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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063535 ID=TCONS_00063535|Name=TCONS_00063535|organism=Clytia hemisphaerica|type=transcript|length=2629bpRun BLAST on NCBI protein sequence of TCONS_00063535-protein >TCONS_00063535-protein ID=TCONS_00063535-protein|Name=TCONS_00063535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=742bp MLKDPPASLLEADFAEVSGSDSMLPAEVMFMLRSVRVFGHFEKPLFFELCRun BLAST on NCBI transcript from alignment at scaffold_392:91070..114573- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063535 ID=TCONS_00063535|Name=TCONS_00063535|organism=Clytia hemisphaerica|type=transcript|length=23504bp|location=Sequence derived from alignment at scaffold_392:91070..114573- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_392:91070..114573- >TCONS_00063535 ID=TCONS_00063535|Name=TCONS_00063535|organism=Clytia hemisphaerica|type=CDS|length=44580bp|location=Sequence derived from alignment at scaffold_392:91070..114573- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00063535 vs. Swiss-Prot (Human)
Match: PLPL6 (Neuropathy target esterase OS=Homo sapiens GN=PNPLA6 PE=1 SV=2) HSP 1 Score: 509.605 bits (1311), Expect = 5.235e-161 Identity = 297/763 (38.93%), Postives = 428/763 (56.09%), Query Frame = 1
Query: 262 LQRQDSEIKRMLKDPPASLLEADFAEVSGSDSMLPAEVMFMLRSVRVFGHFEKPLFFELCKHIVTKTLPKGKILFKPGNMEEAIYIVQTGQINLYLVDKKGTEMLLKEVKPGENIYSVMNILDAIRGNTYYKYAVLMRAAMDSTVLLLPSRAFKRIFEDHPESLVRVVQIVMLRLQQVTFMALHQFLGLSTELISNVVSRKVNEELKSLSVYSLNETVEPLNTKSNEAVCSSAPPVTQTTPNTPRRHFASITSIQEDAQEHQNEPREASSPMKRTSSFSSLKTNNQACSPQQTSDAMDGNASSSTNAPPMKRTGSHGKLVNLYGSSVQSTLGGPKSDFEAVL--GRVGMDINEAGKISQGVDEDMITFDIPRTTAPPVFEGDY------------GGLTKEQEDKMLAAARSDLVKLLNLPTPKLLDNILSIDVVPQGRFLARQGDTDSSLVFLVKGILQIRQR--DKDKEWALFNCVPGEFVGSLSLLTGEPSFFSVKAIAISYVVIISKLNFYNLIKEHPKIVLPVANSMIQKLSSFVRNIDFALDWTMLEAGKPLYSQNADPDSVYIVLNGRLRAVQMQVETGKKTLGDEFGRGEFVGLVDVLTSYPRTNSVHAVRDTELAQIPEGLLNAIKLHYPQVVSRLMQLLGTRILGMKKKSSAP-------PVITNSKLERVGHNLGTVAIFPASNSVPIQNFTFELGLALNDIGPSVILTSDIVTKRFGSSVWDSVHEYVLLNWLGYQEDIHRIVLYQCDXSF 2481
+Q++ ++R K+PP ++LEAD E ++S LP+EV++ML++VRV GHFEKPLF ELC+H+V + L +G +F+PG + +IY+VQ G + L L G E ++KEV PG+++ S+++ILD I G+ + + V RAA DSTVL LP AF +F +PESLVRVVQI+M+RLQ+VTF+ALH +LGL+ EL S+ E++ L ++ S P T+T+P + S ++ E + P +P+ P T D + + + +AP + R V++ G + GGP+SDF+ GR+ + + E PR E Y G Q + AA+ +L KL+ + P LL++ + + G +ARQGD D SL F++ G L + QR DK ++ LF PGE VG L++LTGEP F+++A + ISK +FY +++ P +VL A+++ ++S FVR +DFA+DWT +EAG+ LY Q D YIVLNGRLR+V +Q +GKK L E+GRG+ +G+V+ LT PR +VHAVRDTELA++PEG L IK YPQVV+RL+ LL +ILG ++ P V +S+L NL TVAI P VP+ FT EL AL IGP+++L SDI+ R G+S DS+ E+ L WL QED HRIVLYQ D S
Sbjct: 142 IQKETPTLQR--KEPPPAVLEADLTEGDLANSHLPSEVLYMLKNVRVLGHFEKPLFLELCRHMVFQRLGQGDYVFRPGQPDASIYVVQDGLLELCLPGPDGKECVVKEVVPGDSVNSLLSILDVITGHQHPQRTVSARAARDSTVLRLPVEAFSAVFTKYPESLVRVVQIIMVRLQRVTFLALHNYLGLTNELFSH--------EIQPLRLFP-----------------SPGLP-TRTSPVRGSKRMVSTSATDEPRETPGRPPDPTGAPL-----------------PGPTGDPVKPTSLETPSAPLLSRC------VSMPGD-ISGLQGGPRSDFDMAYERGRISVSLQEEASGGSLAAPARTPTQEPREQPAGACEYSYCEDESATGGCPFGPYQGRQTSSIFEAAKQELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGDQDVSLHFVLWGCLHVYQRMIDKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRISKSDFYEIMRAQPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALYRQGDRSDCTYIVLNGRLRSV-IQRGSGKKELVGEYGRGDLIGVVEALTRQPRATTVHAVRDTELAKLPEGTLGHIKRRYPQVVTRLIHLLSQKILGNLQQLQGPFPAGSGLGVPPHSELTNPASNLATVAILPVCAEVPMVAFTLELQHALQAIGPTLLLNSDIIRARLGASALDSIQEFRLSGWLAQQEDAHRIVLYQTDASL 851 The following BLAST results are available for this feature:
BLAST of TCONS_00063535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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