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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063611 ID=TCONS_00063611|Name=TCONS_00063611|organism=Clytia hemisphaerica|type=transcript|length=711bp AGAAAGGGTGTGTAGGTGTAATCTGGCTCGAAAGAGCCATCATTTCTTTA CATGAActccttttttataaaaacttattacaaaaatgattttgattttt agtaaaTCATGCAACAAGATGCTTCATTGACCTTTCACCGAAAGACACCT TCGAACGAATCGTTAATGAACCTGACAGAAATATCCTCATGGTTAAAATA GGAGCAATTGAGGTGAAAGACGTCCCTTGGTAAAGGGAAACTTAAGGACA ATTTTATACAAGGCTTCATTCCGCATTTACTGAGCATTTATGATGGCGAA AGTAAAGTTGGTTCAATTGATTGGACCGTGTTGGGTCAAGCCTTGTCGTT TCCATCCACCTATGAATTGCCGGATAGTGTCAAGGTACGTTNGACCGTGT TGGGTCAAGCCTTTTCGTTTCCATCCACCTATGAATTGCCGGATAGTGTC AAGAATGCTCTTCGTGAAAAAGAAACTGTCTTCGGCATCTACAACACAAA CGATCATTGGAATCTATTACTTATATTTCCAAAAAAGCAAAAGCAGCTTT GGTTGGCAAACCCAACCAGTGAAGGAACAATGGAAACAGAAAATGTCGTC AGGACATGGGAATCGGTAATGGCTTCAAACTTTAACGAATACACTTCTTG GACAATGTATTCACAGCAACATGCGGTTCAAGAGGATGCTGTCTCGTGTG GTGTTTTCTGT Run BLAST on NCBI transcript from alignment at scaffold_396:54287..67672- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063611 ID=TCONS_00063611|Name=TCONS_00063611|organism=Clytia hemisphaerica|type=transcript|length=13386bp|location=Sequence derived from alignment at scaffold_396:54287..67672- (Clytia hemisphaerica) AGAAAGGGTGTGTAGGTGTAATCTGGCTCGAAAGAGCCATCATTTCTTTA
CATGAACTCCTTTTTTATAAAAACTTATTACAAAAATGATTTTGATTTTT
AGTAAATCATGCAACAAGATGCTTCATTGACCTTTCACCGAAAGACAGTA
AGTGCGATATTTGGTTTAGGTAATAGAGTATAATGCTTAGGATAGGGTTG
GGATCATACTCTTACAGGAAACATGGTGATAGACACTCTACTTTCACTGA
TAAACAGTTCTGCCTGTTATATTGAGGGTTAAACTGTAATATTTTATCTT
GAAAACTCTATTATATCGCATCCGATTTCACATGATAGTTGTTGCGATCC
TTGAAAGATTACGTGGATCATAATTGATCATTTTGAAAGCAGACGGGGCG
ATAGTTATTCAATTTACAGTAAATATTAATAGAGTAATTCCTAGCAACGT
CAATTTTACCCACGATCAGAAATTCTTTATAAAATTGCACGAAGAATATG
TATACGAGTCACACCTTCCTCCAGGCTGTGTGTTATCACCCTCGACTCCA
TGGCTTATCTAACCCCCTTACGCTATTGATGATTCTGATGGACGCGTTGA
CGGGGGATATAAGCCCTGGTGCACTTTAAAAACGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCCGCCATTTT
ACAAATTCCGAGAATTTGAAAAAATCAAAACAAGATAAATATGTAATGAA
TGGCTGATGTAAATAGTAAATTCAAAAGTCAAAGACAGATTCTCAACATG
AAGAAGTTGAAGTATGAAGAACTCTTGGCAAACCAATCACACAAAATTGC
AAAATGTCATTTAAATGAAACTTGATTGGCAGAGAAAGATACTACGAGAC
CTTGATAAGCAGTCTATCCCTGCACTGAGCGAACTGGAACTGCTTGTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCATAGGACCAGTAAATATTTCTAACTTTTTTTGTT
AATCGAATAAAACGAAATGTTCCAAGTTTATTAAAGTTTCATGTAAAATG
TATTCCTGCAGACTTATTACGCCATGTTTTTATTATCAAAACCCTGAGTT
GAAAATCGGTGAATGAAAAAAGTACGTACTCACCAGGGGGTATAGCTATT
TGCATCTGCTTGCCTATCGGGGGAGGGGTATATATATTTTAGTGGGTACG
TACTATATGGACGGCGCCTAAGTAACAACAAAGTTCTATTTGAAACACTA
ATTTTTTAGCATAAAAGAACCACTTTATTCTGTGCTATTTGCCCAAATTA
GTTTTTGCCAAAATTAAAAATTGGATTTCTCTTCAAAACCACATTTATAA
AAAATTCTATTTTATTTAGCTCCTTGCCNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNTCGAAAAATATCAAGATTCTTGATATTTTCTCTTCTAAAGTACC
AGGGCCCTAAACGATTCCTCCAATTATACGGTACTGGCCTCTTTAAGTCG
CAGAATCGTTTCGGCCCTGGCTCGCGAGGGTGGTGTGTTATTCCTGTTTT
CTTAAACAGAGTAATACATAACTAAAGCAAAAATCGTCTTTGCGTGTATT
GCTTACTTTAAGGTATATCTTTAAGGTTAAATTTTTTTTCTTAGAATCTT
ATTTAGTTCCTGATATATTAATCGCCTCATTATATTTTAATTTGCAATTT
AGTAGAAAAAAGAGAAAATTGTAGCAACTTTTCGGCTTTTTTGATGTTTC
ATTGAATAACTTGGGAATTGACCAATTAGAAAAATAATCCTGAGAACTTT
TTTTAGACCAACCTTCTCTGAATCATATAAAAAATAATCATCTCGATAGC
TCAAAGCTATGGGCGACTTTAGGTATTTTGAATGTAACTAGGTCTTTTAA
TAATTACTCTTGTTCAGCATACTAAATAAGATTTTAATGAACATTTAGGG
AATTCTATGGGCTATCAGAAAATGCCTAGTACATCAGGATGCCTGGTGTC
TAGTGCAGTCGGCTCCAAAGGAGTCTAAGGTGTTTACACCTTTGTTGATT
CATGTTTTGTTTTCTTCTCCTGTCAGTCTACCTAGAGTTTGTTGTCATCT
TGTACAGGCCGCCGGGGTAATGTCGCCTGACTGTCTTAAATGATAGTCCA
AAGCCAGGATAAAGACAGAGGGACCCAGAAAGGACTAATTACCCTTTCAT
TGTAACATCGTCTCTCTAAGAGGAAAAAGAATTCGGCCACTCTTTGTTGT
TTGAAGTTCTTACAGGAGAAAACATTTTAATTTTTCATACTATATATATT
ATATATATGCATATTTTTCATACTATATATAATATAGTGAAGATATGTAA
TATCTGTCATTTTAGAAAAAGAAAAGTATTGATATATAAATAACTCAAAC
TGATAAAAACGAAAAAAAAGTTAAGAATATTTTTGTTAATTGTGTATATT
TACGATTTTTTTGTTATTTTTAATTTTTTAATAATTCCGAAACAGAGGGT
AATTTAGCAAAAAGTTAAAGGGAATTTAAATAGTGGTATGTGAAAGAAAA
ACCTAATCCAAATGAAGATAGAAGAAAAGTAATAGTGGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATTCTTTAGGGTAAATCTGTTTGT
AGCAATTATGAAACTCATCTCTGTCATTTAAGGCACACAAATCATCAATA
AATCTACCTACAGAGTGGAAGTTATTGGCACTAGGCGAACTAGCAGAAAT
GAGACCTTTGACATACTCAGATTCAAAATGGTACAAAAACAGATTTGCCC
AAAAAGGAGCAATGCACTGTTTAAGAATAGAATTGCCAACTTTGAAAAAG
CAATTTTTTATCAGAAAGGACACACACTCAGACAGTGAAGTATATGCATA
TGCATTTTTGCTTTTGAGATACTTCCGAAGAATACACCATTGTCCCATTT
CTTTTTTCTGCTCCATCAGAATTATGTACAAATAGTTTAGATCTTTTGTC
ATCATTTGATATCACATACCTGGTTTCCATTTTATGAATATTCATCCTGA
GCATGTTGTGTTGTTGTGTCCTCTTGTTGGTATTGTTTCGTCTCTTTTTG
TTTGTTACATTTTTTGAATAGTTGAAGGTTCAATACTTCTTTGACTATAT
ATATCGGTATATTTCTCGTATCAGCCTATTCACCTATTGGAGTGAATATT
TTAATAAACTGGCTATCATTAAGAGTAGAAAGCGTAACTCGGACGTTCTT
ATCATCGGATGCGATTGCAACTCAAGTTTGGGAACTTCTTATCGAGACAG
TGAATCTATGTATAAAAACTCAATTGGGAAGTTCGGTTTAACACACAGAA
ATCTCTCGGGAATACGTTTCATGACCTTCTTAGAATCTCGTAACCTTCTT
GCGTTATCTACCTACTACCGTAAGAAATCATATACAACATGGACCAACCC
GCGTTCGAAGCTTCCTCATCAAATAGACCATGTGTTAATTCAAAAAGACA
GTTCAAAACGTTTTACAGACTGTGGAGTTTTTACACCTCTTGTCGATAGT
GACCACAAAGCAGTCATTTGCAAAATAGGATTGATTTCACGCTTTAAAAT
CCAGTCATCCATCCGGCAAAGTATGATCCGACTTAATAACAACTCGCTTC
TCGATCAACAGATTGCTAAACACTTTGCTCAGACTGTAGTACAGAATTAC
GACAACACAGCTGATGGTCCCACCTACTGTAAATTTGCCTCAGCTATTGA
AAAAACTGCTTTTGAGAATCTTCCCAAATCATCTCGTCCACAGCCAGACT
GGTTTGAAGCTGATGAGGAGAACCTTTTCAGTTTGATTGACAAGCGTAAC
CGTCTCTTGAAAGCACACATCAATCGTTCTACCCGATCGTCATCACAAAA
ACTCCGTACTGCTAGAAAAGAGTTGACTTAAGCAATCTCACGAGAAAAGG
AGAACTGGATCTTACTGAAACTTAACTTTTTGAATTCGACAGCTGCGTCT
GTTAAAGGAACTAAACTATGCTGGGATTCAATAAAATCACTTAAGAACGG
TTTCCAGAAACCCGCCCCAGTCCAAGAGAAAATTATGACAAAACCGAACG
GAACAAAATGTACAACATCTGAAGAAAATGCCGAAGTATTTAAAAATCAC
TTCGAAAAATTGTACAACAATCAAGCTGCCTTCAATCCTGAAGTATTAAC
GTTTCTCGACCAGTGCCCTATATTGACGCAATGCGAGCAACGTCCAACAG
ATATCGATATCAAAAAAGCTTTACATCGTCTCAAAAACAAAGCCCCTGGT
GACTCTGGAATCACACCACTCATGCTAAAATTTTGTATCCACAACCAGCA
ATGTTTCGTTTTACTTCGCGACATCATTCTTGAGGTTTGGGACAATGAAT
CTCCACCCGAATCCTGGGATACCGGTCTGCTGAAAATTTTGCCAAAAAAA
AGGAGACCTTAGTCTACCCGGCAACTATCGTGGCATCATGCTTTTGGAAG
TTGCTTACAAAATCCTTGCCATACTTATCCATGATCGTTTACCGCCACTT
GTTGAATGAATATCTAGACCATGAAGCACAATGTGGCTTCCGCTCAGGAA
GGGGTTGTTTAGACTCTATTTTTGCTGTGAATATGGCTATGAAAAAGCGT
AGAGAACATAGTAAAGAAACATTGATTTTGTTCCTCGACTTAGTAATTCG
ACTGATAAAATCAGTTCATGATAATTTCAAAGTAGATTTTGAAATAGAAA
ATTGCAAGCATTCAATCAACTGCACCATCGGAGTTAAACAAGGGGACATT
CTTGGGCCTGTACTCTTCGTTGTTTACATAGCGGCTATAATGATCACCTG
GCGTAAACTGCACGATCGACCTCTTTGTATGTTCAGAACCAAGAAGGATT
TCTGTACGACAGGGAGACGAGTTACTGCCTCCGGAATCGATTTCGACTTC
CCTGACTCAAAGTACGCAGATGATACAGCCGTGTTGTTCGAATCCCGCAT
CGATCTCGTCACCTTCATTCCTCTGCTGCTTGACCATTTCAATCGCTTCG
GAATGGAAGTTCATGTTAGTGATATATCTTTACCCAATAACCATCAAAAA
CTGAAATATTGTTTGTTTCTGCTTCGGTCAAATCGTATCACGATTCTAAT
ACGTTTGACAATACGAATCTAACATCAATCGACTTGGGAGATGGGAAATT
TATACCCGTAACCGACCGTTTTTGCTATCTTGGTAGAATCATGTCACGCG
ATTGTACAGACAATCTTGATATTACAAACCGTATCAAAAGAGCTAGCAAT
GCTTTTGGCGCTCTAAGAAAATCGATTTTCTCCAATGCAAATGTCTCCAA
TAAAGTCAAGGCATCTGTTTACGAAAGCTTAGTGCTTCCGATTGCTCTTT
ACGGATCAGAATCATGGTCTCTTACAGAGAAATTATTCAATCTTTTACGT
ATGTTCCATCGTAATTGTCTCAGAGCAATGTGTAGAGTTAATCTGTTACA
TGTCAGGCGATATAGAATCTCAAATGAGAGTTGTTGAATCGTATTGGCTT
GTTGTCTGTTGATAGTTACATCACGAAAAGGCAGCTTTCATGGGCAGGGC
ATGTTGCTAGAATGAATTTTGATCGTCTTCCACAGAAAATATTATCGTCA
TGGGTAAGGTGTAACCGCCCAAGTGGTTCACCTGAATTTACTTATGGCCG
TGGTTTGAAAAAGTGTATGAATAAGGCTAATGTGCCTGTAATTAATTGGT
TTGATTTGGCGCAAGATAGAATTGGCTGGAAAAGANTGCCTGTAATTAAT
TGGTTTTATTTGGCACAAGATAGAATTGACTGGAATAGAATGGTGAATGG
TATTGTTGTAATATGATTTTATCTTGGTTGTTTTACTAATCTAATATTTA
TTATGCTACTAGTACTTTTCTTCCTTTGGCTAGCGCTATATATGATTTCC
CAGCGCTATGATTTCCAAATTTAAATTCCCGCCAAGAAAATCTTTTAGCT
GATTCGCGAAAATCGATTCCCACGAGACACAGTTTTCAGATCTTAGAGGT
GACTTTTTGGTTATTAGAACATAAAAACATGCTTTTAGCTTAGTGTTTTT
GTCTGGGAAAATCAAATTTCGCGAAAATTAATTCCCGCGAAATGAATTAG
TCTTGCTGATTTGGGAAATTAAATTCCATCAAAACACGCGAAAATTCGCG
AATGACCTGATTCGCGAAATTTTTTAGACGCGAAATTTTCTGACATTAAA
GTATTTGAATACTTGGTAATTTTTCTCTTGGTTTCACTATTTAGCCTTCG
AACGAATCGTTAATGAACCTGACAGAAATATCCTCATGGTTAAAATAGGA
GCAATTGAGGTGAAAGACGTCCCTTGGTAAAGGGAAACTTAAGGACAATT
TTATACAAGGCTTCATTCCGCATTTACTGAGCATTTATGATGTAAGTTTT
TGATATCTACTCATAAATATTTAGTAATGATTGAATCCAATGTTGCCAGT
ACTGTTGTCATAAGCTCCAAAGCCACGATCCAGTATACATAGAACAGTAT
ACATTTCGTATTCACAGGGCGAAAGTAAAGTTGGTTCAATTGATTGGACC
GTGTTGGGTCAAGCCTTGTCGTTTCCATCCACCTATGAATTGCCGGATAG
TGTCAAGGTACGTTNGACCGTGTTGGGTCAAGCCTTTTCGTTTCCATCCA
CCTATGAATTGCCGGATAGTGTCAAGGTACGTTGACTTTTAAAAGTAATT
CCTCAACTTCCTCAATTCCTCAAAATTTTATGTTCTCAATTGCAAAGGGA
TTGTTAATGGATTCTCTCTTACTGATGTAAACCCACCCATATACAAAAGG
TTGATTGATTTACATTATGAAAATATGTTTTTATGTGAAAATAGGAATTA
ATTAATTAATTAAAACAAAATTATATTTTCTACCATAGCTGAAGGGGGGT
AGCTTTTTTATAGGACACTTTGTGTCAAAAGAATGCAAAACGGAGCAGCT
TCTAATAAATAATTTTCATCCATATATTTTCAGAATGCTCTTCGTGAAAA
AGAAACTGTCTTCGGCATCTACAACACAAACGATCATTGGAATCTATTAG
TAAGAATGAGATAAAACTAAAATTTATGGTGATGAAACTTTGGAGCTAAA
TGTTAACAATTTGTTCCAATTAGAAGTTATTCTTTCAAAATCTCTATCTT
TATCTTTGTAGCTTATATTTCCAAAAAAGCAAAAGCAGCTTTGGTTGGCA
AACCCAACCAGTGAAGGAACAATGGAAACAGAAAATGTCGTCAGGACATG
GGAGTAGGTTTCGTTTGTTAACCCTTCGTGCATCTTCTTATTTTTTATAT
GCGGAGCATCTTGAGGGGCATGTTAGCCCCCCCCCCCCCCGGGCTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGCCCCCCCCCCCCTCGGATCTCAGGATTGACAA
GTGCTATGAACTTGAAATTTTCACCAATGACAGATATTGACAAAAGACGA
TTTACAAATTTTCAGGTCGGCCCCCTGTTTACTTGGTATTTTACAGACCA
GAATGTTAAGTTAGTGCGATTAATGCGATTGCATCCTTTGGCTGAAAAGA
TTACGTCATAAAAAGTAGCGCGCACATGAAAAGAAGTTGAATGCTTTTCA
ACCGTTGCGTCAAGTTGTGCCATTGGAAAAGCTTCATTTTACTTTTGACC
AATAGCGTGGAAGCTTTTGTTGAAAAGAAGCGATCGTAGAGCGCGCAAAT
GAAGAAAATCTTTGATAGGAGTTATTTTGAAAATTGTACCCTGAGTACTA
CTAAAAACAAAACCGTTTCACTGTAAAGATTGAGACTTACTTATTATTTG
CTACGTGTTGGTAATAGAGAGTTACTTTTTCTTCAGATCGGTAATGGCTT
CAAACTTTAACGAATACACTTCTTGGACAATGTATTCACAGCAACATGCG
GTTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00063611-exon-scaffold_396-1575043694:67526..67672 | TCONS_00063611-exon-scaffold_396-1575043694:67526..67672 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1575043694:55882..56028 | TCONS_00063611-exon-scaffold_396-1575043694:55882..56028 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1575043694:55597..55755 | TCONS_00063611-exon-scaffold_396-1575043694:55597..55755 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1575043694:55224..55289 | TCONS_00063611-exon-scaffold_396-1575043694:55224..55289 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1575043694:55020..55111 | TCONS_00063611-exon-scaffold_396-1575043694:55020..55111 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1575043694:54287..54386 | TCONS_00063611-exon-scaffold_396-1575043694:54287..54386 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1510915933:67526..67672 | TCONS_00063611-exon-scaffold_396-1510915933:67526..67672 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1510915933:55882..56028 | TCONS_00063611-exon-scaffold_396-1510915933:55882..56028 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1510915933:55597..55755 | TCONS_00063611-exon-scaffold_396-1510915933:55597..55755 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1510915933:55224..55289 | TCONS_00063611-exon-scaffold_396-1510915933:55224..55289 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1510915933:55020..55111 | TCONS_00063611-exon-scaffold_396-1510915933:55020..55111 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1510915933:54287..54386 | TCONS_00063611-exon-scaffold_396-1510915933:54287..54386 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1491911889:67526..67672 | TCONS_00063611-exon-scaffold_396-1491911889:67526..67672 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1491911889:55882..56028 | TCONS_00063611-exon-scaffold_396-1491911889:55882..56028 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1491911889:55597..55755 | TCONS_00063611-exon-scaffold_396-1491911889:55597..55755 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1491911889:55224..55289 | TCONS_00063611-exon-scaffold_396-1491911889:55224..55289 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1491911889:55020..55111 | TCONS_00063611-exon-scaffold_396-1491911889:55020..55111 | Clytia hemisphaerica | exon |
TCONS_00063611-exon-scaffold_396-1491911889:54287..54386 | TCONS_00063611-exon-scaffold_396-1491911889:54287..54386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_396 | supercontig | scaffold_396:54287..67672 - |
Blast
The following BLAST results are available for this feature:
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