TCONS_00063652 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00063652
Unique Name	TCONS_00063652
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1132

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_397:59062..63529-

transcript sequence

>TCONS_00063652 ID=TCONS_00063652|Name=TCONS_00063652|organism=Clytia hemisphaerica|type=transcript|length=1132bp
CTGGATCAAGAACTCACACACTGACTGgtCATGACAGCCCTGTTACTGCA
GTGAAATGGTCACCAAGAAAAGAACATGTCTTATACAGCGGAAGTACAAA
TGGAAAAATCAATATCTGGGATGTTCGAAAAACAAAGAATCTACTCAAAA
GCTTGCAGACTACAgAATCCAAGAAGAATGGAGTAGATAGTATCAGTTTC
ACGCCAAATGGTTTTGGATTGATTTCTCTGAATTCTGATGGAACACTTTC
TCTTTGGAAATGTCATAATGGAAAACAAGCAAAGGTCAACTATGCAGCTT
CAAGTGCCAACAATGACCGAGCAGGGTCAACTTGTGTTTCGAACAATAAT
CAGGTTGTGTTTGCCTCCAATGATCGAAATGTCCAAGCATATGATATTTA
TACTGGTGAACACATGAAAACGTTCAATGGTCATTTCAAAGCAGTAACTG
GTGTTTGTTATAACGATCCATTTGAGGAATTGATTACTTGTGGCTTGGAT
TCAAAGGTCCTGATTTGGGATAATCGTAACTACGACAAGGTGAGATTGCA
GAATGAATATCACCAAGATGATTGGGATGCTGTCGATGATTGATGACAGA
GATTGTGGTCAACAAGCTCACGTCGTGTATAATGACTTGACGTGACTGGA
CGTACGATACTTGACTGTACATGACGAGACTACGTAACCCTACACTACGT
AACACTTACTACGCTTAAGTTAACTACTTTAAATGACGCAACACAACATT
TATGGCACTGGAAAAATATCATGCTCGCAGAGTCCAAGGGACTTTTTCCA
ACACTCAAGAAACTTTTCCATTCACAGGGGAATAGAATCAAAGTTTTTCA
CTTTGGATCGAATTATGAGAGAACAGAATAGACCAGaacaattcctttgt
tttcaaaGATTATAAATGCATTTTCCACCTAGTGTGGCTCTTCCGTGGAT
actcaaacaaaaaaaatcgaacTGTTTCAATTTATATCATACCCTGAGAA
CTTGAGATTTTCCAAGTATCTTTGTATTGAAATTGGTTTTGTTTTCGTTT
GTCCGGTTGTATTCGTTTTGTAAACTATTGTAGAATAAAGTAACTTGAGG
TGTTTTCGAAATCAATGTTACTCaactttttt

Run BLAST on NCBI

transcript from alignment at scaffold_397:59062..63529-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00063652 ID=TCONS_00063652|Name=TCONS_00063652|organism=Clytia hemisphaerica|type=transcript|length=4468bp|location=Sequence derived from alignment at scaffold_397:59062..63529- (Clytia hemisphaerica)
CTGGATCAAGAACTCACACACTGACTGGTAGCAAAAAAAGAAATCATTTA
ATTCTTGCATATTATATTCTTGGTCTCAATTAAAGTTTAAAAACTCTAGC
ATTGCTAAAATGATGTCAATGGTAATGAGAAATTTTTCATCAAAAGTCCC
TTATTTGATAAAAAACTCAAAAATTTAATTAGCAATCAAAATTATTTTTT
AGGTCATGACAGCCCTGTTACTGCAGTGAAATGGTCACCAAGAAAAGAAC
ATGTCTTATACAGCGGAAGGTTTTACTTTAAAGCTTTTATGAAGATTTTA
CCAAGTTCATATAAAAGGCCCTTTTTACAATTAATTATATTCAAGCTTTG
TTTATTTGATGGTTGTTTAGGACGAAAAATTACAATGAATGGATATCAAT
CAAGCATGGTTCTTTCAGGATTCAAGACTATTAAATGCAATCAAATTGCA
GTCTTGTGACTAAGCAAACTTGACTGTAGCCTTTTTATTGCAACCAGTCC
AATCCAATGAGTTCCATATTGAGTTTATATTTCATCTGAATGTTCCAATC
ATCGCATACTTGCATTTCTTTTTAGTACAAATGGAAAAATCAATATCTGG
GATGTTCGAAAAACAAAGAATCTACTCAAAAGCTTGCAGACTACAGGTTA
AAAATGAATTAAATAATTGTTTGCCGAGTTTGAAAGATACACCCTCTGTC
TATTGAAAAAAACAAAGATCATTCCAACAAGTGCAATGAGATCCTGTAAA
ACACTATTTCGTACATTGATAAATCAAGACATAAATAGACTTTGTGATTG
ATGAACTTATGGGAATTCTCCTTGCTTATATGAATAACATTTTTTTTCTG
GATTAATTTAGAATCCAAGAAGAATGGAGTAGATAGTATCAGTTTCACGC
CAAATGGTTTTGGATTGATTTCTCTGAATTCTGATGGAACACTTTCTCTT
TGGAAATGTCATAATGGAAAACAAGCAAAGGTGGTGTCATTATACCTTTT
TTTACAAAGGCTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTAGCAGAGTG
TAACTTAATGTTCTTGGTGTGCAATACTGTGAGTTCTTCATACTTCTTCT
TTCTGGTATCCGTCTGGCTGCCTTTCTATAAAAGGGTAAATGGCATCAAT
GATATACAACACTGTATCGAGATATTATGATTTTTCAATAGCTACAGTCA
ACTCTCACTCTCTCTAATTCGAACTTCTATTATTCGAATCTTTCTAAAAT
TCGAACTAAAATTTTTGGTATTTTAAAGATCAAATTAGAGGGAGTCTAAT
AATACATTTAATGAAGTTAAATTATTATTAGTTAATTATTATTTTCAAGG
TCAACTATGCAGCTTCAAGTGCCAACAATGACCGAGCAGGGTCAACTTGT
GTTTCGAACAATAATCAGGTTGTGTTTGCCTCCAATGATCGAAATGTCCA
AGCATATGATATTTATACTGGTGAACACATGAAAACGTTCAATGGTCATT
TCAAAGCAGTAACTGGTGTTTGTTATAACGATCCATTTGAGGTCAGTTTT
TGGACCTACCCTGGGGTGGAGGTCCTATAAATTCACCTCTGTCCGTCCGT
TCGTTACCAGCTTTTCTCGAGATTGAATCATAGGAATCATTTGATTTTTG
GTACAAAGGTGCAAAATGCTGGTGGCCAAAATGTGACGGAGCCCGATTTT
CGGAAAAAAAAATTTTTGGGCAAATTTGGGCCAAAAAACGGCTAAAAAAG
GGTTAAATTGGATCATTAACTTTTTCCGATTTTTTGCATGGAAGTAGGGT
ACCATTATAGGTAAAAGATAGCTCAAGCAGATTTTTGCAAAAAAAAATTA
TTTGGCTTAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCA
TACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTATGAGATAGATGT
TTTTTTTTGCTCACGAGGGCTCACTTTTGAAGCATATGTGTGTTTAGACA
TGAAATTTTGGTTTCTTGGCGTGTTTTTATAGAAAAACTGGCCAAATTCG
ACATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGCTTTTCTCG
AGATTGGCTCTTTCATTCTTTATAATTTTTTGCATAAAGATGCATAACTA
TGAATCCTCGAATGTGACGGAGCCCGATTTTCGAAAAAAAATGTTTTTTG
GCAAATTTGGGCCAAAAAACGACTAAAAAAGGGTTTTTGGACTTTGTGAA
ATATTGGATCATTGTTTTTTTCTGATTTTTTGCATGAAAGTAGGTAAAAG
ATGGGTCAAGCAGACTTTTGTAAAAAAACTTTTCAGCTCAAAAAACGCAT
GTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGCC
AAATTACTCAATTTTTTGATGAGATAGATGTCTTTTTATGCTCACGAAGT
CTTGAATATGAAAGAGTATTTCAAGAGCATGAAATTTTGGTTTCTAAACG
TTTTTCTTATAAGAAACAAACGACTAATTTTAATAGATCGTCACTATTTG
TGTTCTGAAGGATTGTTTAACGTTCATGCTCACGTAGATATCAATTATAT
ATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTCT
TGATTTTCAATGGAAAGTCTTCCAGAGAATTCGCACCATGTAATTTTTAT
AAGATCTATTCAAAATACTTTCATTTCTCAACGAATTTCTTTCCACCACA
ATTTTCATACTATGTTTTTTTATTTCCTTCAGGAATTGATTACTTGTGGC
TTGGATTCAAAGGTCCTGATTTGGGATAATCGTAACTACGACAAGGTTTG
TCAATCATCACCAGGAACTTCGTTTATATCCTTGATTGTATTTTCAAAGG
CTCTGGTCCTATGATGGCAGCAAAACTATCCCATTGCTGTTTGAATCAAA
AGTTTTCACAGCTCTTGTAATTTGTTTATTCAGAGGAATGTAAAGAGATG
GAAAAACAGCTTTTCTGATTACTCAAAGTTCAACGATCACTTGAAAATTC
TATAGGAAAAACGTTGATAAGGTTATTAAATGAAAATCCAGAAAAGACGG
CTTCTACATAATTTGACGATAAAAATGAAATTTTTTTTTTCCTTTTTTGC
CGATTACTAGTTCAATTTTTAAGAATAAGGGACAATTTTTTACCAATGTA
AAAGAAATTCTTAACGCAATGATATTAAATTAATTCTTGTAAAACTGTCA
GAAATCGAGTAAAATCAAGATAAAACCTATTAACTCAAAATTTAGGTTAG
CTTTTCCTCTTTCCAAAAGCGAAAAGTCTAGCTTTATAACATTTTTAGTT
TTCTGACAATCTCAATCCAAACTTGTACACTTACACGTATTGTAAAAGTA
TTTTTAAAAATCTTTTTCGTGTAGGTGAGATTGCAGAATGAATATCACCA
AGATGATTGGGATGCTGTCGATGATTGATGACAGAGATTGTGGTCAACAA
GCTCACGTCGTGTGTAAGTGAATGTCTTTTACTCTATTGACTTCATGATT
TTAAAACAAAAGTCCTTTCCAAGAGTAATCCATAGCCCAGGGAATAGGCG
CGGGAAGAGGCAGATCAGATTGCCCCCCTTGTTTGCTGCCGCCACCGCCG
TTAACTTCTGACAAAATATCAATAAAATCAAAAACACAATGTCGAATCTG
ATTTCACTTACCTTTGGGAATAACAAAGCTCTAGTTTGATATTCATTCTG
AGATGGGCTGCACTTATAATCAGTCAAATTTGCCATGTCTGGCAGGAAAA
CACTCCAGCCTCTGTTTTCTTTCGTTTTTCTGCGATTCAACCCTAGCAGA
GTCTCAATTCATTGACAGATTTTTTTTAATCCGAAGCACTTGTTTGATAT
TTTTTTCTATGAGGTTGCAATTCATGAAGGATTCTTTTCTTTGAGATTCC
AATTATCTATCTAGATAATGACTTGACGTGACTGGACGTACGATACTTGA
CTGTACATGACGAGACTACGTAACCCTACACTACGTAACACTTACTACGC
TTAAGTTAACTACTTTAAATGACGCAACACAACATTTATGGCACTGGAAA
AATATCATGCTCGCAGAGTCCAAGGGACTTTTTCCAACACTCAAGAAACT
TTTCCATTCACAGGGGAATAGAATCAAAGTTTTTCACTTTGGATCGAATT
ATGAGAGAACAGAATAGACCAGAACAATTCCTTTGTTTTCAAAGATTATA
AATGCATTTTCCACCTAGTGTGGCTCTTCCGTGGATACTCAAACAAAAAA
AATCGAACTGTTTCAATTTATATCATACCCTGAGAACTTGAGATTTTCCA
AGTATCTTTGTATTGAAATTGGTTTTGTTTTCGTTTGTCCGGTTGTATTC
GTTTTGTAAACTATTGTAGAATAAAGTAACTTGAGGTGTTTTCGAAATCA
ATGTTACTCAACTTTTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039895	XLOC_039895	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_397	supercontig	scaffold_397:59062..63529 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	1.77464e-08	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00063652 vs. Swiss-Prot (Human)
Match: ERCC8 (DNA excision repair protein ERCC-8 OS=Homo sapiens GN=ERCC8 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.595e-25
Identity = 59/199 (29.65%), Postives = 96/199 (48.24%), Query Frame = 3

Query:    3 GSRTHTLTGHDSPVTAVKWSPRKEHVLYSGSTNGKINIWDVRKTKNLLKSLQTTESKK-----------NG-VDSISFTPNGFGLISLNSDGTLSLWKCHNGKQAKVNYAASSANNDRAGSTCVS--NNNQVVFASNDRNVQAYDIYTGEHMKTFNGHFKAVTGVCYNDPFEELITCGLDSKVLIWDNRNYDKVRLQNE 557
            GS +H L GH   + AV WSPR +++L + S + ++ +WDVR+    L +L     KK           NG V+ + FT +G  L+++ +D  + LW   NG+   VNY     N+ +     VS   +++ VF      +  Y +Y+GE +    GH+K V    +   F+EL +   D  +L W    Y+ V   +E
Sbjct:  176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374

The following BLAST results are available for this feature:

BLAST of TCONS_00063652 vs. Swiss-Prot (Human)

BLAST of TCONS_00063652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ERCC8	3.595e-25	29.65	DNA excision repair protein ERCC-8 OS=Homo sapiens...	[more]

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TCONS_00063652 (transcript) - C. hemisphaerica