TCONS_00063587 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063587
Unique Name	TCONS_00063587
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2720

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_394:46209..55730+

transcript sequence

>TCONS_00063587 ID=TCONS_00063587|Name=TCONS_00063587|organism=Clytia hemisphaerica|type=transcript|length=2720bp
CTGGGAATATTATATTGTATTGTTGTGAAAATTGTGTATTTCCCAAATGA
AAATGAGATTTCGAAGACATTCTGCCCCTTTGGGCATTTTATATgagcag
caaaatttgaagttgGATTCGATCTCATCAATCATGGAAAGCAcgaaaga
acaaaagaagaaagaacCCATTCAAGAGGTACTTGCATGTGGCAAACCAT
ACCCAATGGTGGTACTTCCAGTGGAAGGTGATTATTGGATGGAGGGGACG
TACCATATCCTATCACGTGATATGTACGATCGGCCCATCTTCCCGACTAT
CGATCGTAGTCGGTGTGTCTTGGATGACGACCAAACTGTTTATAATTACC
GAAGAAATTTCGCTGGAAAAGAACATACAAATTACGTCGGCAACGATTCT
AAGCATGGTCCAGTCCTGATGTCTGTTCTCCTTGACTCATCCCAACCCGT
ATCCGAACGTCCCGCCCCTAGTCCGCCATCCGCCCAAATGGCAAACCCCC
CTCAACGCCCTAAAGAACAATTCAAAGTGATTTTACGTTTGAAGAATAAA
ACGATCGAAAAAACGATATCGCCCTCGCATTTTTCTTCCGATTGTCCGGG
ACCGAGAGAAATTATGAAGTATATGCTCGAAGATGATGTGGACGTTGACC
GATTCCATCCAGTCGTCGTACCGCGTGCTAGCGAAGAAATTATGCGCTTC
GACGAACACTCTGTTTCCAACTGTTACAAAATTGGAGTTCTGCATCAGAA
ACACGGACAGATTTCAGAAGAAGATTATCTCCAAAATCCCGAAGAAACGC
CAGCTTTGCGAGAATTTTTAGACTGCATTGCAGATCGAGTTGATTTAAAA
GATTTCGAGAGTTACCGAGGTGGCTTGGATGTAAAACATGGGCAAACTGG
AGAACATTCGTATTACACTAATTATAAAGAGAGAGAAGTGATGTTCCACG
TTTCATCCATGATCCCTTACAAACCGAACGATTCTCAACAACTCAGTCGG
AAACGTCACATCGGTAATGACGTCGTCAGTATCGTCTTCCAAGAAGAAAA
CACGCCGTTTTGTCCGAACTCGATCCGCTCGCATTTCCTACACTGTTTCA
TCGTCGTTCAAGTAGAAAACCCTAACTCAGAGGAAACCTATTATAAAGTT
TCAGTGGCGGCTAAAGAGGGCGTTCCAAAATTTGCGCCCAGTCTTCCGAA
CCCTTGCATATTCAAGAGAAGCGACGAGCTAAAGGATTTTCTGTTGACAA
AGATTTTGAACGCTGAAAATGCGGCTGTCAAAAGCGAAAAGTTCTCAGCT
CTAGCGGAGCGTACGAGGAGCATGCTTTTACAAGGAATAGTAACCGACTT
CATCGCCAAAAACGAGAAGATGTTGGATGATGATAATCTCTCGAACGGTA
GCGACAACACAGATACACACCACGTCAAATCTGGAAGCTTCTTATCCACG
TTCCGGTCTGCAATTTATCGATCGTCACAACGTAGCGAGCAAGACAATAT
CTCGATATCTAGTAGCTCTAGTAGTCTCCCTTCAACACTAAATGGTAGTC
ACTCACTTTCGTTGAACGATTTGAATAACTTTGATAGTGAAGAACACCGA
AGAAAAGATATGTCTATGTCAACAAGTCCACGTCCAGGGCGAAAGACTAA
AAAAGACAAAGACAAACATAGCAAGAAAGATCGCGCAAAAAGTGCAATCT
TATCAATCCTTCCGCCCGTCTCTCATCCAATCAGCGAGCAGGATTTTAAC
GACTTAGCATCACCAACTCTCCTTCAAATCTCCACAAAACAATCACCAAC
TTCTTCCAATTCAAATCTCAACGAGCAACCAACGTCACGACCGCGCACGC
GCAGTAAATTTTATACTAACCAATTATTTGACGAATTCGAAGAGCCAGTG
ACGTTGACATCGACCAATCAGATTTCACCACGTTGTCACACCATGAGTGG
TGGAGAAACAAGAAAAGAAAATGGTAGTGATCCATCCATACAGCAGCCGA
AAATCAGTATCACGGCAACCACGGTGACTAGTTCAGACGAGGAAAATAAT
AACGCGAACGACCCTTCACCTTCATCTAGTTCTTCTACAGATACAGCCAA
AGAGGAAATTGAGAAATTACGAGCGGAAATACATAAACTGAAAATCGACA
AAATGGATCTCATACGGCAGAACgtgaAATTGAAAGAACAAAAAAAGTCA
CGTCAGCCGAAACAAGCGTGGTCAGATCCATCAACGGGAGATTAAGAAAT
TAAACGATAAAACGCAGACCAACGGTGATTATCGTTCTCTATCACTCAAA
CATTCGTATGACCCGAGAAAAATGTACAACGCAACTGCTACTACGTTTGC
CGAGTTTGTTTGACCACGACTGATGTTGAACACGCTAGAATGAAAATgat
atatttttgtgaaatgacAGATATAGTCATCAGTGATGTTAGATTTCTGC
ATTTTTATCTTTGTTAAACTAGTCCCGATAGCGATAGGCCAACcgtcttt
ttcaaaaaatgtcataacatttgaaaaaaaaatttcagaaatacGCCATT
TTGCTGCAACTCTTGGGTTTGATGATAAATTTTGTTGAGTTATATATCTA
CCAAATTAATTAGGCTTTTACCTTTCTTTTGTAAATATCTTTataatttt
gctgacatcaacATTTATATTTTCTATTTAGTTTGTGTATTTATTTGATA
TAAAAATGATAATATGCTTG

Run BLAST on NCBI

transcript from alignment at scaffold_394:46209..55730+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063587 ID=TCONS_00063587|Name=TCONS_00063587|organism=Clytia hemisphaerica|type=transcript|length=9522bp|location=Sequence derived from alignment at scaffold_394:46209..55730+ (Clytia hemisphaerica)
CTGGGAATATTATATTGTATTGTTGTGAAAATTGTGTATTTCCCAAATGA
AAATGAGATTTCGAAGACATTCTGCCCCTTTGGGCATTTTATATgaggta
tttttttcatttaagattTGTCCTTCTATCAatatttgtttaattttata
gtatgtgattattttttgagttttggtCTTAAAGTCATCAGTTCTCAATT
TGTTTAAATGGATAGCTAGCCTACAGATTTCTCTGGAAAACCTTATCAAA
AGACTTTTATTGTTATTGATACtaattttatacatttttatttCGTATCA
GGGGGTTTataattttgttattttccTCAATGTTTAGAATTCGTCGATCC
TTTTCGATTCTATAAAATCAGAATGTTCCCATCCttgagtttgaaaaata
ttgttttgaagTGATTCGTTTGAAAGCTTATGAGATAATTGGAATCAGGA
AAGTGTAACATAATCCTTTTTCCTGAAATATCAAACACTGATATGCTTCA
CATATACCGCCAATGTAATCGAATTTGACATTGGAAATTCATCCAATGGA
TAGTCTcaactaatgagaaaataactGTTTTCCCAGTATAATGATGTAAT
AAATATTCCACTCATGAATATCTTATCAACGATCTTTTATATCTTTAACC
AATAATTTATAGATTTTTAGATATTAAGGGATAAGGTTGAGGGAGGCCAT
CGCTTTTATTCGAATCAAAGAAAGCTTCGAATCAAAGAGGCTCAActttg
aaagaaagaaacatTGTTAAATCAGCTTCGTTAATTTAAAGTTTTTCCAT
TTTCGTTTCGTCCCTGATGCGTTTATTTTTCATATATCCTTCTTTCTCTA
CAgcagcaaaatttgaagttgGATTCGATCTCATCAATCATGGAAAGCAc
gaaagaacaaaagaagaaagaacCCATTCAAGAGGTTGGTTTTATCATTT
GCCTGGTTGTTTATTTGTTCGGCGGCAGTTTCATCTAGGGGGCCAATTCT
AGGTCGtggaaatggaaaatttttacCAATAAGATTTTCTTTGGccattt
aaaagattttgtcaacaagtggtttttttgtcactttttcccAACGAAGA
GGGAACGACCGAACGATAAATGCATAATGCACCTCAAAGTAAACGATTCG
TTAGATTGCCTTGACTCACGAGAGTATAAACTTGAACGGAATATTGTTAC
TAAATcagacttttgaaaaattccccatcacaaaaaattttgtacaattt
tttgttaataatGATTGCTTATTAAACCCGTCAGTAACGACTCCCCGTAC
ACAGGAAGTGTGAAGGTTGGTCGAACGCAAAACTCATTTGTATCATGTAT
CACCCACAATTATGATGTGGTCGGATATAGTATACCAAAATGAGATTCTT
TGACACTATTATTATATATAGCGGCTTATGATTAATGGCGAAATTgcttt
taaattaatttttggaaagtcAATTGTTTGACAACTTCTACACATGAAAC
TGACCATTTTTTTGGAAcaaaattttttgggaaatattttttctcctaAC
GTCAGCTCTCTTATAGTCAAATTTTATACGTTGCCTGATCCTGTAGCTAA
CCTGTATACGGGATACGTTGATAAGATACCTTTGGCTGAACCATAAAAAA
TTAATAGTTCCCAAACTATGAATTACAATCTTCTAAGAAAAGTTGATGTT
TAAGAGTCCATGAAGCATTCATAAAACGTTTCTGTTTCAATGTAGGTACT
TGCATGTGGCAAACCATACCCAATGGTGGTACTTCCAGTGGAAGGTGATT
ATTGGATGGAGGGGACGTACCATATCCTATCACGTGATATGTACGATCGG
CCCATCTTCCCGACTATCGATCGTAGTCGGTGTGTCTTGGATGACGACCA
AACTGTTTATAATTACCGAAGAAATTTCGCTGGAAAAGTAAGTTTTTATT
ATGTTACTTGGATGTTCAAGTATCTGAGCAAAGTTGTTCAAAGTTCGTTG
CCTTCAGAAGCACTTTTTTATGAACACAAAAAACTGAGCATTGTATTGTA
GGTATCGATTTTGATCGTTATATCTTGTTAGAATATACCAAGCAAGAAGA
TATATTACTTCAGATCAATCTGGATTTAAAGAATATTTAATATTTACAAA
CTTTTCGATGCCTGGTTTATTTTccaattatttaattttttcatttttaa
acttCTTCTCACTTTATTTTCTTAGGAACATACAAATTACGTCGGCAACG
ATTCTAAGCATGGTCCAGTCCTGATGTCTGTTCTCCTTGACTCATCCCAA
CCCGTATCCGAACGTCCCGCCCCTAGTCCGCCATCCGCCCAAATGGCAAA
CCCCCCTCAACGCCCTAAAGAACAATTCAAAGTGATTTTACGTTTGAAGA
ATAAAACGATCGAAAAAACGATATCGCCCTCGCATTTTTCTTCCGATTGT
CCGGGACCGAGAGAAATTATGAAGGTATGTTATAGCtaagaaatatttca
tttcaattcaaGTTTTATAGGTGATGTAcataaatttcctttttttgaaa
tttgagtgTTATGGAAAAGGCTTTAAAGGCTTACTTGGCTACAAATAATC
ATTTGGGTGGGAATTTCGTCATCTGACTTTCTGACGTATATGGAATGTTT
TAAACTTTTCTACAAAAGAAATCATAATTTCCAATTCTCCCTACAGTATA
TGCTCGAAGATGATGTGGACGTTGACCGATTCCATCCAGTCGTCGTACCG
CGTGCTAGCGAAGAAATTATGCGCTTCGACGAACACTCTGTTTCCAACTG
TTACAAAATTGGAGTTCTGCATCAGAAACACGGACAGGTCAGTTCTCTTa
attgtcaaaataaaaatatgcatCTCAAATAAAAGTATTCGGGTTGTTGC
TGTACTGCAGCCTTTACTAAAAAGCTCCACGAAAACGGCTAAATAATACA
GTAGTTCCACATTAAATACTTATATTATGCATTTACGATTATCTTTAAGC
Tatcataatataatataataaagagttgacacaatatctttgtttcaaac
tcagagtttcatggtgcacaggcaccaatcttcagtgaaatatcTTTAAG
CTATCAACTTTCCTGATTAACGTTTAGTCTGGTTTTCAGGAAGAAACATG
ATTCCATAAGTCTGATTGACACGTTTCTTTTGTCAGACTTCTGAAAACGA
ATAGGTGCCGTCCTGGGAGACGTAGCTCTTCCTCTGTTCTGAAAAGTCTT
TGAGGAAAGTCTGCGTTTTTGAGCCTCTGATTCTTTAAATCTTTCTTTTA
ATCCTCACTTCCTCGCCATACTTGACAGCTTCAATGCTGTATTTATCGTT
CAGAtcatttaacaattattttcatcattattatcTCCATTAGATTTCAG
AAGAAGATTATCTCCAAAATCCCGAAGAAACGCCAGCTTTGCGAGAATTT
TTAGACTGCATTGCAGATCGAGTTGATTTAAAAGATTTCGAGAGTTACCG
AGGTGGCTTGGATGTAAAACATGGGCAAACTGGAGAACATTCGTATTACA
CTAATTATAAAGAGAGGTAGGTGGTTTGGAACTAAATCTTGTTAAACTAC
TTCAAGCATCACCGAATACTGGCATATTTAGACAAGCAATAACTACCAGA
GATGGAGTTAGTTGAGCGACTAAGTACAACTTTTAGAAGTTGTTATAATA
TCTCGTTTAACCAAGAAAGTATACAGCCAACTTTTTACTTGGTGTCCTTT
CTATTCGACAGTCCAAGAAgttaaaattgttttcttttatcatCTTCCTT
CCTTCATATATTTCTTTAGAGAAGTGATGTTCCACGTTTCATCCATGATC
CCTTACAAACCGAACGATTCTCAACAACTCAGTCGGAAACGTCACATCGG
TAATGACGTCGTCAGTATCGTCTTCCAAGAAGAAAACACGCCGTTTTGTC
CGAACTCGATCCGCTCGCATTTCCTACACTGTTTCATCGTCGTTCAAGTA
GAAAACCCTAACTCAGAGGAAACCTATTATAAAGTTTCAGTGGCGGCTAA
AGAGGGCGTTCCAAAATTTGCGCCCAGTCTTCCGAACCCTTGCATATTCA
AGAGAAGCGACGAGCTAAAGGATTTTCTGTTGACAAAGATTTTGAACGCT
GAAAATGCGGCTGTCAAAAGCGAAAAGTTCTCAGCTCTAGCGGTAAGTTT
ATGACTGACATTGATTAAGTCTAAAAGTTATAATGATGTAGTTTTCTTTT
ATTATGAGGACTTATTAGGAAATTCTCCTCTTAAATTTTCTCACACTATC
AGGATGTTAATAATTTAAAATGTATTTGTTAAAGCACGTCTTAGTTCACT
GTATTATCActtctgatagcgctcacgaaAGAGAATCTTTCGaaaaaatg
cgaaaaaaaaGCGGCTCTGGTGATTGAATAAAGATCCGATTCTTAAACTT
GCTTTTCAACCTGTTCATTTCAACAGGAGCGTACGAGGAGCATGCTTTTA
CAAGGAATAGTAACCGACTTCATCGCCAAAAACGAGAAGATGTTGGATGA
TGATAATCTCTCGAACGGTAGCGACAACACAGATACACACCACGTCAAAT
CTGGAAGCTTCTTATCCACGTTCCGGTCTGCAATTTATCGATCGTCACAA
CGTAGCGAGCAAGACAATATCTCGATATCTAGTAGCTCTAGTAGTCTCCC
TTCAACACTAAATGGTAGTCACTCACTTTCGTTGAACGATTTGAATAACT
TTGATAGTGAAGAACACCGAAGAAAAGATATGTCTATGTCAACAAGTCCA
CGTCCAGGGGTGAGcttttctcttattttcttCATCAACCGATATTAATG
GCATGGAACACACCCCTTAAATCTTTATCAAAACATTACTTGGTGTGTGA
TCATTTAATGAGATGTTTTGCCAAATAATACCTTACAGAACGTAAATTTG
GCTACAATTCCAGCTCGACTGGTTGACTCTGTAGATTTGACAGGCCCCAc
gccatgaaattgaaagtggggggAGGGGGCAATGAATATAAAGTCTAAAG
AGGCGcaaccaaaaatttttactttgtaaaaaaggggggggggcatggcc
ccCTCTGGTCCCCCCGGTGGCGTGGGcccttgaatttcaaatttgtttcC
CATTTAACAAATTCAATTTGAatcttaaatttcttattgGTTTTCAAACt
ctaataatattttttacctATTTTCTCTTTCCAGCGAAAGACTAAAAAAG
ACAAAGACAAACATAGCAAGAAAGATCNGGATGTTAATAATTTGAAATGT
ATTTGTTAAAGCACGTCTTAGTTCACTGTATTATCActtctgatagcgct
cacgaaAGAGAATCTTTCGAAAAAATGCGAAAAAAGCGGCTCTGGTGATT
GAATAAAGATCTGATTCCTAAACTTGCTTTTCAACCTGTTCATTTCAACA
GGAGCGTACAAGGAGTATGCTTTTACAAGGAATAGTAACCGACTTCATCG
CCAAAAACGAGAAGATGTTGGATGATGATAATCTCTCGAACGGTAGCGAC
AACACAGATACACACCACGTCAAATCTGGAAGCTTCTTATCCACGTTCCG
GTCTGCAATTTATCGATCGTCACAACGTAGCGAGCAAGACAATATCTCGA
TATCTAGTAGCTCTAGTAGTCTCCCTTCAACACTAAATGGTAGTCACTCA
CTTTCGTTGAACGATTTGAATAACTTTGATAGTGAAGAACACCGAAGAAA
AGATATGTCTATGTCAACAAGTCCACGTCCAGGGGTGAGcttttctctta
ttttcttCATCAACCGATATTAATGGCATGGAACACACCCCTTAAATCTT
TATCAAAACATTACTTGGTGTGTGATCATTTAATGAGATGTTTTGCCAAA
TAATACCTTACAGAACGTAAATTTGGCTACAATTCCAGCTCGACTGGTTG
ACTCTGTAGATTTGACAGGCCCCAcgccatgaaattgaaagtggggggAG
GGGGCAATGAATATAAAGTCTAAAGAGGCGcaaccaaaaatttttacttt
gtaaaaaaggggggggggcatggccccCTCTGGTCCCCCCGGTGGCGTGG
GcccttgaatttcaaatttgtttcCCATTTAACAAATTCAATTTGAatct
taaatttcttattgGTTTTCAAACtctaataatattttttacctATTTTC
TCTTTCCAGCGAAAGACTAAAAAAGACAAAGACAAACATAGCAAGAAAGA
TCGCGCAAAAAGGTAGGATGAAACCAATAGCTTATAATTCATgataattt
attcaaaaaaatagtTTAGGCTAATTTTTCCATAATATATGAATGTTGAT
TCTTCTATTCATGATTCAATCCATCAATCGATGAATGCAACGAGTTCGAT
TTGCTTCATTCAATTCGCGCATtggattgaatatttttttgacaaatatc
AAGAATCAGAAAAAGGGTGCATTGATAAGTCTTGTGCGAACAGAAGAAAT
TTAGTTTGTAAAGTATTTCTTGAAACATGAAATATCTTTGACTGTTAGTT
GCTTCAAGGTTACTTTCAATGAGTTTTCTGCACTTTGAAACCAAGACGCG
CTCAAATgtagaaaacattattttcttttttttttgaaaagtgcacTAGT
CACTACTCTTGAAGTTATAGGGTTAAAGAACaaagattttatctttttaa
ttttcaatattttttatttttttcactaaatTCCAGTGCAATCTTATCAA
TCCTTCCGCCCGTCTCTCATCCAATCAGCGAGCAGGATTTTAACGACTTA
GCATCACCAACTCTCCTTCAAATCTCCACAAAACAATCACCAACTTCTTC
CAATTCAAATCTCAACGAGCAACCAACGTCACGACCGCGCACGCGCAGTA
AATTTTATACTAACCAATTATTTGACGAATTCGAAGAGCCAGTGACGTTG
ACATCGACCAATCAGATTTCACCACGTTGTCACACCATGAGTGGTGGAGA
AACAAGAAAAGTAAGCTTTCTTTCAAATTAACGTGTTTTGTCATTTAAAT
TTTGCttattaaatttatttatttcgaAAGGTAAAATTGTCCAGCCgata
atttgaaaagaaaatcctcAGATTTAGTGGgaacacaggaacgcgggaat
agtgcttataaagagctcttatgaaaaatagaaattgccatGGGAAGAGT
GGTTTGGAATGACattgtattcagtgaacatatagacATAGATCCTAttg
caagtttaatctgcagcgaaatacaacgacgtggtttaatAGTCTATAGA
TTTAGAAGAAGATATTCTGAAAATTATTCTTAGAAATTCAGGTCTAGAAA
AATCGACAACTACTGAAAAATGATCCTTGACATGAATGAAGTTATGGATC
AATATAGGCCTGCTAATGGTCAGATTTTTTGTAGTTGGAATTGGTAAAAA
TTATTATCCTTTCTCGTTCACTTTTTCCATCAGGAAAATGGTAGTGATCC
ATCCATACAGCAGCCGAAAATCAGTATCACGGCAACCACGGTGACTAGTT
CAGACGAGGAAAATAATAACGCGAACGACCCTTCACCTTCATCTAGTTCT
TCTACAGGTTAGTAATAAACATTTTTCTTAAACCTTATCCTAAGATACTT
TAATTTGGGAGGGGGTATTTagaggtacaatttccaacGCCCTGgcaatt
agcccccccccccagtgtaCTTAAGTTTGAACATTTTAAAACCcttctaa
aagtttttttctactGGTAGAAAGTGAGCAAAACCATGAAACTAAGGTTC
GGAGAACAAATTCCCACCTACTTAAAAAGTGTACCGGAGCACTGATTCAG
CGTTTGTCTCGGGTTTTTCTATAGCTAtcactaaaaatttctcttggGTC
AAACATCTAAATTTATTTTAAGTTGAAGGAAATGGTATATAATTACTGTT
TCACGGTGAAACAgctatttaaaatatttaaataaaaacaaagtttccTA
TACTTCTGACGTCTTACTTGCGTTTATTGTGTCTGTGTTGCCAATAGTAA
AACACACATTTAGACACCCTTTCTAATTATCATCGTATTTTTTTTATAGA
TACAGCCAAAGAGGAAATTGAGAAATTACGAGCGGAAATACATAAACTGA
AAATCGACAAAATGGATCTCATACGGCAGAACgtggtgatttttttttta
taaacgtCAGCATTTTTCAATTTGGTTCAGTTGCTTTCCTTATTTTAAAC
CCATTAAGTACCATCACTCCgtaacttcaaatttttgatttaaaatgcgT
GTACACGCCCCAATCAAGGAAAAATCCCCATCTCGACTTTTTTTATACGG
GcgaagtaaaaaaaacaacaggCACACTGCGCTCTTAACTCTAGACCGAC
CGGTACAGgtccgagaaaaaaaattgagcgATCTCATATTATACCAGTTG
CACTTAATGGGTTAATGGAGTATACAGgaaataatgttttgatttaaata
cGCATGATGTTTGAACACTGAAATAACTGATTGTAGTTCACTTAAAAAAT
GTCGACTTTTACAACGAGCAGAGAACGTGAACTAAAACAGACAATGTACA
GAAATTTTCCTTACAAAACCAATGTTAACTTGACTTGACCACTGACGCCG
ACGCTGACCagtttacagaaaaaaaaacttataaaacacatcaaaagaca
CAATCTGACGAACATACTTTTGCAAAACACAAAACGAATTATTCCTAAAA
gtgaaaagttcaaaattttgattttattagaAATTGAAAGAACAAAAAAA
GTCACGTCAGCCGAAACAAGCGTGGTCAGGTAAGATAACCTTGGTCTTTT
ATATAATACAACCTCCGGTGCCGGAGGTTTTGTGGAGAAAGTGCCTAAGA
AATTTTGCATGACTTAAAAAATTggcctaaaaattgaaattctaaaaaca
aCTAACATGCGTCAATCACTGCCTGCTCAATATAACAGATTACATAAATG
TTTTACGAatctatttttctatttcagATCCATCAACGGGAGATTAAGAA
ATTAAACGATAAAACGCAGACCAACGGTGATTATCGTTCTCTATCACTCA
AACATTCGTATGACCCGAGAAAAATGTACAACGCAACTGCTACTACGTTT
GCCGAGTTTGTTTGACCACGACTGATGTTGAACACGCTAGAATGAAAATg
atatatttttgtgaaatgacAGATATAGTCATCAGTGATGTTAGATTTCT
GCATTTTTATCTTTGTTAAACTAGTCCCGATAGCGATAGGCCAACcgtct
ttttcaaaaaatgtcataacatttgaaaaaaaaatttcagaaatacGCCA
TTTTGCTGCAACTCTTGGGTTTGATGATAAATTTTGTTGAGTTATATATC
TACCAAATTAATTAGGCTTTTACCTTTCTTTTGTAAATATCTTTataatt
ttgctgacatcaacATTTATATTTTCTATTTAGTTTGTGTATTTATTTGA
TATAAAAATGATAATATGCTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039855	XLOC_039855	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_394	supercontig	scaffold_394:46209..55730 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.413041

Blast

[Close]

BLAST of TCONS_00063587 vs. Swiss-Prot (Human)
Match: RPGP2 (Rap1 GTPase-activating protein 2 OS=Homo sapiens GN=RAP1GAP2 PE=1 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 3.686e-101
Identity = 191/470 (40.64%), Postives = 273/470 (58.09%), Query Frame = 2

Query:   86 ILYEQQNLKLDSISSIMESTKEQKKKEP-IQEVLACGKPYPMVVLPVEGDYWME-----GTYHILSRDMYDRP----IFPTIDRSRCVLDDDQTVYNYRRNFAGKEHTNYVGNDSKHGPVLMSVLLDSSQPVSERPAPSPPSAQMANPPQRPKEQFKVILRLKNKTIEKTISPSHFSSDCPGPREIMKYMLEDDVDVDRFHPVVVPRASEEIMRFDEHSVSNCYKIGVLHQKHGQISEEDYLQNPEETPALREFLDCIADRVDLKDFESYRGGLDVKHGQTGEHSYYTNYKEREVMFHVSSMIPYKPNDSQQLSRKRHIGNDVVSIVFQEENTPFCPNSIRSHFLHCFIVVQVENPNSEETYYKVSVAAKEGVPKFAPSLPNPCIFKRSDELKDFLLTKILNAENAAVKSEKFSALAERTRSMLLQGIVTDFIAKNEKMXXXXXXXXXXXXXXXHHVKSGSFLSTFRSAI 1465
            +L + Q +KL+      +  K+     P I EV+  G PYP V+LP  G YW+E     GT   L   + +      + P     +  L+       YRR+F GK+H N+    S  G +++SV  + ++ +                     E  +VILR K KT+ + I P    S  P   +I K   +D V + RF+PV+ P+AS+ I+ +DEH V+N +K GV++QK  Q  EE+   N EE+PA +EFLD + D + L+DF+ +RGGLDV HGQTG  S YT +++RE+MFHVS+ +P+   D+QQL RKRHIGND+V+I+FQEENTPF P+ I S+FLH +IVVQVE P +E   YKVSV A+E VP F P LP+P +F++  E ++FLLTK+ NAENA  KS+KF+ L +RTR+ LL  +  +  A  + M     L  G +     +   G FL +F+ AI
Sbjct:   62 MLEKMQGIKLEEQKPGPQKNKDDYIPYPSIDEVVEKGGPYPQVILPQFGGYWIEDPENVGTPTSLGSSICEEEEEDNLSPNTFGYK--LECKGEARAYRRHFLGKDHLNFYCTGSSLGNLILSVKCEEAEGI---------------------EYLRVILRSKLKTVHERI-PLAGLSKLPSVPQIAKAFCDDAVGL-RFNPVLYPKASQMIVSYDEHEVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLDLLGDTITLQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAM-----LGLGPEEDKFENGGHGGFLESFKRAI 501

The following BLAST results are available for this feature:

BLAST of TCONS_00063587 vs. Swiss-Prot (Human)

BLAST of TCONS_00063587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RPGP2	3.686e-101	40.64	Rap1 GTPase-activating protein 2 OS=Homo sapiens G...	[more]

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TCONS_00063587 (transcript) - C. hemisphaerica