TCONS_00063513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063513
Unique NameTCONS_00063513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063513 ID=TCONS_00063513|Name=TCONS_00063513|organism=Clytia hemisphaerica|type=transcript|length=3084bp
TATTAAACTTATGTATTTAATAACACAATGCtccaaaatatttattcaat
attgtACAAATTTGTATTATTGGAGTATTTTTCCAATATGGATAAATCAG
AGCCCTCAGAAAAGATTGTTGTGCAGCAATCTTTGGAATAATTTGTCAAA
TTCTATCttttaaaatacatttttattgcgttttttaaactttacaaTTG
TAACCACACAAGGGAAATCATACCTAAAATTGTTTAAGTGTGATGAAAGT
AAGATCCACAGTATCCTTATATGGTAAAGACTCTGATAAGTTTGAAGATG
AGTAAAATTAGTAAGACTTTAGGCTGGTTGAAATGGTTGATGGCATAACT
CAAATCAAATATAATAAAAATGGGTAAAAGTGAAAAGAGGAAATTACTCT
AATCCAAAAAATAAAAAAATATGACAAGCTGAAAACAAATGTTTATAAAA
ATATGTTTAATGTCCAAGGTTAATTGTAACACCATGGTAATTGTTTGAAT
ATGAGGTGGAACTTTGTCATACACAGTTGCATTGATGGTTTTAGTCGCTT
TATTATATATTTAAAAATTCATACAAATAACCTGGCAAAAACAATGGTGT
GTGACTTTATTGAAGGCGTTAAAGTGTCAGGTGTTCCAAGTCGTGTAAGA
GCAGATCATGGCGGGGAATTTGTTCATGTCAAATCTTTGATGGAGTCTCT
GAATGGGCCTGACCATAACGCTTTTATATCTGGAAAGTCTGTTCATAATG
TCCGCATTGAACGATTATGGAGAGACGTGTTCTGTAAGGTATCCAATAAA
TTTTACAACATTTTCAATATAATGGAAAAAAACGGCATCCTTGACATTGA
AAACGAAGTTCATATTGCAGCTCTCCATCATGTTTTTGGCTTGAGGATTC
AAAATATTCTTTCAACGTGGCGTGACGCACATAACCACCACCCTGTCAGC
ACTGAGCACTACAAAACACCCAGGCAACTATGGTTTCAAATTAATCAAAT
GGAGTCAAAACGTAACACAGCCATCAGTAATATCTTTCAACGTGATCTGG
GAGAGGTTCTCCAATTACTTGCAAGATTCAAAGGCACACGTGATCTTCCT
GAGCCTGACTCTATCAAAAAAGTGCTTCCAAGAATCATGCTACCTCTAAA
CAGTTTGGAACTTGAAGAGTTGAATAGGACTGTATCTGTAGACTCTGAAA
GTGAGCATGAAGGTGTTGATATTTATGTGAGGGTGTTGGAATTTGTGGCT
AGATGTATTAGGAAATAAATTTCGTTAATTTTTTTTTTGAAATGGATATC
GTATTTTGAACATTTGCTGCAAACGTTGTTGCCCTTTTTTCTCAAAATCA
AGAGAAAGTGAGTTACTTCCTTTTGTCAGAAAGGGGCAGAGTTGTGCCGT
TGATCTAAAAACGATAGTCATATATTGTGTAAAAGTAACCAAAGCCAATA
TCATATCGTATCATACTATATTATATATACATATATCTCTTTATTATAGG
GCTAGTCTAAAAATGTAGAACAAGATTGTTACCCGGGGGGTAATTAGGCA
AAAATGGATGATGGGTATGACTCTCTCAAAAATCGAAAAAGAAAATTCAA
AAAGTCTCTCTAAGGGTCCGCTTTTCAGCAAAAATCGGTCTCTCTAAAGG
TCGGTTTTCGGAGGTCCCGTCCGCACATACCCCTCATTCGCCAACCCTAG
TCCCCCCCCCCCCCCCAGGTCTACACTTCTATGAGCAATTATTGTTGCTC
TTGTCATTGTTGACTCTGGTTTCTTGTAGATTTTCCATTTCTGTGCGTTT
CTTGTTCGATCTGGTTGTGCTGCTGTGATTTGGTGTCCATTGACTGAGAT
GGCTTTATATGGCAATTGATCGAAGGGTGGTTTGGATTCGGTGTTCTGTT
GTTTCAGGAGAACAGTGTCCCCTAACTGGATGCTGTGATGCTTCACATAT
GGCTTGTTGTCTTTATGATGGTGAGATTGCTTCCTCTTCTGCATGATCTC
ATTCTCTTCTCATTCTGCTTCAGTGATGTCTTTTCTGCTGGCTGTGGTAG
ACGTGGTAGAACATCCTCAGTATTTTCAGGTCTGCCTCCGTCTTTGATGT
TTTGGATTTTCTTTGGGTCCGATGTCACACGTTTAGAATGGAATGTTCGA
CCAAACTATTTGATTTTTGTCTGTCTGAACGTCAATTTGGATGGTTTGAG
GATTGTGCCATTCTTTTTAAAATAATCCAGGAATGCCTCGAGGTTTCTAT
AATAATGATCATTCCAGTCTCTTCCATAGACTAGGATGTTGTCATGCAAT
GTAGTAACACCTTGGAGACCAGCAAATGCTTTCTGTATCTGATTGTGGAA
GACGCCGCTTGAGGCTGTAAGTCTAAAATGCAGAGTCTCTCAATTTTTGT
AGACCTTCCTGTGTTTTGAAGATGCTCTTTTCTTTGGATTTCTTATCTAC
CTGGAGTTTATGGTAACCCCAGCCTATGTCAATTTAGCTGAAAATCTTTG
TTTCCTTCAAGTCGTGGCGGATCTCCTGTAGTGTTTGAAATCGTGAAATC
GGGTGCGCTTCATTCCAGCATTGCGTGGTGTATGTCTTTGTTCATCCTGA
TTTGGCCATTACTTTTGTCTTTTATCACAACGTTTATAGCTTTTCCACAC
GTAGTCATAGCGTTCCCGTGTGTCCACATCCGTTATCACTCCCTGTGTTT
TCAGGAATTATTTGGCCTGGGTATGATGTCTGGCTCTTCCAGGGGGTCTC
ATGGCGCTGTTGTAGTGTTCAGGTGTGATGGTGTGCTCACTGCCTGTGGC
CGCGAAGATTGTGTGTTTTGTGCCGCTTATCTTGACGTCGACCCATTTGT
CTGCTGGCGTAGTCATCTTCTTCATGGCATTGGGTGTGGAGTGGTTTTGG
TTTGAGTCATTTTGTTTTAACGTTGTGAAGTGATCTGCGTTGATTCGTTT
GATCGTCTTCTTTCCAGGACAGGTGGCATTCTTTACCATTTCTTAGGCAT
CTCCTTGACTAATGGCTGGAATTGAACCTGTTGCGGGATATTTTGTGTCT
GTTGCTATATTTCCCTGCCTTTTTGAGCTTCCTT
Run BLAST on NCBI

transcript from alignment at scaffold_391:1..3398-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063513 ID=TCONS_00063513|Name=TCONS_00063513|organism=Clytia hemisphaerica|type=transcript|length=3398bp|location=Sequence derived from alignment at scaffold_391:1..3398- (Clytia hemisphaerica)
TATTAAACTTATGTATTTAATAACACAATGCTCCAAAATATTTATTCAAT
ATTGTACAAATTTGTATTATTGGAGTATTTTTCCAATATGGATAAATCAG
AGCCCTCAGAAAAGATTGTTGTGCAGCAATCTTTGGAATAATTTGTCAAA
TTCTATCTTTTAAAATACATTTTTATTGCGTTTTTTAAACTTTACAATTG
TAACCACACAAGGGAAATCATACCTAAAATTGTTTAAGTGTGATGAAAGT
AAGATCCACAGTATCCTTATATGGTAAAGACTCTGATAAGTTTGAAGATG
AGTAAAATTAGTAAGACTTTAGGCTGGTTGAAATGGTTGATGGCATAACT
CAAATCAAATATAATAAAAATGGGTAAAAGTGAAAAGAGGAAATTACTCT
AATCCAAAAAATAAAAAAATATGACAAGCTGAAAACAAATGTTTATAAAA
ATATGTTTAATGTCCAAGGTTAATTGTAACACCATGGTAATTGTTTGAAT
ATGAGGCAAGTGATGTTTGTGACGTAATTTATAAAAAAGTCTATTTGAAG
CTGCCTATTCCATTGATTTATTACATGACTAAATTTATTTTTTTTCACTG
AAATAACTTCCAAAGGCTGTAGATGTCCCCTAAAAATTTCCACTTTGAGA
ACTAAGTTTAGAACTATTCAGAAATCTCATGAAGTAAGGGTTCATAAAGT
TTGTCACCAAGATTTTTAAGCTGTTATCTTTTTTCTCTATCAGGTGGAAC
TTTGTCATACACAGTTGCATTGATGGTTTTAGTCGCTTTATTATATATTT
AAAAATTCATACAAATAACCTGGCAAAAACAATGGTGTGTGACTTTATTG
AAGGCGTTAAAGTGTCAGGTGTTCCAAGTCGTGTAAGAGCAGATCATGGC
GGGGAATTTGTTCATGTCAAATCTTTGATGGAGTCTCTGAATGGGCCTGA
CCATAACGCTTTTATATCTGGAAAGTCTGTTCATAATGTCCGCATTGAAC
GATTATGGAGAGACGTGTTCTGTAAGGTATCCAATAAATTTTACAACATT
TTCAATATAATGGAAAAAAACGGCATCCTTGACATTGAAAACGAAGTTCA
TATTGCAGCTCTCCATCATGTTTTTGGCTTGAGGATTCAAAATATTCTTT
CAACGTGGCGTGACGCACATAACCACCACCCTGTCAGCACTGAGCACTAC
AAAACACCCAGGCAACTATGGTTTCAAATTAATCAAATGGAGTCAAAACG
TAACACAGCCATCAGTAATATCTTTCAACGTGATCTGGGAGAGGTTCTCC
AATTACTTGCAAGATTCAAAGGCACACGTGATCTTCCTGAGCCTGACTCT
ATCAAAAAAGTGCTTCCAAGAATCATGCTACCTCTAAACAGTTTGGAACT
TGAAGAGTTGAATAGGACTGTATCTGTAGACTCTGAAAGTGAGCATGAAG
GTGTTGATATTTATGTGAGGGTGTTGGAATTTGTGGCTAGATGTATTAGG
AAATAAATTTCGTTAATTTTTTTTTTGAAATGGATATCGTATTTTGAACA
TTTGCTGCAAACGTTGTTGCCCTTTTTTCTCAAAATCAAGAGAAAGTGAG
TTACTTCCTTTTGTCAGAAAGGGGCAGAGTTGTGCCGTTGATCTAAAAAC
GATAGTCATATATTGTGTAAAAGTAACCAAAGCCAATATCATATCGTATC
ATACTATATTATATATACATATATCTCTTTATTATAGGGCTAGTCTAAAA
ATGTAGAACAAGATTGTTACCCGGGGGGTAATTAGGCAAAAATGGATGAT
GGGTATGACTCTCTCAAAAATCGAAAAAGAAAATTCAAAAAGTCTCTCTA
AGGGTCCGCTTTTCAGCAAAAATCGGTCTCTCTAAAGGTCGGTTTTCGGA
GGTCCCGTCCGCACATACCCCTCATTCGCCAACCCTAGTCCCCCCCCCCC
CCCCAGGTCTACACTTCTATGAGCAATTATTGTTGCTCTTGTCATTGTTG
ACTCTGGTTTCTTGTAGATTTTCCATTTCTGTGCGTTTCTTGTTCGATCT
GGTTGTGCTGCTGTGATTTGGTGTCCATTGACTGAGATGGCTTTATATGG
CAATTGATCGAAGGGTGGTTTGGATTCGGTGTTCTGTTGTTTCAGGAGAA
CAGTGTCCCCTAACTGGATGCTGTGATGCTTCACATATGGCTTGTTGTCT
TTATGATGGTGAGATTGCTTCCTCTTCTGCATGATCTCATTCTCTTCTCA
TTCTGCTTCAGTGATGTCTTTTCTGCTGGCTGTGGTAGACGTGGTAGAAC
ATCCTCAGTATTTTCAGGTCTGCCTCCGTCTTTGATGTTTTGGATTTTCT
TTGGGTCCGATGTCACACGTTTAGAATGGAATGTTCGACCAAACTATTTG
ATTTTTGTCTGTCTGAACGTCAATTTGGATGGTTTGAGGATTGTGCCATT
CTTTTTAAAATAATCCAGGAATGCCTCGAGGTTTCTATAATAATGATCAT
TCCAGTCTCTTCCATAGACTAGGATGTTGTCATGCAATGTAGTAACACCT
TGGAGACCAGCAAATGCTTTCTGTATCTGATTGTGGAAGACGCCGCTTGA
GGCTGTAAGTCTAAAATGCAGAGTCTCTCAATTTTTGTAGACCTTCCTGT
GTTTTGAAGATGCTCTTTTCTTTGGATTTCTTATCTACCTGGAGTTTATG
GTAACCCCAGCCTATGTCAATTTAGCTGAAAATCTTTGTTTCCTTCAAGT
CGTGGCGGATCTCCTGTAGTGTTTGAAATCGTGAAATCGGGTGCGCTTCA
TTCCAGCATTGCGTGGTGTATGTCTTTGTTCATCCTGATTTGGCCATTAC
TTTTGTCTTTTATCACAACGTTTATAGCTTTTCCACACGTAGTCATAGCG
TTCCCGTGTGTCCACATCCGTTATCACTCCCTGTGTTTTCAGGAATTATT
TGGCCTGGGTATGATGTCTGGCTCTTCCAGGGGGTCTCATGGCGCTGTTG
TAGTGTTCAGGTGTGATGGTGTGCTCACTGCCTGTGGCCGCGAAGATTGT
GTGTTTTGTGCCGCTTATCTTGACTNTAGTGTTCAGGTGTGATGGTGTGC
TCACTGCCTGTGGCCGCGAAGATTGTGTGTTTTGTGCCGCTTATCTTGAC
GTCGACCCATTTGTCTGCTGGCGTAGTCATCTTCTTCATGGCATTGGGTG
TGGAGTGGTTTTGGTTTGAGTCATTTTGTTTTAACGTTGTGAAGTGATCT
GCGTTGATTCGTTTGATCGTCTTCTTTCCAGGACAGGTGGCATTCTTTAC
CATTTCTTAGGCATCTCCTTGACTAATGGCTGGAATTGAACCTGTTGCGG
GATATTTTGTGTCTGTTGCTATATTTCCCTGCCTTTTTGAGCTTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039815XLOC_039815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063513-exon-scaffold_391-1575043694:2894..3398TCONS_00063513-exon-scaffold_391-1575043694:2894..3398Clytia hemisphaericaexon
TCONS_00063513-exon-scaffold_391-1575043694:389..2655TCONS_00063513-exon-scaffold_391-1575043694:389..2655Clytia hemisphaericaexon
TCONS_00063513-exon-scaffold_391-1575043694:1..312TCONS_00063513-exon-scaffold_391-1575043694:1..312Clytia hemisphaericaexon
TCONS_00063513-exon-scaffold_391-1510915933:2894..3398TCONS_00063513-exon-scaffold_391-1510915933:2894..3398Clytia hemisphaericaexon
TCONS_00063513-exon-scaffold_391-1510915933:389..2655TCONS_00063513-exon-scaffold_391-1510915933:389..2655Clytia hemisphaericaexon
TCONS_00063513-exon-scaffold_391-1510915933:1..312TCONS_00063513-exon-scaffold_391-1510915933:1..312Clytia hemisphaericaexon
TCONS_00063513-exon-scaffold_391-1491911889:2894..3398TCONS_00063513-exon-scaffold_391-1491911889:2894..3398Clytia hemisphaericaexon
TCONS_00063513-exon-scaffold_391-1491911889:389..2655TCONS_00063513-exon-scaffold_391-1491911889:389..2655Clytia hemisphaericaexon
TCONS_00063513-exon-scaffold_391-1491911889:1..312TCONS_00063513-exon-scaffold_391-1491911889:1..312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_391supercontigscaffold_391:1..3398 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0283069	0.0304846	1.54301e-05	7.18953e-05	0	0	0.317039	0.0136826	0.002257	7.91254e-07	0.759885	0.869398	1.85648	0.699273	1.30045	1.52363	2.4222	2.47972	2.27073	1.74152	2.52897	4.11336	0.462232	0.567867	0	0	2.05908	0	1.87487	2.7166
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top