TCONS_00063672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063672
Unique NameTCONS_00063672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063672 ID=TCONS_00063672|Name=TCONS_00063672|organism=Clytia hemisphaerica|type=transcript|length=637bp
AAAAATGActgaatgaaaagaacaaaagagtGTCAATTGTCAGGGGCCTA
TCCAAACAATTGAAGttcttttgaagctttcaaCCCGTCATTAATCTTTG
GTCTTAGTTTTTTAATGTAAAATGCTTCTAAAAAGGCCAATTGTGACCAA
TTATCATTCGAATCTAAGATTTTACAATTATTCAAGACAGCGTTCAAAAT
GTGTTCTTTATGGTTAATCCCATGTGATTCTCCAAACAATTGTGCGAGAT
TAAACATGTCAGTCAAATCGTGAAAACTATTACAGTTATTTAAATGATGA
TTCATGGGTTGGTCCACTCGTTTCCCATGTTCAATCATACGGGTTTTGAA
ACAACGGTCGGTCTTTCCAACATACCTTTCACCGCAACCAGGgcaaacaa
tttcataaataaCCTTAGCTTTGTGTTCTGTTAAAACTTCGTCTTTAGTT
GGGCAGAACATGGCTAACTTTTTTGATTGATAGCGCGTAATAAATTTTAC
ATCAGGTTTAACGTATCTCCCCAATTGACGAATAAGTGATTTAACTAAGC
GTTCACCATCGAGACCAAGATAAGGAACGTTAACGAAGATTTTGGTGATA
TCATCGTCACTATTCTCATCATCAGTTACGAGAGGGA
Run BLAST on NCBI

protein sequence of TCONS_00063672-protein

>TCONS_00063672-protein ID=TCONS_00063672-protein|Name=TCONS_00063672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
PLVTDDENSDDDITKIFVNVPYLGLDGERLVKSLIRQLGRYVKPDVKFIT
RYQSKKLAMFCPTKDEVLTEHKAKVIYEIVCPGCGERYVGKTDRCFKTRM
IEHGKRVDQPMNHHLNNCNSFHDLTDMFNLAQLFGESHGINHKEHILNAV
LNNCKILDSNDNWSQLAFLEAFYIKKLRPKINDGLKASKELQLFG
Run BLAST on NCBI

transcript from alignment at scaffold_397:235683..236319

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063672 ID=TCONS_00063672|Name=TCONS_00063672|organism=Clytia hemisphaerica|type=transcript|length=637bp|location=Sequence derived from alignment at scaffold_397:235683..236319 (Clytia hemisphaerica)
TCCCTCTCGTAACTGATGATGAGAATAGTGACGATGATATCACCAAAATC
TTCGTTAACGTTCCTTATCTTGGTCTCGATGGTGAACGCTTAGTTAAATC
ACTTATTCGTCAATTGGGGAGATACGTTAAACCTGATGTAAAATTTATTA
CGCGCTATCAATCAAAAAAGTTAGCCATGTTCTGCCCAACTAAAGACGAA
GTTTTAACAGAACACAAAGCTAAGGttatttatgaaattgtttgcCCTGG
TTGCGGTGAAAGGTATGTTGGAAAGACCGACCGTTGTTTCAAAACCCGTA
TGATTGAACATGGGAAACGAGTGGACCAACCCATGAATCATCATTTAAAT
AACTGTAATAGTTTTCACGATTTGACTGACATGTTTAATCTCGCACAATT
GTTTGGAGAATCACATGGGATTAACCATAAAGAACACATTTTGAACGCTG
TCTTGAATAATTGTAAAATCTTAGATTCGAATGATAATTGGTCACAATTG
GCCTTTTTAGAAGCATTTTACATTAAAAAACTAAGACCAAAGATTAATGA
CGGGttgaaagcttcaaaagaaCTTCAATTGTTTGGATAGGCCCCTGACA
ATTGACactcttttgttcttttcattcagTCATTTTT

Coding sequence (CDS) from alignment at scaffold_397:235683..236319

>TCONS_00063672 ID=TCONS_00063672|Name=TCONS_00063672|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_397:235683..236319 (Clytia hemisphaerica)
CCTCTCGTAACTGATGATGAGAATAGTGACGATGATATCACCAAAATCTT
CGTTAACGTTCCTTATCTTGGTCTCGATGGTGAACGCTTAGTTAAATCAC
TTATTCGTCAATTGGGGAGATACGTTAAACCTGATGTAAAATTTATTACG
CGCTATCAATCAAAAAAGTTAGCCATGTTCTGCCCAACTAAAGACGAAGT
TTTAACAGAACACAAAGCTAAGGttatttatgaaattgtttgcCCTGGTT
GCGGTGAAAGGTATGTTGGAAAGACCGACCGTTGTTTCAAAACCCGTATG
ATTGAACATGGGAAACGAGTGGACCAACCCATGAATCATCATTTAAATAA
CTGTAATAGTTTTCACGATTTGACTGACATGTTTAATCTCGCACAATTGT
TTGGAGAATCACATGGGATTAACCATAAAGAACACATTTTGAACGCTGTC
TTGAATAATTGTAAAATCTTAGATTCGAATGATAATTGGTCACAATTGGC
CTTTTTAGAAGCATTTTACATTAAAAAACTAAGACCAAAGATTAATGACG
GGttgaaagcttcaaaagaaCTTCAATTGTTTGGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039914XLOC_039914Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063672-proteinTCONS_00063672-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063672-exon-scaffold_397-1491911889:235683..236319TCONS_00063672-exon-scaffold_397-1491911889:235683..236319Clytia hemisphaericaexon
TCONS_00063672-exon-scaffold_397-1510915933:235683..236319TCONS_00063672-exon-scaffold_397-1510915933:235683..236319Clytia hemisphaericaexon
TCONS_00063672-exon-scaffold_397-1575043694:235683..236319TCONS_00063672-exon-scaffold_397-1575043694:235683..236319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:235683..236319 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01436	1.38703	2.47017	2.42579	5.62957	4.84194	3.66138	4.88836	1.12364	1.89651	3.11299	1.59659	1.58243	1.28125	1.78212	2.42824	1.78171	1.61556	0.689621	1.70804	2.66475	3.29856	1.38136	1.3559	1.24596	2.35354	2.10099	2.8115	1.6731	1.81223
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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