|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063533 ID=TCONS_00063533|Name=TCONS_00063533|organism=Clytia hemisphaerica|type=transcript|length=305bp
GATGTCAGATTTTGCTCGATTGGCTCGTGTGTTGACTGGAACGGCAGTTG
GCCTTGTCTTGGGTGGCGGAGGTGCCAGaGGTATTTCACATGTTGGTATC
ATCAAAAGAATGTTAGAAGCAGGAATACCGATTGACCGTGTGGGAGGTAC
GAGCATGGGTGCCTTTATTGGTGCTATTTATGCAGAGCATGGATCTATTG
TGAGAACCACTCAACGTGCCAGAGAGGGCTGTTTGAAAATGGCATCAATG
TGGAGGAAACTGCTCGATATGACTTACCCTTACACCTCGCTTTTTACCGG
TAAGT Run BLAST on NCBI transcript from alignment at scaffold_392:81993..88351- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063533 ID=TCONS_00063533|Name=TCONS_00063533|organism=Clytia hemisphaerica|type=transcript|length=6359bp|location=Sequence derived from alignment at scaffold_392:81993..88351- (Clytia hemisphaerica)
GATGTCAGATTTTGCTCGATTGGCTCGTGTGTTGACTGGAACGGCAGTTG
GCCTTGTCTTGGGTGGCGGAGGTGCCAGGTAGAGTNGTCTACCCTTCGAA
CCTACTTTAGAGCACTTACAAATCGATTGTGGTTTTGTGCCAAGTATTTT
GTCCCTGATTGTACCTTTAGGGGTTTGAGACATTAAGAAAAAATGAGATG
TATCGAAAAGTTACTTTGTATTCCGTTTTAGGTTCGATGCCCAAGAAGAG
TCTTCAAAAGAAAACTATTGTCAGCCCGTGTAAGTGATCCATTATTCGAT
TGAAAATCATAACTCGAATGTTCTTTGAGCTTTCTTTTGTTTGAGTGATT
TCTTATTTTCTTCATCTTTACTATATTTTAGTACCATGACGACCCAAACT
ATGAGGGACCAGATAGGTATAATTTTTATCGCACTTAGATTTAAAGAAAG
ATGATCTTTGAAGTTTTTTCTTCGTTTCTAGTTTTCTAAGTTTATAATTA
ATTCCCAATCGACTTTAGCAAAGATCTGCTACGTTGTAACAAAAATCTTG
TCGATTATTCAAATTTTGTGTATTTGACCAAATTAAAATGATTGAGCCAC
TCACTTACTTGTGATACTTCTCATTTGATCGCAGGATGTCAGATTTTGCT
CGATTGGCTCGTGTGTTGACTGGAACGGCAGTTGGCCTTGTCTTGGGTGG
CGGAGGTGCCAGGTAGAGTTGAACCTTGTAATCAACTGATTTCTTTCAAA
AAAGCCAAAAAAAGCTGAGGGTTAAACCTCAAACCTTCAACGTATGCCTA
CTATATACTTAAATGAATTTGAATTTTTCAGAAAACTTAGAAATAGTTAA
TGCATTTTTTCGAGAATACTTCTGACACTCCGTTCAAATTCAAAAAACTC
CCTAATCGTCCCAATATAAACTTCATAAAAACTTTCCAGCATAACATCCG
AGGGTAGTATTTTTGTCAACAAAATATGTACGTTGCAATACCTGTTTATT
TGACAAAGAACCCCTGTTTTGCCTAAACTTGTTACCCCTTCGTATATTAC
CCCTTCCATAATATAGGCGGGAGTGCTAACTTCATCGGAAAGTTTGAAAC
TTATTTAAAGTTGAGCAGATTTCTCTACAGCTTGCTCTTTAGGAAATACC
CACTGCCATTTTGAAATAATAACTGTCCGCTTCATTTTCTTTTGTTACAG
AGGTATTTCACATGTTGGTATCATCAAAAGAATGTTAGAAGCAGGTCAGT
ACCTACGTTATCTCTTCCTTTGCAAAGGCTACCTTTGGTAACCTTTCACC
TAAAATTTTTGAATATTTTCTGTCAGTCCGTAGCGCCGGACGCTATTTAC
AGAAAAAAAAGATTCCCAATACATTAATTGGTTTCCTTTCTGAATATCGG
GGAAATGTAGCGTGATTTTTTGTTTTATTTAACTAATTTTCATGGTGTCG
GCTTTTGAAACTAAATAAACCAGCTGCGCTGGAAGGTCGCCTAAATGGAA
TAGCTTTTTAAAGAGCTTAAAAGTTTGAAAAAAGTATACGACAAAAAGCT
TAACAGTGTAACACGTGATTTGCGAATGTGAAAAATCTCGCATTAATGTC
AAAATGACTGAAGTTGATTTTAAGTTAATGTTAGAAAAGATAAAATGAGA
TTGGAATCAACCTGAAAAATATTCTTCAGAAACAAATACGTAATATAATA
TTATTTTTGTCATCCCTAAAATCTTAAAAGTTTTCAGAAAGTTATCATTT
TTTAAAAGTGACATTAGGGATATAGGTGAAAATAGCCTAAATTTTTTCTG
AAGAGATAAAAAAACCGTTCGAGTTAAGGACACATTCAAGTTATAGGGTT
TGAGTTTGAAGACGGTTACTTAATCATATCATGTTTAACTTATATCAATG
AATGTTTCTTGTTTGTACAATAAAAAATTGTTGCTAGAAAGTTTTAATAA
ATTATTATAGTAAATCTAATAATACAGTTGAAGTAATCTTTTAACAAAAG
TAAAAAATTTGGAGGGGATTTAATATGGCTGCGAGCTTGAAAAATTAAAT
TTGACGGGAATTTATTTGCCTTAAAATAGATAACATTTGGGGGGAGAAAA
CAATAATCTAAATTTGGCGTCGAATGGCAGTAAAAGTTACATTTGGATGA
TTTTGGCCCAATCCACCAAATTAAATTCCCGCTAAATTTAATTTTCAAGT
TAACCACCAAATTAAAAGGACCCTCCAGGCACACTGGAAACTTCCGGAGT
TTTACAGACCAGCTAAAAAAACACTATTTTTATCTCTGGAAAGCTTAGGA
GCTCTTCCCGGCTGGAGCAAAGTGATTCTTAACACAGCTCCAGAGTTCCG
GTGTAGATCAATTGCCGAAATACGAGAAAAACGGCACTTTTTGCTCCGGA
CGTTTCTGGAGCGTCGGGAGGGTCCTAAATTAAATTCCCTTTGAAAAAAC
TTTTTCGGCCATCCGCCAAATTAAATTCCCACCAAAATTTCTCCTTTTAA
TGTAGGTGCAATGTCACATTGTGTAATTAAAACTCCAGCAAATATCTTGA
TAACTCCATGTTTCAATGGATGCAAGGAGAACAACAATAATAATCAAAAG
GGCCATTCCAGAGAAAGGATACGTAACGTCACTCTCATTTTTACTAGATG
CCAGTGGGGAGACAGTTGTTCAGCCGGGCATAAACTCCAATAATTGCAGT
TGACAACTGGACAATATCTTGAAATGGCCCAAAAAGGAGCCTGAAATAAA
AGAAATAAACTGGCTGCCAAACAGCCGACAGTTGTATGTTTGTTCAAGAA
ATTTTAAGTCAATACTTGCAATGGTTACACAAAATTACTCGTCTTGGAAC
GGTGAATCATCAATCAAATCTTGCTTAAGCGTTTAGGTGATATATAAATG
TTCTTTTGCTTCACTTCAAATCTGCTAATTGTAGCTAAGAAATTCATGGT
ATGCAATTGATACATTGGTTAGGTTGCCATATGCAGTGAGTGATCTTGGT
TGGGACATGCTATCAACTGTTATCATAGATTTCGAGTAATTGAAACAATA
ATAAACTTATTCTTATCTAATCTATCTTATTTTTCTTGTCAACACAAACA
CATCCATCTTCCAAAACCAAATGTTTAAACCTCAAAAGTGATTCTAGTGA
AAGGAGGTTTGTTTTCAACAACATCACGAGTGTGGTAGTTTGAATGGAAT
AATATCAATGAAGAACTATAAATTTCAATTTCAATTTTGAAGAATCATTA
TTGTAGTTGTAGATTTAAAATCTACATCAAGAATTATCTGCTGCTTGCAC
TTGTAGTAGAAACTTTCGACAACTTTCACGAGGCTTTTAATTATCTCCGT
TATTTAGATTTCATAAAACAAGTGTGCTAACTACTACGGAGCTAATTAGA
ATCTACACACTGCAAATACTGTCTGATAAGTTTGCGTGGCGCAATATAAC
AGAGATAAAACGGCTTATGCAAGAATTTACGCGGGAAATAATTTCCCGAT
TTACCGAACATTTACCGAATCGGGCGACCAAACTTTCACAAAAGAGTCGT
ATGGAGAAAACACCGAATTTAAAGGTCTCCTTCACTTGCGTGAGGCGACC
AAAAAATGTAAAGGGAAATCTGTATTTACACTTGTCTATCAAAGGTAACG
AATTGCTCAATCGATTAATAATCAATTTTATCGGCGATCCAAAAAATATC
AGTAATCTGATTGGTTAAAAAGAGTACAATATATCTTGTATTTTACATGT
AAAAATATAAATTGACGAAAAGATGTTGTTGCATTGTAGCGGTAGCAGCA
ATCTAACGTCACTTTTCTACAAGAGTGCCCAGCGCTTTTTTCCAACAAGA
AATTATATTATATTATATTATATTATATTAGAGTTGTCATGCAGCAAAGG
AAGGAATGAGCAAATGAAAGTGGATGCTTAAAGGGCATCATCTCCTAACA
TTGCTTACACAGCAACTTTTGTTCTCTTTTTTCCGCGCCCATGCGAGTGC
AAAAAAAAATTAGAAATTCTACTGTTAATTCCGCCGTGTCACCATTAAGG
CACGTTCTTTCTATATCACCAAAAGAAATATCTATTAAAGGTCCTCTTTT
ACTCTAAAAGCTTTAAATGTTTTTGTGGATGAGTACTTAATGTATTAATT
AATCCCATCTCTGAATCCCAGTCAAGAAACTTTAAAGGTTTCATTATTTG
ATTAAGTGGCCAGGGGATAGCTTAAGATATGAAATGCATTTAAAAGTTTT
TTCAGTTACTTGATTTTGATTTAGCCCGCCCTTTTTGGCTAGCTTCTCTG
TTATGGGCTATTGTACAATTTTTGGACCTACCTAAGGTAGTCCTTTAAAT
TAACCCTTGTCCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
CTGTTACCAGCTTTTCTCGGGATCAGCTCATTAGTTTTTTCTAATTTTTT
GCACAATGATGCAAAATGGCAATGCCCAAAATGTGACGGAGCCCGATTTT
CGAAAAAAAAAATTTTTCCGGCCGAAAATTGCGGAAATATGCCGAAAAAA
CTGATTTTTCGGCATTTTCTCGAGATTTCATCATTAGTTTTTTCAGATTT
TTTGCTCAAAGATGCGTATTAACAATGCCCAAAACATGGCCTAGTCCGAT
TCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAGAAAAAATTTTTTCCGGCCGAAAATG
CCGGAAATCGCCGTTTTTCTGGATTTTCATTGGACTTTTTCCATATAATT
GGTTGTTTTTCATTCAAAAACATTATCAATAGCAATGCCCACCATCAAGC
ATGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTTTCTAAAA
ATCGCTGGAACAGCCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTCGCCGGAAAAACTGTATTTCTTGAATTTCTTGAGCTG
TACTTTATATTTTTTCATGAAATTTTGCACACTGATGCAAAATGTCAATA
CCTAAATTGTGATCGAGCCCGATTTTCGAAAATAATTCAATTTCGGCTGA
AAATGCCTGAAATATGCCGGAAAAACTGGTTATTTGGCATTTTCTCGAGA
TTTTATCATTAGTTTTTGCTGATTTTTTGCTCAAAGATGCGTATTTGCAA
TGCTCAAAACATGGCCGAGTTCGATTTTTGAGAAATTGCAGATTTTCATT
GGATTTTTTCCTTGTATTTCTATGTTTTTCACACAAAAACATTATTGATA
ACAATGCTCACCATCAAGCATGATTTAATTGTCAATAAAACTGATTTTTG
CAACCACAACTTCCTATTTATCATTTCCCTACAACCCTTCCCTCTCCCCC
CATCAACAATCAATGATGAATTTATTGCGTTGTGTATTTTCGCTAAACGC
TATATTTTCTGACTGATTTTTTTCATTTTTCTTTTCGCATTGCTTTCTAA
CTTTCATCATCAGGTAGGTCCATTCAGCGTGTTGCTTGTTAATCCTTCAA
TTGAAAATCCTTCAACTATTAAACCCTTTCAACATCGTAACTGACTTCCC
ATTCTCGGTTAGGTTTACTTTTATTTCGATTGCGCTTAAAAATCTCAACT
GAATTTTTTAATGATAATTGGTCTTTCTACTTTGTGTTTAAGGTCCCACT
ATGATTGGCAGTAGAACGACAACAAGTTGTTATTTTTTAATAAAGTTTGA
ATTAGAATCCGATTTTTTGAGTAGAGTCACAATCAAAAAGAAAAATTGAA
AAAAATGGGAAGATCAATTACTTTCAACATTGTGCTATAATTTCCTTTTT
CTCTGTTCACGTTCAGGANAGATCAATTACTTTCAAGATTGTGCTATAAT
TTCCTTTTTCTCTGTTCACGTTCAGGAATACCGATTGACCGTGTGGGAGG
TACGAGCATGGGTGCCTTTATTGGTGCTATTTATGCAGAGCATGGATCTA
TTGTGAGAACCACTCAACGTGCCAGAGAGGGCTGTTTGGTAAGCTTTTTT
TATACCGTTACTTTTAACCACCTGGGAAGCTAGCTTTCTCTTTCTTCTGA
TGTCACCTTTTTTTTTATCATTTTGCATTGTGTTTTCAGAAAATGGCATC
AATGTGGAGGAAACTGCTCGATATGACTTACCCTTACACCTCGCTTTTTA
CCGGTAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063533-exon-scaffold_392-1575043694:88274..88351 | TCONS_00063533-exon-scaffold_392-1575043694:88274..88351 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1575043694:87108..87151 | TCONS_00063533-exon-scaffold_392-1575043694:87108..87151 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1575043694:82164..82276 | TCONS_00063533-exon-scaffold_392-1575043694:82164..82276 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1575043694:81993..82062 | TCONS_00063533-exon-scaffold_392-1575043694:81993..82062 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1510915933:88274..88351 | TCONS_00063533-exon-scaffold_392-1510915933:88274..88351 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1510915933:87108..87151 | TCONS_00063533-exon-scaffold_392-1510915933:87108..87151 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1510915933:82164..82276 | TCONS_00063533-exon-scaffold_392-1510915933:82164..82276 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1510915933:81993..82062 | TCONS_00063533-exon-scaffold_392-1510915933:81993..82062 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1491911889:88274..88351 | TCONS_00063533-exon-scaffold_392-1491911889:88274..88351 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1491911889:87108..87151 | TCONS_00063533-exon-scaffold_392-1491911889:87108..87151 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1491911889:82164..82276 | TCONS_00063533-exon-scaffold_392-1491911889:82164..82276 | Clytia hemisphaerica | exon |
| TCONS_00063533-exon-scaffold_392-1491911889:81993..82062 | TCONS_00063533-exon-scaffold_392-1491911889:81993..82062 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_392 | supercontig | scaffold_392:81993..88351 - |
Blast
BLAST of TCONS_00063533 vs. Swiss-Prot (Human)
Match: PLPL6 (Neuropathy target esterase OS=Homo sapiens GN=PNPLA6 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 3.618e-24 Identity = 63/99 (63.64%), Postives = 78/99 (78.79%), Query Frame = 2
Query: 5 SDFARLAXXXXXXXXXXXXXXXXXXXISHVGIIKRMLEAGIPIDRVGGTSMGAFIGAIYAEHGSIVRTTQRAREGCLKMASMWRKLLDMTYPYTSLFTG 301
SDF+RLARVLTG + LVLGGGGARG SH+G++K + EAG+P+D VGGTS+G+FIGA+YAE S RT QRARE M S+ +LD+TYP TS+FTG
Sbjct: 956 SDFSRLARVLTGNTIALVLGGGGARGCSHIGVLKALEEAGVPVDLVGGTSIGSFIGALYAEERSASRTKQRAREWAKSMTSVLEPVLDLTYPVTSMFTG 1054
The following BLAST results are available for this feature:
|
