TCONS_00063522 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063522
Unique NameTCONS_00063522
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063522 ID=TCONS_00063522|Name=TCONS_00063522|organism=Clytia hemisphaerica|type=transcript|length=684bp
GGTGATTGATTTATCCTCTCTTaagagcaaagaaaaatagtttcgacCTT
TCTATTACTCCAGTCTGGAAAGAAGAGAATATTTACGCAAGAGATTTCTT
GGTGCTTGGCGTAGCCTTTGTGTAAGCCTATGAAATCCAAAGTCTGCGCC
AGAGATATCCGGCGTACATGCCTTACTTTCCAGATTGGCTATTATTTTCA
GCTTAGAAAAGGGTGTCCAAATTTAGGTATAGGTAATTGAGACTGTtcta
aaatcttgagtatcgatttgATTGATCATCGTTTGGTTGGCAATTGATTG
TGACTACTAGTATTAAATCGATCTAGAGTCAAGCGATGAATGAATCAATC
GATTTGCATGGAATAATCGAGCCTCCCTGCCCTTAAAATCCTGATTATTG
ATTGTCTATTGATTATCGAAATCAATCGATATCCAATCCATCAATAGTTG
TTTTAGAGAACGCAACAGCCTATTGAATATAaaaaattactccacataca
ttactttcaaCTCAAAGTAAGTCAGACAGTCAGACAGTCAGAGATGAAGT
TGACAGACTGACAGCCATGACAGATGAGTATGGCGTACGAAATGCACTTT
AAATAGAGTAATACTGTTTCTGACAAAGAAACTAGGTTTTCCAGGGGCAA
AAGGTTGTTTTCGTATCCGATACCCCGATTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_391:6222..6905

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063522 ID=TCONS_00063522|Name=TCONS_00063522|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at scaffold_391:6222..6905 (Clytia hemisphaerica)
CGAAAATCGGGGTATCGGATACGAAAACAACCTTTTGCCCCTGGAAAACC
TAGTTTCTTTGTCAGAAACAGTATTACTCTATTTAAAGTGCATTTCGTAC
GCCATACTCATCTGTCATGGCTGTCAGTCTGTCAACTTCATCTCTGACTG
TCTGACTGTCTGACTTACTTTGAGttgaaagtaatgtatgtggagtaatt
tttTATATTCAATAGGCTGTTGCGTTCTCTAAAACAACTATTGATGGATT
GGATATCGATTGATTTCGATAATCAATAGACAATCAATAATCAGGATTTT
AAGGGCAGGGAGGCTCGATTATTCCATGCAAATCGATTGATTCATTCATC
GCTTGACTCTAGATCGATTTAATACTAGTAGTCACAATCAATTGCCAACC
AAACGATGATCAATcaaatcgatactcaagattttagaACAGTCTCAATT
ACCTATACCTAAATTTGGACACCCTTTTCTAAGCTGAAAATAATAGCCAA
TCTGGAAAGTAAGGCATGTACGCCGGATATCTCTGGCGCAGACTTTGGAT
TTCATAGGCTTACACAAAGGCTACGCCAAGCACCAAGAAATCTCTTGCGT
AAATATTCTCTTCTTTCCAGACTGGAGTAATAGAAAGgtcgaaactattt
ttctttgctcttAAGAGAGGATAAATCAATCACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039818XLOC_039818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063522-exon-scaffold_391-1491911889:6222..6905TCONS_00063522-exon-scaffold_391-1491911889:6222..6905Clytia hemisphaericaexon
TCONS_00063522-exon-scaffold_391-1510915933:6222..6905TCONS_00063522-exon-scaffold_391-1510915933:6222..6905Clytia hemisphaericaexon
TCONS_00063522-exon-scaffold_391-1575043694:6222..6905TCONS_00063522-exon-scaffold_391-1575043694:6222..6905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_391supercontigscaffold_391:6222..6905 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.376784	0.163951	0.371049	0.660982	0.550908	0.527199	0.58268	0.861254	0.314699	0.161556	0.543282	0.592639	0.337417	0.702095	0.321785	0.368699	0	0.289598	0.454506	0.671376	0.74605	0.657373	0.190069	0.233802	0.943421	1.16144	0.388466	0.814714	0	0.2582
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063522 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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