTTTTTCTTTATCCACACATCCAGCGAG
CGATTGAAACAAGATGCGACAGTAGTTTTGGATAATGATGGTGATGACAT
TCCAATCATCCCTGAACTTGATGACGTCACTGAAGATGACATGGCTTCAC
AAGTCGCTGCACCTCCGAGGTTTGCGTAATGCGTGCACTTCGTTCAAGGT
CGTATtgaatacagtagagtctctcgAACCTCAACTCaaatgtctcttta
actcaaacaagtttcGCCATCCCCTCTTTTAACAAAGCCTTATAAACCAA
TCTCCATTACTTGAAGTTCACTCACTTCACTCGAACAAAAATTTGTGTTC
CCTTGTTATTGAGACGCCACTGTATCAAAGAACGTTCAGAATCGACAATC
TCCATTTCGTAACCAACACCGATATTAAAATCACCTATCTTTGTCTGATT
AAATGTTTCGTATAGGAAAGCTTTCTCTTCCTATACTATAAATTAAATTC
CAGTGAAATTTAGTTTTCCAATGAATTACTTCCAAACTAATTGTTTTATA
TAGTGTGCTGGTCACAAGGATTGCAACCTACAAAGAACTTGATCATGATT
TCGAAAAACATACAGGACTTTTGACATTGGTATGTAGTTGCTTATTGTAA
ATCAAGTAAAAGTTCGTTATTATCTTTGGAGATCAAGAAATATATCAAGG
GATGAAGTCATATTATATTCTTTACTTTGGAGCCTTGATAATTAGATGTT
GCTCTTAATGCTGCATGTTATACTTTTCCATATGCATTTATGAATATTGA
TTGAAATTTTAGGACGGTGATATTGATCTCAAATTATTGGGAAATGTTCT
TGCACCAGAATCTGAAATACAAGAGGTAACTTACAATTCttcgattattt
tttttttcaatagaacAGAAGAGGGAAAGAGGTGAGAGGTCTTTCATTTA
ATTTCTTCCCGTCTTTAGGCTGACAAGGCATGGAATTGGGATCGTGTTTT
TACTGAGGTATCATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCAC
TAACATCCAGCAACAAAGATTAAATCTGATTATAACTTTGCATACACAAA
AGGCTTGGCTTCTGGTACCTCTTCGCAGGCCTTTGTCGATGCTCTAAGGA
GTAGAAGATAGGCATTTAAATTATTATCATTTTTAGCGCACAATATGTAC
ATATAATAATGTAAATAATGGAAACAAATTTTaccatcaaaatattcaaa
gcAACTTTACTATCACAacaaattatattccattattgCTGGTTCTTTGA
AATTGCAATTGCTACCCCATGAGCCAATTTTGAAGAATTCGCGTGGATTT
AGTTTCGGGAGTCTGTGAACTAGTAAGATTTTAGATCTGTTATCATGTTG
TTCTGGGTGAGAAACAGAAGTGCTTACATTATTTTTCATTACTTTCGAGT
AGGTTTTATAAGCTTATGAAAAGACAGAAAAACTGGTTACGATGTGTTAA
gattaaaaaacataaaaagaaattgaaaaaaggaaATGTAGATTAATTAC
TAATTCAGGGGACCACCAATTTTTGAACCTACCTCgcaggtcctttaaat
taaccgatgttctTACGTCCGTTCGTCTggtaccagcttttctcgggatt
ggttcattagttttttctgatgttttgcacagtgatgcaaaatgcctgac
gtccgcgctcgataggatcgatcatcggaacggctcgatgacggatcgat
atgtgatcgatggattacttaacgatccggatatgAGATCGATAGacgat
cgatactcaagatttttttaagcttatgattagttatcgattatttatcg
atctatcgtcgatcttttatcgatcttttcgaccctatcgactcgNAGGT
ATCATCCGAATTGCGTTCTGAATGGGAACAAACCAAATCACTAACATCCA
GCAACAAAGATTAAATCTGATTATAACTTTGCATACACCAAAGGCTTGGC
TTCTGGTACCTCTTCGCAGGCCTTTGTCGATGCTCTAGGGAGTAGAAGAT
AGGCATTTAAATTATTATCATTTTTAGCGCACAATATGTACATATAGAAT
AATGTAAATAATGGAAACAAATTTTaccatcaaaatattcaaagcAACTT
TACTATCACAacaaattatattccattattgCTGGTTCTTTGAAATTGCA
ATTGCTACCCCATGAGCCAATTTTGAAGAATTCGCGTGGATTTAGTTTCG
GGAGTCTGTGAACTAGTAAGATTTTAGATCTGTTATCATGTTGTTCTGGG
TGAGAAACAGAAGTGCTTACATTATTTTTCATTACTTTCGAGTAGGTTTT
ATAAGCTTATGAAAAGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039811	XLOC_039811	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_391	supercontig	scaffold_391:66694..71161 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48067	3.19963	4.00725	0	4.42177	5.90161	4.39971	0	0.898615	0	0	0	0	0.52241	0	0.121271	0	0	0	0.005054	0	2.23977e-09	2.60562	0.64372	0.00760415	0.700225	0	0.22365	1.10006e-05	8.35729e-09

Blast

[Close]

BLAST of TCONS_00063508 vs. Swiss-Prot (Human)
Match: IFT43 (Intraflagellar transport protein 43 homolog OS=Homo sapiens GN=IFT43 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 1.339e-28
Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 3

Query:   39 FKASSSLSPKPARKQGGWADDIKEKKRGKFGRMLEEEDERLKQDATVVLDND-GDDIPIIPELDDVTEDDMASQVAAPPSVLVTRIATYKELDHDFEKHTXXXXXXXXXXXXXXXNVLAPESEIQEADKAWNWDRVFTEVSSELRSEWE 482
                +S +  P  +QGGWA D    K  KF R   EE E  +     +  +D G DIPIIP+L++V E+D   QVAAPPS+ + R+ TY++LD+D  K++ + TLDG+IDLKLL  VLAPE E++E D  W+WD +FTEVSSE+ +EW+
Sbjct:   46 LTGETSSAKLPRCRQGGWAGD--SVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEWD 192

The following BLAST results are available for this feature:

BLAST of TCONS_00063508 vs. Swiss-Prot (Human)

BLAST of TCONS_00063508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IFT43	1.339e-28	47.65	Intraflagellar transport protein 43 homolog OS=Hom...	[more]

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TCONS_00063508 (transcript) - C. hemisphaerica