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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063525 ID=TCONS_00063525|Name=TCONS_00063525|organism=Clytia hemisphaerica|type=transcript|length=2237bp
CACGACACCCAATGCCCCATTCACAGCAATTGAATCCTTCCTTTACTTTT
AACTTATTAGAGAACTACGAAGTTTGATTAAAAACCCTACTCTTCAATAT
TAACcaataaaacaacaaaatgaacactttgtttttcaaattttatcaaa
tgtcATAAGTTAGTagctttttaaagaaaataattaaatgttttcacttt
ttactAGACGTGCTTCGCAAACCCCAGGTGGAACCCCCTACAGAGTAAGA
TTTCGTCCCCCGTGGAAAATTAGTCACCAGGCTGTCGCTCATGGTTTTTT
TTAAAAGTATCAACAATTAAAGAATGCAGGATATTCTTCTCGCTTATTCC
AAAATTAAAGCGAACAATTTAAAAAGAATGAGCTTATGTTGGATGAATTT
GGAAAACATTTGAGGTCTTATAAGCATAATGGAGCGCAACAAACAACGTC
ACATAGTATTTAAAGGCGCGACGAAAAGATTTTACAACCGATGATGAAAA
GTTCACGGTCTAGGTCATTTGGATTCTGTAGAGATGGCAAGATGGTGGCA
TTGTTACTATTATTAGCGTAAAAATCCTTGCATTTTTGGCCAACAGGCGA
TCATAACTTACAAAACACTTGAAAATGATATATTTTGCTCTCAGGGGTTT
CGAATTCATTAAAAATTGATGGCAGTAGTTGGACCTGATTACGCGGGATT
AAGCCTTCATgtggaaaaatatcaaaatcgaTAGAATAACgtataaattt
tacaaaaaatattaaaatacataaaaaattgaccgaaaaagagaaatttt
agtttgatttaaacaaataaatgaaattatttgatctagttcatcaaaaa
tttaccAAGTACTTAAGCAATTTTGATATCGATTTCATTTTCTATTGGGA
TGATAGGACTGTTTGAGGATCAAAATAATCTGACCCAAAGCAACCGAAAG
AAATTGAGGAGAAGAGGATTTCTTCACGACTGAAGAAAATCTTGTGATGT
TGGATTACTTGAGGGTCAGCTCAGATCGCTTTAAGATTAATATGTTCCAT
TACAATCAACCAATTCAAATGATAGAATTTTTTGAGGCGATTGGGGTTAA
TGATGTACTAAAAGTTTCGAATAAATTTTTGCTATGGACCACGTGGTAAT
ATCCGCTCTTCAAATATTGGGagtagaatatttttttcaaaagggtTCAA
AATTCAAGACATCCAAAAGATGTACAAATACTgaagatattataaaaaaa
attggaaaaaaataaatcctTGCATCTCAATAGTGgaattaaaatcattt
tcaccgTAAATCTGGTGCGAGTGTAATCGGTTCTatgtttttatgagata
gaatATCACTGTCTGCTCTCATGAATTATGTctctgaaaatatattttca
ctgTACGAGGTCTGTTCAAGATTAAAAAAATACGCAACCGCAACATATAA
GATGTTTATAAGGCGTTTTTACACAACCATTGCATTTACTGCGAAAAATG
tgtttgttgaatatttttctTGAAGGACGACTCGACCAAAAAAACATCTG
CTCAACAAATTTGCCTTTTACTCTGGGTAGATATTATACTTTGACAATAA
ATGTGTCTCTTGTCCACGTTCACTTAATCATATATGGAAAATGAGAGTCA
TTCAAAACTTCCCTGGCACTGACACGTGTACATCCAACATTTTGCAAATA
CCGTGCAAAGGGTTTCGTAAAGTTGATGCCAAAAATATACAACTGAACGA
AATTTTAACTCAATAGAGAGAGAGTGACAACGGGGTGAaatttttatgaa
tattttaAGTTGACCTTGTTTGAAAATTGACAACTCATTAATCAATAAGC
CAATCAAGTGTAAAACGTCCCTCAGTTGAAACTTTCACTGTCATTCCGTT
CAAAAACAACTTTGCAAAGTACGTCAGTCAAGTCAGTATCTTTTAACACC
TGTGCCTTCTCTCATGCGATAACTTTCTACCGATAGATAAACGCACATCA
CAATCAATTGATACAATAACCATTCTCGAAAGTAGTTTGAACGTGAAAAT
CTTTCCATCCTTGACAACTTGTCTTATTGAGCAGAACATTGAAATTAGAG
TGTTATAAGAGGCTGAACAACATTTTAAGGTACAAACGGATAAGCATAAA
TAAGTCGACAAGATTACACGAGAATGTCATGAGCAGATCAACTTTATTAC
TTTCTTCGGATTAAAGGCATAAAATTTTATATGTGAG Run BLAST on NCBI transcript from alignment at scaffold_391:96828..99064 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063525 ID=TCONS_00063525|Name=TCONS_00063525|organism=Clytia hemisphaerica|type=transcript|length=2237bp|location=Sequence derived from alignment at scaffold_391:96828..99064 (Clytia hemisphaerica)
CTCACATATAAAATTTTATGCCTTTAATCCGAAGAAAGTAATAAAGTTGA
TCTGCTCATGACATTCTCGTGTAATCTTGTCGACTTATTTATGCTTATCC
GTTTGTACCTTAAAATGTTGTTCAGCCTCTTATAACACTCTAATTTCAAT
GTTCTGCTCAATAAGACAAGTTGTCAAGGATGGAAAGATTTTCACGTTCA
AACTACTTTCGAGAATGGTTATTGTATCAATTGATTGTGATGTGCGTTTA
TCTATCGGTAGAAAGTTATCGCATGAGAGAAGGCACAGGTGTTAAAAGAT
ACTGACTTGACTGACGTACTTTGCAAAGTTGTTTTTGAACGGAATGACAG
TGAAAGTTTCAACTGAGGGACGTTTTACACTTGATTGGCTTATTGATTAA
TGAGTTGTCAATTTTCAAACAAGGTCAACTtaaaatattcataaaaattT
CACCCCGTTGTCACTCTCTCTCTATTGAGTTAAAATTTCGTTCAGTTGTA
TATTTTTGGCATCAACTTTACGAAACCCTTTGCACGGTATTTGCAAAATG
TTGGATGTACACGTGTCAGTGCCAGGGAAGTTTTGAATGACTCTCATTTT
CCATATATGATTAAGTGAACGTGGACAAGAGACACATTTATTGTCAAAGT
ATAATATCTACCCAGAGTAAAAGGCAAATTTGTTGAGCAGATGTTTTTTT
GGTCGAGTCGTCCTTCAagaaaaatattcaacaaacaCATTTTTCGCAGT
AAATGCAATGGTTGTGTAAAAACGCCTTATAAACATCTTATATGTTGCGG
TTGCGTATTTTTTTAATCTTGAACAGACCTCGTAcagtgaaaatatattt
tcagagACATAATTCATGAGAGCAGACAGTGATattctatctcataaaaa
catAGAACCGATTACACTCGCACCAGATTTAcggtgaaaatgattttaat
tcCACTATTGAGATGCAaggatttatttttttccaattttttttataata
tcttcAGTATTTGTACATCTTTTGGATGTCTTGAATTTTGAacccttttg
aaaaaaatattctactCCCAATATTTGAAGAGCGGATATTACCACGTGGT
CCATAGCAAAAATTTATTCGAAACTTTTAGTACATCATTAACCCCAATCG
CCTCAAAAAATTCTATCATTTGAATTGGTTGATTGTAATGGAACATATTA
ATCTTAAAGCGATCTGAGCTGACCCTCAAGTAATCCAACATCACAAGATT
TTCTTCAGTCGTGAAGAAATCCTCTTCTCCTCAATTTCTTTCGGTTGCTT
TGGGTCAGATTATTTTGATCCTCAAACAGTCCTATCATCCCAATAGAAAA
TGAAATCGATATCAAAATTGCTTAAGTACTTggtaaatttttgatgaact
agatcaaataatttcatttatttgtttaaatcaaactaaaatttctcttt
ttcggtcaattttttatgtattttaatattttttgtaaaatttatacGTT
ATTCTAtcgattttgatatttttccacATGAAGGCTTAATCCCGCGTAAT
CAGGTCCAACTACTGCCATCAATTTTTAATGAATTCGAAACCCCTGAGAG
CAAAATATATCATTTTCAAGTGTTTTGTAAGTTATGATCGCCTGTTGGCC
AAAAATGCAAGGATTTTTACGCTAATAATAGTAACAATGCCACCATCTTG
CCATCTCTACAGAATCCAAATGACCTAGACCGTGAACTTTTCATCATCGG
TTGTAAAATCTTTTCGTCGCGCCTTTAAATACTATGTGACGTTGTTTGTT
GCGCTCCATTATGCTTATAAGACCTCAAATGTTTTCCAAATTCATCCAAC
ATAAGCTCATTCTTTTTAAATTGTTCGCTTTAATTTTGGAATAAGCGAGA
AGAATATCCTGCATTCTTTAATTGTTGATACTTTTAAAAAAAACCATGAG
CGACAGCCTGGTGACTAATTTTCCACGGGGGACGAAATCTTACTCTGTAG
GGGGTTCCACCTGGGGTTTGCGAAGCACGTCTagtaaaaagtgaaaacat
ttaattattttctttaaaaagctACTAACTTATgacatttgataaaattt
gaaaaacaaagtgttcattttgttgttttattgGTTAATATTGAAGAGTA
GGGTTTTTAATCAAACTTCGTAGTTCTCTAATAAGTTAAAAGTAAAGGAA
GGATTCAATTGCTGTGAATGGGGCATTGGGTGTCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063525-exon-scaffold_391-1491911889:96828..99064 | TCONS_00063525-exon-scaffold_391-1491911889:96828..99064 | Clytia hemisphaerica | exon |
| TCONS_00063525-exon-scaffold_391-1510915933:96828..99064 | TCONS_00063525-exon-scaffold_391-1510915933:96828..99064 | Clytia hemisphaerica | exon |
| TCONS_00063525-exon-scaffold_391-1575043694:96828..99064 | TCONS_00063525-exon-scaffold_391-1575043694:96828..99064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_391 | supercontig | scaffold_391:96828..99064 . |
Blast
The following BLAST results are available for this feature:
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