TCONS_00063669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063669
Unique NameTCONS_00063669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063669 ID=TCONS_00063669|Name=TCONS_00063669|organism=Clytia hemisphaerica|type=transcript|length=1878bp
GAAGGAAGGGAGTTCCTACCGTGGTTCGGAGACTCCATTTTAAAATTCCA
TTTGATAATCATTGAATAAGCCTACTTGTTGACGTTGGATCTCTTATACA
ACATGGCTAATCCGATTCAACATAATGAGATTAATTGCAATCAACAAGAG
AATGGAAATTTATGTGAAGCTGCTGCATTTGGAGATATCAAAACCATCAA
ATACTTGGTTAAGAAACAAGGCATTGATGTCAATACGGCTGAAGAAATCT
CTGGTAGTACTCCACTGATTTGGTCAATCATCAATTCTAAAGTCAAAGTG
GCGAAACTTTTGTTGAGGATGGGAGCTGATATCCATTCTGGATCTTTCAA
CGAAAAGACGGCTTTTGATTGGGCAGAAGCTAACAATGACTCAAAAATGT
TAAGCTTATTACAGAAAAATGAAGCGTCGAAAACAACCTTTAAACTCTTA
CCAAACATTCTCCGCAAACTTGGCATTGGTCATGGTGGTCAAAAGGCATT
GAAAAGTCCAACTGATTCAATTCACACGGCAGCCGGCCGACGAAACAATT
ACACGTTGAAAACACTGTTGAAGGAAAACTCTGAAGATATCAATACTAAA
AACACTAAAGGTGATTCTCCCCTACATACAGCCATCAAGAGCCATCGTAT
AAGCACAACAAAGTTTTTACTTGTTAGTGGCGCTGATATGAGTGTTCGAG
ACGAGGAAGGTTTTCTCCCTCTACATGTTGCTGttataaacaataaaaac
aaaaaatgtgaTGAGATCCTTAAAAATATGGTTATGAGGGGAGCTGATAT
AATGGTACGCGATGCGTCAGGAAGGAATGCGTTGGATATGGCATTTCTAA
ATGACGATTTGAGAAGTGTCAAAATCATTTGTAAATCTCTACCACCAAAT
ACAACACATCTGCTTGATGTGTTTGGCCACGCTATAGGCAACGACTCAGT
TGAGCTGATGCAATTATTATTAAAACGGTGGCCAAGAGGTGTCAAAGATG
AGGATGGGAACTCACTTTTACACATGGCAATCTTGAAAGGGAATTTTGAA
ATGGTGAGCGAAGTCGTCAACACTTTCGACGTTAGTACGACCAACAATAA
CGGTGACACACCGTTGCATTTGGCTGTCTCTAAAAGATTAAACGAAATTG
TATGTCTCTTACTTCACAATAACGCTGACGTCAACATGCAAAATAACCAA
GGTGAGACGCCTCTTCACACAGCCGTACAAAGTAATTTACTTATATTCAT
TTTACTGGTCGATAAATGTGATAACACGCTACAAAATCATGATGGAGATA
CTGTTTTTCATCTAGCAGCTCGACATGGGAAAACTGATTTTATCGATCTC
AtggttaaagaaaataaacctTCGAATGACCCATACTCTTCAAAccatga
cgtcagcaaaacgtcacaattcaaaaacattttgaatcaCCGAAACTGTA
CAGCTTTACATGAAGCTTGCTTTGGTAATCATTACAAAACTGTTGAAAAA
CTTTTAGATATAGATATTGAGAGTGATATTAAAAATTGTGAAGGAAAAAC
TGCTCTTGATATTGCAATATCAATGGATCATTTAAGTCTTGTATGTCTAT
TCAAAGGACAAAAACTCTGTGGAAATGGGCTAGCAACATTTTTATGTACT
GTATGCTATGAAATCCCAACCTCACCGAACTTCATTTACAAATGTCCGAA
CGGGCATATCTATTGTAGCGCGTGTGATACTAAGGATAAATTTTTACAAT
GTCCGCAATGTGGAATTCCTATTAGAAAGAAACTGCGGAATAAAGATGCT
GAAGAGAAGTTAGCAGTTATGTTCCCAAATGCTGCTGTGGAAGGGAGAGT
GGATTCCTTTGAATGCTTGTTCCAGTAT
Run BLAST on NCBI

protein sequence of TCONS_00063669-protein

>TCONS_00063669-protein ID=TCONS_00063669-protein|Name=TCONS_00063669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp
MANPIQHNEINCNQQENGNLCEAAAFGDIKTIKYLVKKQGIDVNTAEEIS
GSTPLIWSIINSKVKVAKLLLRMGADIHSGSFNEKTAFDWAEANNDSKML
SLLQKNEASKTTFKLLPNILRKLGIGHGGQKALKSPTDSIHTAAGRRNNY
TLKTLLKENSEDINTKNTKGDSPLHTAIKSHRISTTKFLLVSGADMSVRD
EEGFLPLHVAVINNKNKKCDEILKNMVMRGADIMVRDASGRNALDMAFLN
DDLRSVKIICKSLPPNTTHLLDVFGHAIGNDSVELMQLLLKRWPRGVKDE
DGNSLLHMAILKGNFEMVSEVVNTFDVSTTNNNGDTPLHLAVSKRLNEIV
CLLLHNNADVNMQNNQGETPLHTAVQSNLLIFILLVDKCDNTLQNHDGDT
VFHLAARHGKTDFIDLMVKENKPSNDPYSSNHDVSKTSQFKNILNHRNCT
ALHEACFGNHYKTVEKLLDIDIESDIKNCEGKTALDIAISMDHLSLVCLF
KGQKLCGNGLATFLCTVCYEIPTSPNFIYKCPNGHIYCSACDTKDKFLQC
PQCGIPIRKKLRNKDAEEKLAVMFPNAAVEGRVDSFECLFQY
Run BLAST on NCBI

transcript from alignment at scaffold_397:175777..177654

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063669 ID=TCONS_00063669|Name=TCONS_00063669|organism=Clytia hemisphaerica|type=transcript|length=1878bp|location=Sequence derived from alignment at scaffold_397:175777..177654 (Clytia hemisphaerica)
ATACTGGAACAAGCATTCAAAGGAATCCACTCTCCCTTCCACAGCAGCAT
TTGGGAACATAACTGCTAACTTCTCTTCAGCATCTTTATTCCGCAGTTTC
TTTCTAATAGGAATTCCACATTGCGGACATTGTAAAAATTTATCCTTAGT
ATCACACGCGCTACAATAGATATGCCCGTTCGGACATTTGTAAATGAAGT
TCGGTGAGGTTGGGATTTCATAGCATACAGTACATAAAAATGTTGCTAGC
CCATTTCCACAGAGTTTTTGTCCTTTGAATAGACATACAAGACTTAAATG
ATCCATTGATATTGCAATATCAAGAGCAGTTTTTCCTTCACAATTTTTAA
TATCACTCTCAATATCTATATCTAAAAGTTTTTCAACAGTTTTGTAATGA
TTACCAAAGCAAGCTTCATGTAAAGCTGTACAGTTTCGGtgattcaaaat
gtttttgaattgtgacgttttgctgacgtcatggTTTGAAGAGTATGGGT
CATTCGAaggtttattttctttaaccaTGAGATCGATAAAATCAGTTTTC
CCATGTCGAGCTGCTAGATGAAAAACAGTATCTCCATCATGATTTTGTAG
CGTGTTATCACATTTATCGACCAGTAAAATGAATATAAGTAAATTACTTT
GTACGGCTGTGTGAAGAGGCGTCTCACCTTGGTTATTTTGCATGTTGACG
TCAGCGTTATTGTGAAGTAAGAGACATACAATTTCGTTTAATCTTTTAGA
GACAGCCAAATGCAACGGTGTGTCACCGTTATTGTTGGTCGTACTAACGT
CGAAAGTGTTGACGACTTCGCTCACCATTTCAAAATTCCCTTTCAAGATT
GCCATGTGTAAAAGTGAGTTCCCATCCTCATCTTTGACACCTCTTGGCCA
CCGTTTTAATAATAATTGCATCAGCTCAACTGAGTCGTTGCCTATAGCGT
GGCCAAACACATCAAGCAGATGTGTTGTATTTGGTGGTAGAGATTTACAA
ATGATTTTGACACTTCTCAAATCGTCATTTAGAAATGCCATATCCAACGC
ATTCCTTCCTGACGCATCGCGTACCATTATATCAGCTCCCCTCATAACCA
TATTTTTAAGGATCTCAtcacattttttgtttttattgtttataaCAGCA
ACATGTAGAGGGAGAAAACCTTCCTCGTCTCGAACACTCATATCAGCGCC
ACTAACAAGTAAAAACTTTGTTGTGCTTATACGATGGCTCTTGATGGCTG
TATGTAGGGGAGAATCACCTTTAGTGTTTTTAGTATTGATATCTTCAGAG
TTTTCCTTCAACAGTGTTTTCAACGTGTAATTGTTTCGTCGGCCGGCTGC
CGTGTGAATTGAATCAGTTGGACTTTTCAATGCCTTTTGACCACCATGAC
CAATGCCAAGTTTGCGGAGAATGTTTGGTAAGAGTTTAAAGGTTGTTTTC
GACGCTTCATTTTTCTGTAATAAGCTTAACATTTTTGAGTCATTGTTAGC
TTCTGCCCAATCAAAAGCCGTCTTTTCGTTGAAAGATCCAGAATGGATAT
CAGCTCCCATCCTCAACAAAAGTTTCGCCACTTTGACTTTAGAATTGATG
ATTGACCAAATCAGTGGAGTACTACCAGAGATTTCTTCAGCCGTATTGAC
ATCAATGCCTTGTTTCTTAACCAAGTATTTGATGGTTTTGATATCTCCAA
ATGCAGCAGCTTCACATAAATTTCCATTCTCTTGTTGATTGCAATTAATC
TCATTATGTTGAATCGGATTAGCCATGTTGTATAAGAGATCCAACGTCAA
CAAGTAGGCTTATTCAATGATTATCAAATGGAATTTTAAAATGGAGTCTC
CGAACCACGGTAGGAACTCCCTTCCTTC

Coding sequence (CDS) from alignment at scaffold_397:175777..177654

>TCONS_00063669 ID=TCONS_00063669|Name=TCONS_00063669|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_397:175777..177654 (Clytia hemisphaerica)
ATACTGGAACAAGCATTCAAAGGAATCCACTCTCCCTTCCACAGCAGCAT
TTGGGAACATAACTGCTAACTTCTCTTCAGCATCTTTATTCCGCAGTTTC
TTTCTAATAGGAATTCCACATTGCGGACATTGTAAAAATTTATCCTTAGT
ATCACACGCGCTACAATAGATATGCCCGTTCGGACATTTGTAAATGAAGT
TCGGTGAGGTTGGGATTTCATAGCATACAGTACATAAAAATGTTGCTAGC
CCATTTCCACAGAGTTTTTGTCCTTTGAATAGACATACAAGACTTAAATG
ATCCATTGATATTGCAATATCAAGAGCAGTTTTTCCTTCACAATTTTTAA
TATCACTCTCAATATCTATATCTAAAAGTTTTTCAACAGTTTTGTAATGA
TTACCAAAGCAAGCTTCATGTAAAGCTGTACAGTTTCGGtgattcaaaat
gtttttgaattgtgacgttttgctgacgtcatggTTTGAAGAGTATGGGT
CATTCGAaggtttattttctttaaccaTGAGATCGATAAAATCAGTTTTC
CCATGTCGAGCTGCTAGATGAAAAACAGTATCTCCATCATGATTTTGTAG
CGTGTTATCACATTTATCGACCAGTAAAATGAATATAAGTAAATTACTTT
GTACGGCTGTGTGAAGAGGCGTCTCACCTTGGTTATTTTGCATGTTGACG
TCAGCGTTATTGTGAAGTAAGAGACATACAATTTCGTTTAATCTTTTAGA
GACAGCCAAATGCAACGGTGTGTCACCGTTATTGTTGGTCGTACTAACGT
CGAAAGTGTTGACGACTTCGCTCACCATTTCAAAATTCCCTTTCAAGATT
GCCATGTGTAAAAGTGAGTTCCCATCCTCATCTTTGACACCTCTTGGCCA
CCGTTTTAATAATAATTGCATCAGCTCAACTGAGTCGTTGCCTATAGCGT
GGCCAAACACATCAAGCAGATGTGTTGTATTTGGTGGTAGAGATTTACAA
ATGATTTTGACACTTCTCAAATCGTCATTTAGAAATGCCATATCCAACGC
ATTCCTTCCTGACGCATCGCGTACCATTATATCAGCTCCCCTCATAACCA
TATTTTTAAGGATCTCAtcacattttttgtttttattgtttataaCAGCA
ACATGTAGAGGGAGAAAACCTTCCTCGTCTCGAACACTCATATCAGCGCC
ACTAACAAGTAAAAACTTTGTTGTGCTTATACGATGGCTCTTGATGGCTG
TATGTAGGGGAGAATCACCTTTAGTGTTTTTAGTATTGATATCTTCAGAG
TTTTCCTTCAACAGTGTTTTCAACGTGTAATTGTTTCGTCGGCCGGCTGC
CGTGTGAATTGAATCAGTTGGACTTTTCAATGCCTTTTGACCACCATGAC
CAATGCCAAGTTTGCGGAGAATGTTTGGTAAGAGTTTAAAGGTTGTTTTC
GACGCTTCATTTTTCTGTAATAAGCTTAACATTTTTGAGTCATTGTTAGC
TTCTGCCCAATCAAAAGCCGTCTTTTCGTTGAAAGATCCAGAATGGATAT
CAGCTCCCATCCTCAACAAAAGTTTCGCCACTTTGACTTTAGAATTGATG
ATTGACCAAATCAGTGGAGTACTACCAGAGATTTCTTCAGCCGTATTGAC
ATCAATGCCTTGTTTCTTAACCAAGTATTTGATGGTTTTGATATCTCCAA
ATGCAGCAGCTTCACATAAATTTCCATTCTCTTGTTGATTGCAATTAATC
TCATTATGTTGAATCGGATTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039911XLOC_039911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063669-exon-scaffold_397-1491911889:175777..177654TCONS_00063669-exon-scaffold_397-1491911889:175777..177654Clytia hemisphaericaexon
TCONS_00063669-exon-scaffold_397-1510915933:175777..177654TCONS_00063669-exon-scaffold_397-1510915933:175777..177654Clytia hemisphaericaexon
TCONS_00063669-exon-scaffold_397-1575043694:175777..177654TCONS_00063669-exon-scaffold_397-1575043694:175777..177654Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063669-proteinTCONS_00063669-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:175777..177654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0212569	0.0207288	0	0	2.26462	1.17792	2.29564	1.94447	0.573209	1.70846	1.3137	2.56241	5.17425	3.96406	1.25532	0.31088	0.239362	0.147203	6.32703	7.63755	0.0205524	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00063669 vs. Swiss-Prot (Human)
Match: MIB1 (E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.080e-24
Identity = 98/372 (26.34%), Postives = 164/372 (44.09%), Query Frame = 1 
Query:  145 QENGNLCE----AAAFGDIKTIKYLVKKQGIDVNTAEEISGSTPLIWSIINSKVKVAKLLLRMGADIHSGSFNEKTAFDWAEANNDSKMLSLLQKNEASKTTFKLLPNILRKLGIGHGGQKALKSPTDSIHTAAGRRNNYTLKTLLKENSEDINTKNTKGDSPLHTAIKSHRISTTKFLLVSGADMSVRDEEGFLPLHVAVINNKNKKCDEILKNMVMRGADIMVRDASGRNALDMAFLNDDLRSVKIICKSLPPNTTHLLDVFGHAIGNDSVELMQLLLKRWPRGVKDEDGNSLLHMAILKGNFEMVSEVVNT--FDVSTTNNNGDTPLHLAVSKRLNEIVCLLLHNNADVNMQNNQGETPLHTAVQSNLL 1242
            QE+G+L E    AAA GD+  ++ L+K+  +DVN   + +G T +  +  N  V + KLLL+   D+              EA +                                      K    ++H AA       ++ +L   S D+N +N +  +PLH A+    +   K LL  G   S++D EG  PLH A+    +KK D+IL  ++  GAD+ + + +G NAL  A L  +  +++++   LP                          + W    K +DG + LH+A L  + E+   +V+    ++   N N  T LHLAV ++  +IV LL+   A +++Q+  G+TPLH A++ + L
Sbjct:  426 QESGDLNEELVKAAANGDVAKVEDLLKRPDVDVNG--QCAGHTAMQAASQNGHVDILKLLLKQNVDV--------------EAED--------------------------------------KDGDRAVHHAAFGDEGAVIE-VLHRGSADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSEGDTPLHDAI----SKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPSAMRVLLSKLP--------------------------RPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQNVNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTL 712
The following BLAST results are available for this feature:
BLAST of TCONS_00063669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIB18.080e-2426.34E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens G... [more]
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