TCONS_00063512 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063512
Unique NameTCONS_00063512
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1021

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063512 ID=TCONS_00063512|Name=TCONS_00063512|organism=Clytia hemisphaerica|type=transcript|length=1021bp
CAANAACTTGTCACCATGGTTTTCAACATCATCAACGGTCTCGCTCATCT
CCACATGGAAGTCATCGGTACTGAGGGCAAGCGAGCCATGGCTCACAGAG
ACATCAAATCTAAAAACATCTTAGTCAAAGCCAACAGAACATGCTGTATA
GCAGACTTGGGATTGACCGTTCTTCATTCTTCAGTGGATAACAAGGTGGA
CATTCCCACCAACCCGCGTACGGGAACTACGCGCTACCAAGCTCCTGAAC
TTCTCGACAACACTATCAATTTGAGACATTTCGAGTCGTATCGTCGCGCA
GATATGTATGCGTTTGGTCTTTGCGTATGGGAAATTTGTCGGCGGACTGA
TATTTGTGGAGAGGTGGAGAAATATCAGCTACCTTACTTCGATTGTGTAG
AACCAGATCCAAGCCGTGAGCAGATGTACGAGGTGGTATGCATGGACGCC
ATCAGACCTCACATCTCCGAAGATTGGCAACAGGAAGATCGGATGAAAAA
GCTGATCAAGATTATGAAAGAATGTTGGTATTACGAAGGTGCTGCTCGTT
TGACCTCTTTACGCGTCAAGAAAGATCTGTTGCCTCTTTGCCGCTCGCTC
GATATACATGTATGAAGCAAGGGATGAATGAAAGTTATTTATTTCTTACG
GTCCTTTCAAACTATGTCCTAAAACTTCATCAATATTAATTAGTCGTGTG
ATATTTAATAAGTAACTCTGTTTAGATATGCAGAGTTTTTCATAGCTTAT
GATGACAAAACATATTACTCTCTCGATGCAATGAATATGAAATCCGTCCT
CCAAGTTGAAGTGCTCTTTATTTGAACTATGCCGATTCTTATTGGCGTAA
TGGAACTGTACAAGGTCGACTTTGGCCACAAAAGGTTTCTTTCGCgactt
tgtttttttgaaatgttttaattCCCCATTATTTACTCCTAAAATTGTAT
TTAGTTTTCAGTTTGTATTTTATAATGATAGTAGTAATGTAAATACATAA
ATAAACActaataaaaatttc
Run BLAST on NCBI

protein sequence of TCONS_00063512-protein

>TCONS_00063512-protein ID=TCONS_00063512-protein|Name=TCONS_00063512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
QXLVTMVFNIINGLAHLHMEVIGTEGKRAMAHRDIKSKNILVKANRTCCI
ADLGLTVLHSSVDNKVDIPTNPRTGTTRYQAPELLDNTINLRHFESYRRA
DMYAFGLCVWEICRRTDICGEVEKYQLPYFDCVEPDPSREQMYEVVCMDA
IRPHISEDWQQEDRMKKLIKIMKECWYYEGAARLTSLRVKKDLLPLCRSL
DIHV
Run BLAST on NCBI

transcript from alignment at scaffold_391:136410..138279+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063512 ID=TCONS_00063512|Name=TCONS_00063512|organism=Clytia hemisphaerica|type=transcript|length=1870bp|location=Sequence derived from alignment at scaffold_391:136410..138279+ (Clytia hemisphaerica)
CAANAACTTGTCACCATGGTTTTCAACATCATCAACGGTCTCGCTCATCT
CCACATGGAAGTCATCGGTACTGAGGGCAAGCGAGCCATGGCTCACAGAG
ACATCAAATCTAAAAACATCTTAGTCAAAGCCAACAGTAAGAACATACAT
TCTACTAGCCTTTACTAGGCTTTCTAGGCTGTAACGCACGGAAATAACAT
GATATTTCCCGTTATTAGGTTAGGTATTTGCTAACATCCACTTGTTACGC
TTAAAAATTTCAGTTTGAGCCCCTCATGTTCCTATTctaaaagtatttca
aaatggaaattGGGAAGGCTGAACCAAATTCGACAATGATATGCGAGCTC
ATATTCATAATATTTTTAGCTAAGAGACGTCATTATATATCTCCTTCTTT
CTTTAAGGAACATGCTGTATAGCAGACTTGGGATTGACCGTTCTTCATTC
TTCAGTGGATAACAAGGTGGACATTCCCACCAACCCGCGTACGGGAACTA
CGCGCTACCAAGCTCCTGAACTTCTCGACAACACTATCAATTTGAGACAT
TTCGAGTCGTATCGTCGCGCAGATATGTATGCGTTTGGTCTTTGCGTATG
GGAAATTTGTCGGCGGACTGATATTTGTGGTAAGTGCGAGTCACTTGAGA
TCTTAGTGCTGGCAACAAAGGCTTTGCGAAATTCCTATCAAGGATTAAAT
TGTTCTTTAATGGCTTCAATAATCATATAACATAGCATGACGTCTCAATG
TAACCAATTGTAAAGTACTAAATGGCCATAACTCTCGGGGACGCCTTATT
GAAGGAGTTTTTCTGATTTCATGTTGCTTTTATCATgtctttttctaaag
aaaaatgTAGTTGCTGCAGTCGAGTGTAACGtgtctttgaaatttcttca
tCATTATTTCACCTTGCTGTAGGAGAGGTGGAGAAATATCAGCTACCTTA
CTTCGATTGTGTAGAACCAGATCCAAGCCGTGAGCAGATGTACGAGGTGG
TATGCATGGACGCCATCAGACCTCACATCTCCGAAGATTGGCAACAGGAA
GATGTAAGTTGTGTTTTACCTCTTGTCCATTTTAGCTGAACATCTTTAGG
AAAACAGCGTTGtttgttactttaaagttctttcGTCAAAGCGAGGTACG
AAAAGCGACACTTCTAGGTTGAAAGTGCGGTTAGAATATGGATTATGTAT
AAGACGACAGTTAACACATTTTAGATGAACGAAACTCTTACTTTAATAAC
TGATTTCTAGGATTGGAATTCATCTTATTCTAAGTAGTGGTGTCGATAAC
GTTTCATGCTCATTCGATTGTTCTGTTTGAATTTCTAGCGGATGAAAAAG
CTGATCAAGATTATGAAAGAATGTTGGTATTACGAAGGTGCTGCTCGTTT
GACCTCTTTACGCGTCAAGAAAGATCTGTTGCCTCTTTGCCGCTCGCTCG
ATATACATGTATGAAGCAAGGGATGAATGAAAGTTATTTATTTCTTACGG
TCCTTTCAAACTATGTCCTAAAACTTCATCAATATTAATTAGTCGTGTGA
TATTTAATAAGTAACTCTGTTTAGATATGCAGAGTTTTTCATAGCTTATG
ATGACAAAACATATTACTCTCTCGATGCAATGAATATGAAATCCGTCCTC
CAAGTTGAAGTGCTCTTTATTTGAACTATGCCGATTCTTATTGGCGTAAT
GGAACTGTACAAGGTCGACTTTGGCCACAAAAGGTTTCTTTCGCgacttt
gtttttttgaaatgttttaattCCCCATTATTTACTCCTAAAATTGTATT
TAGTTTTCAGTTTGTATTTTATAATGATAGTAGTAATGTAAATACATAAA
TAAACActaataaaaatttc

Coding sequence (CDS) from alignment at scaffold_391:136410..138279+

>TCONS_00063512 ID=TCONS_00063512|Name=TCONS_00063512|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_391:136410..138279+ (Clytia hemisphaerica)
CAANAACTTGTCACCATGGTTTTCAACATCATCAACGGTCTCGCTCATCT
CCACATGGAAGTCATCGGTACTGAGGGCAAGCGAGCCATGGCTCACAGAG
ACATCAAATCTAAAAACATCTTAGTCAAAGCCAACAGAACATGCTGTATA
GCAGACTTGGGATTGACCGTTCTTCATTCTTCAGTGGATAACAAGGTGGA
CATTCCCACCAACCCGCGTACGGGAACTACGCGCTACCAAGCTCCTGAAC
TTCTCGACAACACTATCAATTTGAGACATTTCGAGTCGTATCGTCGCGCA
GATATGTATGCGTTTGGTCTTTGCGTATGGGAAATTTGTCGGCGGACTGA
TATTTGTGGAGAGGTGGAGAAATATCAGCTACCTTACTTCGATTGTGTAG
AACCAGATCCAAGCCGTGAGCAGATGTACGAGGTGGTATGCATGGACGCC
ATCAGACCTCACATCTCCGAAGATTGGCAACAGGAAGATCGGATGAAAAA
GCTGATCAAGATTATGAAAGAATGTTGGTATTACGAAGGTGCTGCTCGTT
TGACCTCTTTACGCGTCAAGAAAGATCTGTTGCCTCTTTGCCGCTCGCTC
GATATACATGTATGACAANAACTTGTCACCATGGTTTTCAACATCATCAA
CGGTCTCGCTCATCTCCACATGGAAGTCATCGGTACTGAGGGCAAGCGAG
CCATGGCTCACAGAGACATCAAATCTAAAAACATCTTAGTCAAAGCCAAC
AGAACATGCTGTATAGCAGACTTGGGATTGACCGTTCTTCATTCTTCAGT
GGATAACAAGGTGGACATTCCCACCAACCCGCGTACGGGAACTACGCGCT
ACCAAGCTCCTGAACTTCTCGACAACACTATCAATTTGAGACATTTCGAG
TCGTATCGTCGCGCAGATATGTATGCGTTTGGTCTTTGCGTATGGGAAAT
TTGTCGGCGGACTGATATTTGTGGAGAGGTGGAGAAATATCAGCTACCTT
ACTTCGATTGTGTAGAACCAGATCCAAGCCGTGAGCAGATGTACGAGGTG
GTATGCATGGACGCCATCAGACCTCACATCTCCGAAGATTGGCAACAGGA
AGATCGGATGAAAAAGCTGATCAAGATTATGAAAGAATGTTGGTATTACG
AAGGTGCTGCTCGTTTGACCTCTTTACGCGTCAAGAAAGATCTGTTGCCT
CTTTGCCGCTCGCTCGATATACATGTATGACAANAACTTGTCACCATGGT
TTTCAACATCATCAACGGTCTCGCTCATCTCCACATGGAAGTCATCGGTA
CTGAGGGCAAGCGAGCCATGGCTCACAGAGACATCAAATCTAAAAACATC
TTAGTCAAAGCCAACAGAACATGCTGTATAGCAGACTTGGGATTGACCGT
TCTTCATTCTTCAGTGGATAACAAGGTGGACATTCCCACCAACCCGCGTA
CGGGAACTACGCGCTACCAAGCTCCTGAACTTCTCGACAACACTATCAAT
TTGAGACATTTCGAGTCGTATCGTCGCGCAGATATGTATGCGTTTGGTCT
TTGCGTATGGGAAATTTGTCGGCGGACTGATATTTGTGGAGAGGTGGAGA
AATATCAGCTACCTTACTTCGATTGTGTAGAACCAGATCCAAGCCGTGAG
CAGATGTACGAGGTGGTATGCATGGACGCCATCAGACCTCACATCTCCGA
AGATTGGCAACAGGAAGATCGGATGAAAAAGCTGATCAAGATTATGAAAG
AATGTTGGTATTACGAAGGTGCTGCTCGTTTGACCTCTTTACGCGTCAAG
AAAGATCTGTTGCCTCTTTGCCGCTCGCTCGATATACATGTATGACAANA
ACTTGTCACCATGGTTTTCAACATCATCAACGGTCTCGCTCATCTCCACA
TGGAAGTCATCGGTACTGAGGGCAAGCGAGCCATGGCTCACAGAGACATC
AAATCTAAAAACATCTTAGTCAAAGCCAACAGAACATGCTGTATAGCAGA
CTTGGGATTGACCGTTCTTCATTCTTCAGTGGATAACAAGGTGGACATTC
CCACCAACCCGCGTACGGGAACTACGCGCTACCAAGCTCCTGAACTTCTC
GACAACACTATCAATTTGAGACATTTCGAGTCGTATCGTCGCGCAGATAT
GTATGCGTTTGGTCTTTGCGTATGGGAAATTTGTCGGCGGACTGATATTT
GTGGAGAGGTGGAGAAATATCAGCTACCTTACTTCGATTGTGTAGAACCA
GATCCAAGCCGTGAGCAGATGTACGAGGTGGTATGCATGGACGCCATCAG
ACCTCACATCTCCGAAGATTGGCAACAGGAAGATCGGATGAAAAAGCTGA
TCAAGATTATGAAAGAATGTTGGTATTACGAAGGTGCTGCTCGTTTGACC
TCTTTACGCGTCAAGAAAGATCTGTTGCCTCTTTGCCGCTCGCTCGATAT
ACATGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039814XLOC_039814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063512-exon-scaffold_391-1491911889:136410..136545TCONS_00063512-exon-scaffold_391-1491911889:136410..136545Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1510915933:136410..136545TCONS_00063512-exon-scaffold_391-1510915933:136410..136545Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1575043694:136410..136545TCONS_00063512-exon-scaffold_391-1575043694:136410..136545Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1491911889:136817..137038TCONS_00063512-exon-scaffold_391-1491911889:136817..137038Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1510915933:136817..137038TCONS_00063512-exon-scaffold_391-1510915933:136817..137038Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1575043694:136817..137038TCONS_00063512-exon-scaffold_391-1575043694:136817..137038Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1491911889:137332..137462TCONS_00063512-exon-scaffold_391-1491911889:137332..137462Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1510915933:137332..137462TCONS_00063512-exon-scaffold_391-1510915933:137332..137462Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1575043694:137332..137462TCONS_00063512-exon-scaffold_391-1575043694:137332..137462Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1491911889:137748..138279TCONS_00063512-exon-scaffold_391-1491911889:137748..138279Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1510915933:137748..138279TCONS_00063512-exon-scaffold_391-1510915933:137748..138279Clytia hemisphaericaexon
TCONS_00063512-exon-scaffold_391-1575043694:137748..138279TCONS_00063512-exon-scaffold_391-1575043694:137748..138279Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063512-proteinTCONS_00063512-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_391supercontigscaffold_391:136410..138279 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.5357	27.2255	39.3287	42.1069	12.4323	8.05489	9.99874	12.9893	11.745	12.9975	15.493	12.8615	12.5821	13.7909	9.75019	10.357	15.0877	14.086	12.8654	16.0872	13.3913	12.5484	22.8939	21.0872	18.2011	18.5885	12.0419	15.2172	19.3493	19.121
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR008271Ser/Thr_kinase_AS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00063512 vs. Swiss-Prot (Human)
Match: TGFR1 (TGF-beta receptor type-1 OS=Homo sapiens GN=TGFBR1 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 1.903e-74
Identity = 112/202 (55.45%), Postives = 146/202 (72.28%), Query Frame = 1 
Query:    1 QXLVTMVFNIINGLAHLHMEVIGTEGKRAMAHRDIKSKNILVKANRTCCIADLGLTVLHSSVDNKVDIPTNPRTGTTRYQAPELLDNTINLRHFESYRRADMYAFGLCVWEICRRTDICGEVEKYQLPYFDCVEPDPSREQMYEVVCMDAIRPHISEDWQQEDRMKKLIKIMKECWYYEGAARLTSLRVKKDLLPLCRSLDI 606
            + ++ +  +  +GLAHLHME++GT+GK A+AHRD+KSKNILVK N TCCIADLGL V H S  + +DI  N R GT RY APE+LD++IN++HFES++RAD+YA GL  WEI RR  I G  E YQLPY+D V  DPS E+M +VVC   +RP+I   WQ  + ++ + KIM+ECWY  GAARLT+LR+KK L  L +   I
Sbjct:  300 EGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEGI 501
The following BLAST results are available for this feature:
BLAST of TCONS_00063512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TGFR11.903e-7455.45TGF-beta receptor type-1 OS=Homo sapiens GN=TGFBR1... [more]
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