TCONS_00063608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063608
Unique NameTCONS_00063608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063608 ID=TCONS_00063608|Name=TCONS_00063608|organism=Clytia hemisphaerica|type=transcript|length=469bp
ACAACTATTTGATTGATGAAATCAATACAACTGGGAAGGGGGCAAATGCA
ACCATCAGTTACTTACATCACTTTTTCGAGTATTATGGAATGGGTGAGAC
GGACTCATATCTACATGCTGATAACTGCTCAGAATAAGAACAATGCTTTT
ATTTGGTATTTGATGTGGAGGATTTTGAATGGTTTCCATGAAAAGATTGA
GTACAGTTTCATGATAGCCGGCCACACGAAATTCAGCTGTGACAGGTGCT
TCGGCAGCTTCAAAAAGAAACTACGATCAACTCGAGTATCATCTCCGTAC
GAGATCGCTGATGTTTACGACCAATCAAAATGTAATTTCGCTGTACTTGT
TGGTAACCACAACAAAGATATCACTGTTCAAACGTATGACTGGTCACATT
ACTTTGAAAAGGAGTTACGGTTCCAGACCATCAAAGATATTCTTAAATAT
CACCATTTCAGGATGTCGA
Run BLAST on NCBI

protein sequence of TCONS_00063608-protein

>TCONS_00063608-protein ID=TCONS_00063608-protein|Name=TCONS_00063608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MKSIQLGRGQMQPSVTYITFSSIMEWVRRTHIYMLITAQNKNNAFIWYLM
WRILNGFHEKIEYSFMIAGHTKFSCDRCFGSFKKKLRSTRVSSPYEIADV
YDQSKCNFAVLVGNHNKDITVQTYDWSHYFEKELRFQTIKDILKYHHFRM
S
Run BLAST on NCBI

transcript from alignment at scaffold_396:11095..14416+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063608 ID=TCONS_00063608|Name=TCONS_00063608|organism=Clytia hemisphaerica|type=transcript|length=3322bp|location=Sequence derived from alignment at scaffold_396:11095..14416+ (Clytia hemisphaerica)
ACAACTATTTGATTGATGAAATCAATACAACTGGGAAGGGGGCAAATGCA ACCATCAGTTACTTACATCACTTTTTCGAGTATTATGGAATGGGTGAGAC GGACTCATATCTACATGCTGATAACTGCTCAGGTAATGCTGGACTACAAA AATGTTAGAATTTGCTGACAACCAGGTGACCTAGCCAAAATTTAAATGct atctttttaaagaaaactttcCCATTCAAAAAAACTGttgtcttaatttt ttttattgtaaactACAGGCTTGATATATGCTAAAGTTTTTCTCAGATTT GAGCCTGGATATGCTTATGAAAAATGTTGACTGACTCTATTTTTGTGTGT ACTAATCAAGGAATTTCGCACAAATCAAATTTTGCaagttaacttttttt tttttttcactgggTTAATGGCAAATCCATTGTGTCGCTGGGTGAGATTT TGGATCGGTCCAATACTCGGTTCCATGAAAATAActgaaatgaaatttca gtccgCCCTCAAAAATGCATGTAAACAATTTGGAaaaatatcaaccagtc ccTGAACTGAGATTTAcacttgaaaaaaattgcaaaaattaatccagtTT AAGTAAATATATTCTTTTCACTTTCAGGACAGAATAAGAACAATGCTTTT ATTTGGTATTTGATGTGGAGGATNGataaacaaaaattgcaaaaattaat ccagtTTAAGTAAATATATTATTTTCACTTTCAGGACAGAATAAGAACAA TGCTTTTATTTGGTATTTGATGTGGAGGATTTTGAATGGTTTCCATGAAA AGATTGAGTACAGTTTCATGATAGCCGGCCACACGAAATTCAGCTGTGAC AGgtaataaaagaattttgttGGGTAAGTTTGTTGTTTCAAGCAAGGTAA ACAGACTTAAAAATTAATTCCACTTTTTAAGTTGGTTTATTACCTGTCAC AGCTTTTAATTCAGACTTAAGTCTTGTTCAGCAtaattttagacaaaatt tttaaaacacaattcattaaaaattacaaaaatagttGTCGAATAAAACT GAACTTTAAAAAATGGTGGTTGTCGTCACCTATGACCAACCCTTCTCAAA ACTTACCaacccagaaaatttttttactctGAAAATTAAATAGAAATTTT GNCAAttcattaaaaattacaaaaatagttGTCGAATAAAACTGAACTTT AAAAAATGGTGGTTGTCGTCACCTATGACCAACCCTTCTCAAAACTTACC aacccagaaaatttttttactctgaaaattaaatagaaattttgaaaaat catcaaaacaaaatatttcttttcgaCCGACCGGTCAATCTAGGGTCAGG TGATGACAAACCAATATATATTTTCAAGCGCAGCCtaaaatgtatatttt ttgTATCTTCCTTAACGTGCTTCGGCAGCTTCAAAAAGAAACTACGATCA ACTCGAGTATCATCTCTGATGTTTGCGACTAATCAAAATGTAATTTCGCT GTACTTGTTGGTAACCACAACAAAGATAtcaccacagatctgtaaagccc gaaggataTCACTGTTCAAACGTATGACTGTTCACATTACTTTGAAAAGG AGTTACGGTTCCAGACCATCAAAGATTTTCTTAAATATCACCATTTCAGG ATGTCGAAGGATCAGCCTGGAATTGTTAAGTGTTATAAATCACTAGATAA TGAACCAGTCGAGTTCTCCATTTTCATTCAGCGAAATCCACCAAAAGTGA CTGCTGCATTACCGAAGATCGTCCCACCGAAAGGATTCACNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNCCAGCAAACCCACTATCCATATAACC CACTCCAACCTGGgccgatttttttcaaaacccccAGAAAGTGTGGGATT TTTGGGATTTGTAATAAACCTTCAGTACAACTATTTGATTGATGAAATCA ATACAACTGGGAAGGGGGCAAATGCAACCATCAGTTATTTACATCACTTT TTCGAGTATTATGGAATGGGTGAGACGGACTCATATCTACATGCTGATAA CTGCTCAGGTAATACTGGACTACAAAAATGTTAGAATTTGCTGACAACCA GGTGACCTAGCCAAAATTTAAATGctatctttttaaagaaaacttttcca ttcaaaaaaactgttctcttaattttttttattgtaaactACAGGCTTGA TATATGCTAAAGTTTTTCTCAGATTTGAGCCTGGATATGCTTATGAAAAA TGTTGACTGGCTCTATTTTTGTGTGGACTAATCAAGGAATTTTGCACAAA TCAAATTTTGCaagttaactttttattttttttcactggGTTAATGCCAA ATCCATTGTGTCGCTGGGTGAGATTTTGGATCGGTCCAATACTCGGTTCC ATGAAAATAActgaaatgaaatttcagtccgCCCCCAAAAATGCATGTAA ACAATTTGGAAAAATATCAACCCGCCCCTGAACTGAGATTTACActtgaa taaacaaaaattgcaaaaattaatccagtTTAAGTAAATATATTCTTTTC ACTTTCAGGACAGAATAAGCACAATGCTTTTATTTGGTATTTGATGTGGA GGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTTCATGATAGCC GGCCACATGAAATTCAGCTGTGACAGGTAATAAATGAATTTTGTTGGGTA AGTTTGTTGTTTCAAGCAAGGTAAAAACAGACTTAAAAATTAATACCACT TTAAAAGTTGGTTTATTACCTGTCACAGCTTTTAATTCAGACTTAAGTCT TGTTCAGCAtaattttagacaaaatttttaaaacataattcattaaaaat tacaaaaatagttGTCGAATAAGACTGAACTTTAAAAAATGGTGGTTGTC GTCACCTATGACCAACCCTTCTCGAAACTTACCaacccagaaaatttttt tactctgaaaattaaatagaaattttgaaaaatcttcaaaacaaaatatt tcttttcgaCCGTCCGGCCAATCTAGGGTCAGGTGATGACAAACCAATAT ATATTTTCAAGCGCAGCCTAAAATGTATATTTTTGTATCTTTCTTAAGGT GCTTCGGCAGCTTCAAAAAGAAACTACGATCAACTCGAGTATCATCTCCG TACGAGATCGCTGATGTTTACGACCAATCAAAATGTAATTTCGCTGTACT TGTTGGTAACCACAACAAAGATATCACTGTTCAAACGTATGACTGGTCAC ATTACTTTGAAAAGGAGTTACGGTTCCAGACCATCAAAGATATTCTTAAA TATCACCATTTCAGGATGTCGA

Coding sequence (CDS) from alignment at scaffold_396:11095..14416+

>TCONS_00063608 ID=TCONS_00063608|Name=TCONS_00063608|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_396:11095..14416+ (Clytia hemisphaerica)
ATGAAATCAATACAACTGGGAAGGGGGCAAATGCAACCATCAGTTACTTA
CATCACTTTTTCGAGTATTATGGAATGGGTGAGACGGACTCATATCTACA
TGCTGATAACTGCTCAGAATAAGAACAATGCTTTTATTTGGTATTTGATG
TGGAGGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTTCATGAT
AGCCGGCCACACGAAATTCAGCTGTGACAGGTGCTTCGGCAGCTTCAAAA
AGAAACTACGATCAACTCGAGTATCATCTCCGTACGAGATCGCTGATGTT
TACGACCAATCAAAATGTAATTTCGCTGTACTTGTTGGTAACCACAACAA
AGATATCACTGTTCAAACGTATGACTGGTCACATTACTTTGAAAAGGAGT
TACGGTTCCAGACCATCAAAGATATTCTTAAATATCACCATTTCAGGATG
TCGATGAAATCAATACAACTGGGAAGGGGGCAAATGCAACCATCAGTTAC
TTACATCACTTTTTCGAGTATTATGGAATGGGTGAGACGGACTCATATCT
ACATGCTGATAACTGCTCAGAATAAGAACAATGCTTTTATTTGGTATTTG
ATGTGGAGGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTTCAT
GATAGCCGGCCACACGAAATTCAGCTGTGACAGGTGCTTCGGCAGCTTCA
AAAAGAAACTACGATCAACTCGAGTATCATCTCCGTACGAGATCGCTGAT
GTTTACGACCAATCAAAATGTAATTTCGCTGTACTTGTTGGTAACCACAA
CAAAGATATCACTGTTCAAACGTATGACTGGTCACATTACTTTGAAAAGG
AGTTACGGTTCCAGACCATCAAAGATATTCTTAAATATCACCATTTCAGG
ATGTCGATGAAATCAATACAACTGGGAAGGGGGCAAATGCAACCATCAGT
TACTTACATCACTTTTTCGAGTATTATGGAATGGGTGAGACGGACTCATA
TCTACATGCTGATAACTGCTCAGAATAAGAACAATGCTTTTATTTGGTAT
TTGATGTGGAGGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTT
CATGATAGCCGGCCACACGAAATTCAGCTGTGACAGGTGCTTCGGCAGCT
TCAAAAAGAAACTACGATCAACTCGAGTATCATCTCCGTACGAGATCGCT
GATGTTTACGACCAATCAAAATGTAATTTCGCTGTACTTGTTGGTAACCA
CAACAAAGATATCACTGTTCAAACGTATGACTGGTCACATTACTTTGAAA
AGGAGTTACGGTTCCAGACCATCAAAGATATTCTTAAATATCACCATTTC
AGGATGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039868XLOC_039868Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063608-proteinTCONS_00063608-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063608-exon-scaffold_396-1491911889:11095..11226TCONS_00063608-exon-scaffold_396-1491911889:11095..11226Clytia hemisphaericaexon
TCONS_00063608-exon-scaffold_396-1510915933:11095..11226TCONS_00063608-exon-scaffold_396-1510915933:11095..11226Clytia hemisphaericaexon
TCONS_00063608-exon-scaffold_396-1575043694:11095..11226TCONS_00063608-exon-scaffold_396-1575043694:11095..11226Clytia hemisphaericaexon
TCONS_00063608-exon-scaffold_396-1491911889:11834..11946TCONS_00063608-exon-scaffold_396-1491911889:11834..11946Clytia hemisphaericaexon
TCONS_00063608-exon-scaffold_396-1510915933:11834..11946TCONS_00063608-exon-scaffold_396-1510915933:11834..11946Clytia hemisphaericaexon
TCONS_00063608-exon-scaffold_396-1575043694:11834..11946TCONS_00063608-exon-scaffold_396-1575043694:11834..11946Clytia hemisphaericaexon
TCONS_00063608-exon-scaffold_396-1491911889:14193..14416TCONS_00063608-exon-scaffold_396-1491911889:14193..14416Clytia hemisphaericaexon
TCONS_00063608-exon-scaffold_396-1510915933:14193..14416TCONS_00063608-exon-scaffold_396-1510915933:14193..14416Clytia hemisphaericaexon
TCONS_00063608-exon-scaffold_396-1575043694:14193..14416TCONS_00063608-exon-scaffold_396-1575043694:14193..14416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_396supercontigscaffold_396:11095..14416 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.263123 0 0 0 0.376288 0.521696 0.528971 1.67331 0.345806 0 0 0.156012 0.332005 0 0.867264 0.547244 0 0.688133 0 0.35225 0.4828 0.481051 0.0666012 0 0.239118 0.172496 0 0 0.736515 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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