TCONS_00063625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063625
Unique NameTCONS_00063625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063625 ID=TCONS_00063625|Name=TCONS_00063625|organism=Clytia hemisphaerica|type=transcript|length=624bp
cGTTGCTCCTACTAGTGCAGCAGGTATTCTTTTACCTGATGGCGGAACTA
TTCACTCATGTGTTAATATTCCTAGAAAAACTAAAGGAATAACTTTTGAC
AGTTGTCCCATGAATTCTGATCAaatcaaacatttaaaaagcCTGGCACT
CGACAATGATGGCAAAAAACTCTCTCTCATGTGTCTAAATGCTGATGAAA
GAGGAATGGTTGGACAATATGTTAGGGGTTGGTTTTATCAACGGTTTTCC
CAACTTTCAATAAATCTATTAGGGAAAGTAATTAAAGCATACAGTTTGGT
TGCattccaacttttaatttttttggtgaCATTTTTCAATTGAGAGCCAT
TGGGGAACGTAATCTGTATGATATTGTGTTGGATTCAACAGACCCTATTG
ATTCTGCTGGTGGTTTTGCCTACAAAGATTTCCAAGATGTATTCATTCTA
GAAGAAATAATGCGGCAACAGCCCAATCAAGCAGCCTTGTTAAAACGCTT
AGACAACCTGCGAACTGGCAATGTAACCAGAAAAGACTGGGAGGAGATAA
ATCAACGTTGTTATGATAATTTAACCACTgatgaacaaagaaattttaac
gACGAAACTTCGAATGTTATCTGT
Run BLAST on NCBI

transcript from alignment at scaffold_396:77253..77876

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063625 ID=TCONS_00063625|Name=TCONS_00063625|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at scaffold_396:77253..77876 (Clytia hemisphaerica)
ACAGATAACATTCGAAGTTTCGTcgttaaaatttctttgttcatcAGTGG
TTAAATTATCATAACAACGTTGATTTATCTCCTCCCAGTCTTTTCTGGTT
ACATTGCCAGTTCGCAGGTTGTCTAAGCGTTTTAACAAGGCTGCTTGATT
GGGCTGTTGCCGCATTATTTCTTCTAGAATGAATACATCTTGGAAATCTT
TGTAGGCAAAACCACCAGCAGAATCAATAGGGTCTGTTGAATCCAACACA
ATATCATACAGATTACGTTCCCCAATGGCTCTCAATTGAAAAATGtcacc
aaaaaaattaaaagttggaatGCAACCAAACTGTATGCTTTAATTACTTT
CCCTAATAGATTTATTGAAAGTTGGGAAAACCGTTGATAAAACCAACCCC
TAACATATTGTCCAACCATTCCTCTTTCATCAGCATTTAGACACATGAGA
GAGAGTTTTTTGCCATCATTGTCGAGTGCCAGgctttttaaatgtttgat
tTGATCAGAATTCATGGGACAACTGTCAAAAGTTATTCCTTTAGTTTTTC
TAGGAATATTAACACATGAGTGAATAGTTCCGCCATCAGGTAAAAGAATA
CCTGCTGCACTAGTAGGAGCAACg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039881XLOC_039881Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063625-exon-scaffold_396-1491911889:77253..77876TCONS_00063625-exon-scaffold_396-1491911889:77253..77876Clytia hemisphaericaexon
TCONS_00063625-exon-scaffold_396-1510915933:77253..77876TCONS_00063625-exon-scaffold_396-1510915933:77253..77876Clytia hemisphaericaexon
TCONS_00063625-exon-scaffold_396-1575043694:77253..77876TCONS_00063625-exon-scaffold_396-1575043694:77253..77876Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_396supercontigscaffold_396:77253..77876 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0854885	0.287999	0.527593	0.425645	0	0.0911006	0.109909	0	0.4072	0.35693	0	0.170805	0.170567	0	0.0485432	0	0	0	0	0.190191	0	0	0.196039	0	0.458926	0.335636	0.261608	0.375307	0.0948856	0.193347
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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