TCONS_00063674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063674
Unique NameTCONS_00063674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063674 ID=TCONS_00063674|Name=TCONS_00063674|organism=Clytia hemisphaerica|type=transcript|length=425bp
CTTATTGGAAATTAAAACATTAGGAGAGAGGTATGAACTATTAATTACAA
CAAAGTCAAATTTTGTCGAACATTTAACCTCTTCTCTTGGAGATCGTGAT
GTCTACAAACAGAAGCTCTTCTCAGCTGCCAAACTTAATATCGAAATTAG
CAAATTTAGTGGCTACGATGACGTCATAGATATTTTTGATACAGATTTCA
AACGAAACGTTATCCCCCAAAGCTGAATGGAAAAGACTCATCATCTTCCT
TTAATCGGAGATGAAGATTCAGCAACAAAAGATGTTGATCAAAAAGCAAA
CCAAAGAACCTCCAAAACAACCACCGAAACAACCACGTCACATTATACTG
ATACAGAGGTGAGTGATCCAACTTCATCCCCTCCTGACCAATCGAAATGT
TTTATTTGTGATTCGTCCGATCATA
Run BLAST on NCBI

transcript from alignment at scaffold_397:246333..246757

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063674 ID=TCONS_00063674|Name=TCONS_00063674|organism=Clytia hemisphaerica|type=transcript|length=425bp|location=Sequence derived from alignment at scaffold_397:246333..246757 (Clytia hemisphaerica)
TATGATCGGACGAATCACAAATAAAACATTTCGATTGGTCAGGAGGGGAT
GAAGTTGGATCACTCACCTCTGTATCAGTATAATGTGACGTGGTTGTTTC
GGTGGTTGTTTTGGAGGTTCTTTGGTTTGCTTTTTGATCAACATCTTTTG
TTGCTGAATCTTCATCTCCGATTAAAGGAAGATGATGAGTCTTTTCCATT
CAGCTTTGGGGGATAACGTTTCGTTTGAAATCTGTATCAAAAATATCTAT
GACGTCATCGTAGCCACTAAATTTGCTAATTTCGATATTAAGTTTGGCAG
CTGAGAAGAGCTTCTGTTTGTAGACATCACGATCTCCAAGAGAAGAGGTT
AAATGTTCGACAAAATTTGACTTTGTTGTAATTAATAGTTCATACCTCTC
TCCTAATGTTTTAATTTCCAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039916XLOC_039916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063674-exon-scaffold_397-1491911889:246333..246757TCONS_00063674-exon-scaffold_397-1491911889:246333..246757Clytia hemisphaericaexon
TCONS_00063674-exon-scaffold_397-1510915933:246333..246757TCONS_00063674-exon-scaffold_397-1510915933:246333..246757Clytia hemisphaericaexon
TCONS_00063674-exon-scaffold_397-1575043694:246333..246757TCONS_00063674-exon-scaffold_397-1575043694:246333..246757Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:246333..246757 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.79223	3.0432	1.11583	0.727774	2.21499	2.45044	1.90051	2.7677	0.138409	2.57163	0.499218	0.656333	0.436947	0.113443	0.0932659	0	0.369903	0.252759	0.5238	0	0.158805	0.232379	0.188324	0.513643	1.76347	2.67555	0.225218	0	0.54691	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top