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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063608 ID=TCONS_00063608|Name=TCONS_00063608|organism=Clytia hemisphaerica|type=transcript|length=469bp ACAACTATTTGATTGATGAAATCAATACAACTGGGAAGGGGGCAAATGCA ACCATCAGTTACTTACATCACTTTTTCGAGTATTATGGAATGGGTGAGAC GGACTCATATCTACATGCTGATAACTGCTCAGAATAAGAACAATGCTTTT ATTTGGTATTTGATGTGGAGGATTTTGAATGGTTTCCATGAAAAGATTGA GTACAGTTTCATGATAGCCGGCCACACGAAATTCAGCTGTGACAGGTGCT TCGGCAGCTTCAAAAAGAAACTACGATCAACTCGAGTATCATCTCCGTAC GAGATCGCTGATGTTTACGACCAATCAAAATGTAATTTCGCTGTACTTGT TGGTAACCACAACAAAGATATCACTGTTCAAACGTATGACTGGTCACATT ACTTTGAAAAGGAGTTACGGTTCCAGACCATCAAAGATATTCTTAAATAT CACCATTTCAGGATGTCGA Run BLAST on NCBI protein sequence of TCONS_00063608-protein >TCONS_00063608-protein ID=TCONS_00063608-protein|Name=TCONS_00063608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MKSIQLGRGQMQPSVTYITFSSIMEWVRRTHIYMLITAQNKNNAFIWYLM WRILNGFHEKIEYSFMIAGHTKFSCDRCFGSFKKKLRSTRVSSPYEIADV YDQSKCNFAVLVGNHNKDITVQTYDWSHYFEKELRFQTIKDILKYHHFRM S Run BLAST on NCBI transcript from alignment at scaffold_396:11095..14416+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063608 ID=TCONS_00063608|Name=TCONS_00063608|organism=Clytia hemisphaerica|type=transcript|length=3322bp|location=Sequence derived from alignment at scaffold_396:11095..14416+ (Clytia hemisphaerica) ACAACTATTTGATTGATGAAATCAATACAACTGGGAAGGGGGCAAATGCA
ACCATCAGTTACTTACATCACTTTTTCGAGTATTATGGAATGGGTGAGAC
GGACTCATATCTACATGCTGATAACTGCTCAGGTAATGCTGGACTACAAA
AATGTTAGAATTTGCTGACAACCAGGTGACCTAGCCAAAATTTAAATGct
atctttttaaagaaaactttcCCATTCAAAAAAACTGttgtcttaatttt
ttttattgtaaactACAGGCTTGATATATGCTAAAGTTTTTCTCAGATTT
GAGCCTGGATATGCTTATGAAAAATGTTGACTGACTCTATTTTTGTGTGT
ACTAATCAAGGAATTTCGCACAAATCAAATTTTGCaagttaacttttttt
tttttttcactgggTTAATGGCAAATCCATTGTGTCGCTGGGTGAGATTT
TGGATCGGTCCAATACTCGGTTCCATGAAAATAActgaaatgaaatttca
gtccgCCCTCAAAAATGCATGTAAACAATTTGGAaaaatatcaaccagtc
ccTGAACTGAGATTTAcacttgaaaaaaattgcaaaaattaatccagtTT
AAGTAAATATATTCTTTTCACTTTCAGGACAGAATAAGAACAATGCTTTT
ATTTGGTATTTGATGTGGAGGATNGataaacaaaaattgcaaaaattaat
ccagtTTAAGTAAATATATTATTTTCACTTTCAGGACAGAATAAGAACAA
TGCTTTTATTTGGTATTTGATGTGGAGGATTTTGAATGGTTTCCATGAAA
AGATTGAGTACAGTTTCATGATAGCCGGCCACACGAAATTCAGCTGTGAC
AGgtaataaaagaattttgttGGGTAAGTTTGTTGTTTCAAGCAAGGTAA
ACAGACTTAAAAATTAATTCCACTTTTTAAGTTGGTTTATTACCTGTCAC
AGCTTTTAATTCAGACTTAAGTCTTGTTCAGCAtaattttagacaaaatt
tttaaaacacaattcattaaaaattacaaaaatagttGTCGAATAAAACT
GAACTTTAAAAAATGGTGGTTGTCGTCACCTATGACCAACCCTTCTCAAA
ACTTACCaacccagaaaatttttttactctGAAAATTAAATAGAAATTTT
GNCAAttcattaaaaattacaaaaatagttGTCGAATAAAACTGAACTTT
AAAAAATGGTGGTTGTCGTCACCTATGACCAACCCTTCTCAAAACTTACC
aacccagaaaatttttttactctgaaaattaaatagaaattttgaaaaat
catcaaaacaaaatatttcttttcgaCCGACCGGTCAATCTAGGGTCAGG
TGATGACAAACCAATATATATTTTCAAGCGCAGCCtaaaatgtatatttt
ttgTATCTTCCTTAACGTGCTTCGGCAGCTTCAAAAAGAAACTACGATCA
ACTCGAGTATCATCTCTGATGTTTGCGACTAATCAAAATGTAATTTCGCT
GTACTTGTTGGTAACCACAACAAAGATAtcaccacagatctgtaaagccc
gaaggataTCACTGTTCAAACGTATGACTGTTCACATTACTTTGAAAAGG
AGTTACGGTTCCAGACCATCAAAGATTTTCTTAAATATCACCATTTCAGG
ATGTCGAAGGATCAGCCTGGAATTGTTAAGTGTTATAAATCACTAGATAA
TGAACCAGTCGAGTTCTCCATTTTCATTCAGCGAAATCCACCAAAAGTGA
CTGCTGCATTACCGAAGATCGTCCCACCGAAAGGATTCACNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCAGCAAACCCACTATCCATATAACC
CACTCCAACCTGGgccgatttttttcaaaacccccAGAAAGTGTGGGATT
TTTGGGATTTGTAATAAACCTTCAGTACAACTATTTGATTGATGAAATCA
ATACAACTGGGAAGGGGGCAAATGCAACCATCAGTTATTTACATCACTTT
TTCGAGTATTATGGAATGGGTGAGACGGACTCATATCTACATGCTGATAA
CTGCTCAGGTAATACTGGACTACAAAAATGTTAGAATTTGCTGACAACCA
GGTGACCTAGCCAAAATTTAAATGctatctttttaaagaaaacttttcca
ttcaaaaaaactgttctcttaattttttttattgtaaactACAGGCTTGA
TATATGCTAAAGTTTTTCTCAGATTTGAGCCTGGATATGCTTATGAAAAA
TGTTGACTGGCTCTATTTTTGTGTGGACTAATCAAGGAATTTTGCACAAA
TCAAATTTTGCaagttaactttttattttttttcactggGTTAATGCCAA
ATCCATTGTGTCGCTGGGTGAGATTTTGGATCGGTCCAATACTCGGTTCC
ATGAAAATAActgaaatgaaatttcagtccgCCCCCAAAAATGCATGTAA
ACAATTTGGAAAAATATCAACCCGCCCCTGAACTGAGATTTACActtgaa
taaacaaaaattgcaaaaattaatccagtTTAAGTAAATATATTCTTTTC
ACTTTCAGGACAGAATAAGCACAATGCTTTTATTTGGTATTTGATGTGGA
GGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTTCATGATAGCC
GGCCACATGAAATTCAGCTGTGACAGGTAATAAATGAATTTTGTTGGGTA
AGTTTGTTGTTTCAAGCAAGGTAAAAACAGACTTAAAAATTAATACCACT
TTAAAAGTTGGTTTATTACCTGTCACAGCTTTTAATTCAGACTTAAGTCT
TGTTCAGCAtaattttagacaaaatttttaaaacataattcattaaaaat
tacaaaaatagttGTCGAATAAGACTGAACTTTAAAAAATGGTGGTTGTC
GTCACCTATGACCAACCCTTCTCGAAACTTACCaacccagaaaatttttt
tactctgaaaattaaatagaaattttgaaaaatcttcaaaacaaaatatt
tcttttcgaCCGTCCGGCCAATCTAGGGTCAGGTGATGACAAACCAATAT
ATATTTTCAAGCGCAGCCTAAAATGTATATTTTTGTATCTTTCTTAAGGT
GCTTCGGCAGCTTCAAAAAGAAACTACGATCAACTCGAGTATCATCTCCG
TACGAGATCGCTGATGTTTACGACCAATCAAAATGTAATTTCGCTGTACT
TGTTGGTAACCACAACAAAGATATCACTGTTCAAACGTATGACTGGTCAC
ATTACTTTGAAAAGGAGTTACGGTTCCAGACCATCAAAGATATTCTTAAA
TATCACCATTTCAGGATGTCGA Coding sequence (CDS) from alignment at scaffold_396:11095..14416+ >TCONS_00063608 ID=TCONS_00063608|Name=TCONS_00063608|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_396:11095..14416+ (Clytia hemisphaerica) ATGAAATCAATACAACTGGGAAGGGGGCAAATGCAACCATCAGTTACTTA CATCACTTTTTCGAGTATTATGGAATGGGTGAGACGGACTCATATCTACA TGCTGATAACTGCTCAGAATAAGAACAATGCTTTTATTTGGTATTTGATG TGGAGGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTTCATGAT AGCCGGCCACACGAAATTCAGCTGTGACAGGTGCTTCGGCAGCTTCAAAA AGAAACTACGATCAACTCGAGTATCATCTCCGTACGAGATCGCTGATGTT TACGACCAATCAAAATGTAATTTCGCTGTACTTGTTGGTAACCACAACAA AGATATCACTGTTCAAACGTATGACTGGTCACATTACTTTGAAAAGGAGT TACGGTTCCAGACCATCAAAGATATTCTTAAATATCACCATTTCAGGATG TCGATGAAATCAATACAACTGGGAAGGGGGCAAATGCAACCATCAGTTAC TTACATCACTTTTTCGAGTATTATGGAATGGGTGAGACGGACTCATATCT ACATGCTGATAACTGCTCAGAATAAGAACAATGCTTTTATTTGGTATTTG ATGTGGAGGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTTCAT GATAGCCGGCCACACGAAATTCAGCTGTGACAGGTGCTTCGGCAGCTTCA AAAAGAAACTACGATCAACTCGAGTATCATCTCCGTACGAGATCGCTGAT GTTTACGACCAATCAAAATGTAATTTCGCTGTACTTGTTGGTAACCACAA CAAAGATATCACTGTTCAAACGTATGACTGGTCACATTACTTTGAAAAGG AGTTACGGTTCCAGACCATCAAAGATATTCTTAAATATCACCATTTCAGG ATGTCGATGAAATCAATACAACTGGGAAGGGGGCAAATGCAACCATCAGT TACTTACATCACTTTTTCGAGTATTATGGAATGGGTGAGACGGACTCATA TCTACATGCTGATAACTGCTCAGAATAAGAACAATGCTTTTATTTGGTAT TTGATGTGGAGGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTT CATGATAGCCGGCCACACGAAATTCAGCTGTGACAGGTGCTTCGGCAGCT TCAAAAAGAAACTACGATCAACTCGAGTATCATCTCCGTACGAGATCGCT GATGTTTACGACCAATCAAAATGTAATTTCGCTGTACTTGTTGGTAACCA CAACAAAGATATCACTGTTCAAACGTATGACTGGTCACATTACTTTGAAA AGGAGTTACGGTTCCAGACCATCAAAGATATTCTTAAATATCACCATTTC AGGATGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063608-exon-scaffold_396-1491911889:11095..11226 | TCONS_00063608-exon-scaffold_396-1491911889:11095..11226 | Clytia hemisphaerica | exon |
TCONS_00063608-exon-scaffold_396-1510915933:11095..11226 | TCONS_00063608-exon-scaffold_396-1510915933:11095..11226 | Clytia hemisphaerica | exon |
TCONS_00063608-exon-scaffold_396-1575043694:11095..11226 | TCONS_00063608-exon-scaffold_396-1575043694:11095..11226 | Clytia hemisphaerica | exon |
TCONS_00063608-exon-scaffold_396-1491911889:11834..11946 | TCONS_00063608-exon-scaffold_396-1491911889:11834..11946 | Clytia hemisphaerica | exon |
TCONS_00063608-exon-scaffold_396-1510915933:11834..11946 | TCONS_00063608-exon-scaffold_396-1510915933:11834..11946 | Clytia hemisphaerica | exon |
TCONS_00063608-exon-scaffold_396-1575043694:11834..11946 | TCONS_00063608-exon-scaffold_396-1575043694:11834..11946 | Clytia hemisphaerica | exon |
TCONS_00063608-exon-scaffold_396-1491911889:14193..14416 | TCONS_00063608-exon-scaffold_396-1491911889:14193..14416 | Clytia hemisphaerica | exon |
TCONS_00063608-exon-scaffold_396-1510915933:14193..14416 | TCONS_00063608-exon-scaffold_396-1510915933:14193..14416 | Clytia hemisphaerica | exon |
TCONS_00063608-exon-scaffold_396-1575043694:14193..14416 | TCONS_00063608-exon-scaffold_396-1575043694:14193..14416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_396 | supercontig | scaffold_396:11095..14416 + |
Blast
The following BLAST results are available for this feature:
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