TCONS_00063523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063523
Unique NameTCONS_00063523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063523 ID=TCONS_00063523|Name=TCONS_00063523|organism=Clytia hemisphaerica|type=transcript|length=1785bp
AAAAATCTGAACACAAATTCAAAATTAACaaggtttaaattttttaaaag
actaATGACGAGACaactatttaagcgaattttcATAGCACATTCTTTAT
GTTCGACTATTTTATTATTGCCACTTATTACTGTTAACCTGCTAAAAGCC
CATATAAATAACTATCTTCCCAAAGATAGTGAGAGTATCACTCCTCACCA
TCGACCCTTCTATTTATTTGCAGAGCATCAAGCAGTGTTTTGTGCTTGGT
ACTGAATCTACTTTACAGAGGAGACTAGGTGATATTTGTATTACATAAtg
attttcatgtattttcctTTAGAATAATCTTCAGGAGAAATGAGTACTAA
GCTATCACCGAAAAATATTCTTTATGTATCAAGTGACGAGTATGTGAAAA
TATGTGATTTACACCCTAAAGTAAGGGGACGAGCCAAGCTAGTTGATTGT
CTTATAGAAGTTTATGGGCTGAACGAGAAAATGAAGATAAACTTTCCAGA
AAGAGCTTGCAAAGAAGAACTTGAGTCATTTCATACTTCTGAATATGTAA
CATGCTTGGAATCAATCGAAAGTTACTTCAAGGAAAATGGAAATTTCAAT
TCAAAGAGAGAGGAAAAGATTTGCCTCGATTATTCAGAACTTATGGATGA
AGTTGAGTGTGACATCATTGCTCATGGTTTTGGTTACGATTGTGAAATAT
TTCCAGACATGTTGCAATATGCAAAAATTGTTTCAGGTGCCACATTAACT
GCTGCGAATTCGCTGATGAGGAAAGAGAGCAACATTGCCATCAATTTGGG
AGGTGGTTGGCATCACGCACATGTCGACGAAGCTGCTGGGTTTTGTTATG
TTAATGATATTGTAATTGGAATTTTACATCTATTGAAGTCATTTAAAAGA
ATTCTGTATATTGATTTTGATGTACATCATGGTGATGGCGTTGAAGAAGC
TTTtcagttttccaataaagtttTCACACTTTCTTTACATAAATACGCAC
ATGGATTCTTCCCTGGTACCGGGGATATTGTGGACGTGGGTAAAGGATCA
GGAACTAACTTTACATGTAATATTCCTTTGAAGAATGGAATAAGAGATGA
AAACTATGAGTCTGTGTTCTGCAAGGTCTTTGATGCAGTTATTCGTCATT
TTGACCCTCATTTGATAGTTTCTCAATGTGGAGCTGACATGCTAAATGGT
GACCCACTAGGAGGCTTCAATTTGACTGAGAACTGTCTTCCTCGCTGTTT
TAAAAAGATTCAAGCAATAGGTCTTCCTTTACTTGTCCTTGGCGGGGGAG
GCTATCACTTGCCAAACACTGCGCGTTGCTGGTTGAAACTGATAGCAAGC
TTACTGGATGTGGATGTGGACGATAATATACCTGAACATGAACACCTAGA
AAAATACGGACCAGATTTTTCGTTAGAAATTTCGCCAAGCAATCGTAAGG
ATGAAAACACTATTGAATACCTGAACAGTATGCTTGAAGACGTActggaa
aatctttctttctccTCTGCGGATACAGAAGAAAACAACAAGGAAAACAC
TAACGCCAATGTGGAGGTGATTGACCAAGAAGGTTGTGAATCAGAACCTG
tgtcaaagaaaaacaaaatttgttagCCTGTAcaaacgtcaattttaatt
cTGCTTTCTATCATCGtatcatttttattgtttttaaaatattgtttatc
aaaaatttcatcctTGTACATATATTATTTAAGCATTCTAACAAATAAGA
AGcattaatttttaaagttttgaaatatttaaaac
Run BLAST on NCBI

protein sequence of TCONS_00063523-protein

>TCONS_00063523-protein ID=TCONS_00063523-protein|Name=TCONS_00063523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MSTKLSPKNILYVSSDEYVKICDLHPKVRGRAKLVDCLIEVYGLNEKMKI
NFPERACKEELESFHTSEYVTCLESIESYFKENGNFNSKREEKICLDYSE
LMDEVECDIIAHGFGYDCEIFPDMLQYAKIVSGATLTAANSLMRKESNIA
INLGGGWHHAHVDEAAGFCYVNDIVIGILHLLKSFKRILYIDFDVHHGDG
VEEAFQFSNKVFTLSLHKYAHGFFPGTGDIVDVGKGSGTNFTCNIPLKNG
IRDENYESVFCKVFDAVIRHFDPHLIVSQCGADMLNGDPLGGFNLTENCL
PRCFKKIQAIGLPLLVLGGGGYHLPNTARCWLKLIASLLDVDVDDNIPEH
EHLEKYGPDFSLEISPSNRKDENTIEYLNSMLEDVLENLSFSSADTEENN
KENTNANVEVIDQEGCESEPVSKKNKIC
Run BLAST on NCBI

transcript from alignment at scaffold_391:16322..18106

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063523 ID=TCONS_00063523|Name=TCONS_00063523|organism=Clytia hemisphaerica|type=transcript|length=1785bp|location=Sequence derived from alignment at scaffold_391:16322..18106 (Clytia hemisphaerica)
gttttaaatatttcaaaactttaaaaattaatgCTTCTTATTTGTTAGAA
TGCTTAAATAATATATGTACAaggatgaaatttttgataaacaatatttt
aaaaacaataaaaatgataCGATGATAGAAAGCAgaattaaaattgacgt
ttgTACAGGctaacaaattttgtttttctttgacaCAGGTTCTGATTCAC
AACCTTCTTGGTCAATCACCTCCACATTGGCGTTAGTGTTTTCCTTGTTG
TTTTCTTCTGTATCCGCAGAggagaaagaaagattttccagTACGTCTTC
AAGCATACTGTTCAGGTATTCAATAGTGTTTTCATCCTTACGATTGCTTG
GCGAAATTTCTAACGAAAAATCTGGTCCGTATTTTTCTAGGTGTTCATGT
TCAGGTATATTATCGTCCACATCCACATCCAGTAAGCTTGCTATCAGTTT
CAACCAGCAACGCGCAGTGTTTGGCAAGTGATAGCCTCCCCCGCCAAGGA
CAAGTAAAGGAAGACCTATTGCTTGAATCTTTTTAAAACAGCGAGGAAGA
CAGTTCTCAGTCAAATTGAAGCCTCCTAGTGGGTCACCATTTAGCATGTC
AGCTCCACATTGAGAAACTATCAAATGAGGGTCAAAATGACGAATAACTG
CATCAAAGACCTTGCAGAACACAGACTCATAGTTTTCATCTCTTATTCCA
TTCTTCAAAGGAATATTACATGTAAAGTTAGTTCCTGATCCTTTACCCAC
GTCCACAATATCCCCGGTACCAGGGAAGAATCCATGTGCGTATTTATGTA
AAGAAAGTGTGAaaactttattggaaaactgaAAAGCTTCTTCAACGCCA
TCACCATGATGTACATCAAAATCAATATACAGAATTCTTTTAAATGACTT
CAATAGATGTAAAATTCCAATTACAATATCATTAACATAACAAAACCCAG
CAGCTTCGTCGACATGTGCGTGATGCCAACCACCTCCCAAATTGATGGCA
ATGTTGCTCTCTTTCCTCATCAGCGAATTCGCAGCAGTTAATGTGGCACC
TGAAACAATTTTTGCATATTGCAACATGTCTGGAAATATTTCACAATCGT
AACCAAAACCATGAGCAATGATGTCACACTCAACTTCATCCATAAGTTCT
GAATAATCGAGGCAAATCTTTTCCTCTCTCTTTGAATTGAAATTTCCATT
TTCCTTGAAGTAACTTTCGATTGATTCCAAGCATGTTACATATTCAGAAG
TATGAAATGACTCAAGTTCTTCTTTGCAAGCTCTTTCTGGAAAGTTTATC
TTCATTTTCTCGTTCAGCCCATAAACTTCTATAAGACAATCAACTAGCTT
GGCTCGTCCCCTTACTTTAGGGTGTAAATCACATATTTTCACATACTCGT
CACTTGATACATAAAGAATATTTTTCGGTGATAGCTTAGTACTCATTTCT
CCTGAAGATTATTCTAAaggaaaatacatgaaaatcaTTATGTAATACAA
ATATCACCTAGTCTCCTCTGTAAAGTAGATTCAGTACCAAGCACAAAACA
CTGCTTGATGCTCTGCAAATAAATAGAAGGGTCGATGGTGAGGAGTGATA
CTCTCACTATCTTTGGGAAGATAGTTATTTATATGGGCTTTTAGCAGGTT
AACAGTAATAAGTGGCAATAATAAAATAGTCGAACATAAAGAATGTGCTA
TgaaaattcgcttaaatagttGTCTCGTCATtagtcttttaaaaaattta
aaccttGTTAATTTTGAATTTGTGTTCAGATTTTT

Coding sequence (CDS) from alignment at scaffold_391:16322..18106

>TCONS_00063523 ID=TCONS_00063523|Name=TCONS_00063523|organism=Clytia hemisphaerica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_391:16322..18106 (Clytia hemisphaerica)
ctaacaaattttgtttttctttgacaCAGGTTCTGATTCACAACCTTCTT
GGTCAATCACCTCCACATTGGCGTTAGTGTTTTCCTTGTTGTTTTCTTCT
GTATCCGCAGAggagaaagaaagattttccagTACGTCTTCAAGCATACT
GTTCAGGTATTCAATAGTGTTTTCATCCTTACGATTGCTTGGCGAAATTT
CTAACGAAAAATCTGGTCCGTATTTTTCTAGGTGTTCATGTTCAGGTATA
TTATCGTCCACATCCACATCCAGTAAGCTTGCTATCAGTTTCAACCAGCA
ACGCGCAGTGTTTGGCAAGTGATAGCCTCCCCCGCCAAGGACAAGTAAAG
GAAGACCTATTGCTTGAATCTTTTTAAAACAGCGAGGAAGACAGTTCTCA
GTCAAATTGAAGCCTCCTAGTGGGTCACCATTTAGCATGTCAGCTCCACA
TTGAGAAACTATCAAATGAGGGTCAAAATGACGAATAACTGCATCAAAGA
CCTTGCAGAACACAGACTCATAGTTTTCATCTCTTATTCCATTCTTCAAA
GGAATATTACATGTAAAGTTAGTTCCTGATCCTTTACCCACGTCCACAAT
ATCCCCGGTACCAGGGAAGAATCCATGTGCGTATTTATGTAAAGAAAGTG
TGAaaactttattggaaaactgaAAAGCTTCTTCAACGCCATCACCATGA
TGTACATCAAAATCAATATACAGAATTCTTTTAAATGACTTCAATAGATG
TAAAATTCCAATTACAATATCATTAACATAACAAAACCCAGCAGCTTCGT
CGACATGTGCGTGATGCCAACCACCTCCCAAATTGATGGCAATGTTGCTC
TCTTTCCTCATCAGCGAATTCGCAGCAGTTAATGTGGCACCTGAAACAAT
TTTTGCATATTGCAACATGTCTGGAAATATTTCACAATCGTAACCAAAAC
CATGAGCAATGATGTCACACTCAACTTCATCCATAAGTTCTGAATAATCG
AGGCAAATCTTTTCCTCTCTCTTTGAATTGAAATTTCCATTTTCCTTGAA
GTAACTTTCGATTGATTCCAAGCATGTTACATATTCAGAAGTATGAAATG
ACTCAAGTTCTTCTTTGCAAGCTCTTTCTGGAAAGTTTATCTTCATTTTC
TCGTTCAGCCCATAAACTTCTATAAGACAATCAACTAGCTTGGCTCGTCC
CCTTACTTTAGGGTGTAAATCACATATTTTCACATACTCGTCACTTGATA
CATAAAGAATATTTTTCGGTGATAGCTTAGTACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039819XLOC_039819Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063523-proteinTCONS_00063523-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063523-exon-scaffold_391-1491911889:16322..18106TCONS_00063523-exon-scaffold_391-1491911889:16322..18106Clytia hemisphaericaexon
TCONS_00063523-exon-scaffold_391-1510915933:16322..18106TCONS_00063523-exon-scaffold_391-1510915933:16322..18106Clytia hemisphaericaexon
TCONS_00063523-exon-scaffold_391-1575043694:16322..18106TCONS_00063523-exon-scaffold_391-1575043694:16322..18106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_391supercontigscaffold_391:16322..18106 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.61481	4.50016	4.02717	3.46616	6.64833	5.85333	5.99095	6.15055	4.53378	3.92403	4.99472	2.48873	2.93442	3.12516	3.43853	3.7175	4.47827	4.45151	1.93833	2.45402	2.96006	2.61161	6.99477	6.195	7.95171	7.61441	3.02501	2.4048	5.39692	5.80409
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000286His_deacetylse
IPR023801His_deacetylse_dom
IPR003084His_deacetylse_1
Vocabulary: Molecular Function
TermDefinition
GO:0004407histone deacetylase activity
Vocabulary: Biological Process
TermDefinition
GO:0016575histone deacetylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016575 histone deacetylation
molecular_function GO:0004407 histone deacetylase activity
Blast
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BLAST of TCONS_00063523 vs. Swiss-Prot (Human)
Match: HDAC8 (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2)

HSP 1 Score: 313.538 bits (802), Expect = 2.592e-100
Identity = 166/379 (43.80%), Postives = 229/379 (60.42%), Query Frame = 1 
Query:  370 LYVSSDEYVKICDLHPKVRGRAKLVDCLIEVYGLNEKMKINFPERACKEELESFHTSEYVTCLESIESYFKENGNFNSKREEKICLDYSELMDEVECDIIAHGFGYDCEIFPDMLQYAKIVSGATLTAANSLMRKESNIAINLGGGWHHAHVDEAAGFCYVNDIVIGILHLLKSFKRILYIDFDVHHGDGVEEAFQFSNKVFTLSLHKYAHGFFPGTGDIVDVGKGSGTNFTCNIPLKNGIRDENYESVFCKVFDAVIRHFDPHLIVSQCGADMLNGDPLGGFNLTENCLPRCFKKIQAIXXXXXXXXXXXXXXPNTARCWLKLIASLLDVDVDDNIPEHEHLEKYGPDFSLEISPSNRKDENTIEYLNSMLEDVLENL 1506
            +Y+ S EYV +CD   K+  RA +V  LIE Y L+++M+I  P+ A  EE+ +FHT  Y+  L+ +                      S+  D+   D I +G GYDC     +  YA  + GAT+TAA  L+     +AIN  GGWHHA  DEA+GFCY+ND V+GIL L + F+RILY+D D+HHGDGVE+AF F++KV T+SLHK++ GFFPGTGD+ DVG G G  ++ N+P+++GI+DE Y  +   V   V + F+P  +V Q GAD + GDP+  FN+T   + +C K I    L  L+LGGGGY+L NTARCW  L   +L   +   IP+HE    YGPD+ LEI+PS R D N    +  +L  +  NL
Sbjct:   17 VYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKV----------------------SQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNL 373
The following BLAST results are available for this feature:
BLAST of TCONS_00063523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HDAC82.592e-10043.80Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=... [more]
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