TCONS_00063675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063675
Unique NameTCONS_00063675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length735

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063675 ID=TCONS_00063675|Name=TCONS_00063675|organism=Clytia hemisphaerica|type=transcript|length=735bp
tcaaaaacaaaacattctttTCTAACACGAAGTCAGTAACGCAACAAAAT
GAATTTAACTGTATTCCTTAATCATGCTGAACAAACAATCAACTTTACAT
TTTGGCAAGGTGAATTCATCCTGGATATATCATTTCCATTTGCCATCATT
GATATCGATTTAAATAATGGGTAAAGATTTTTATTCCCTCCGACAAAACG
AAACCCTAACAGCATTGTATAGAAGACGTCCATGAGCCGAGCGAGAGCTA
CATGCCAAAATTAAAGCCACCAGTAGAGACGAAAGTCGAATTTCTTGTGC
TCGAGTACCACATTCTTCATCTTCCTTCATTCCAATAAATCCTTAATTAA
CGCCTCTTTCCTTTGCCCAGTAAGTTTTTCGTTATtagttttaatttatt
tatttatttattcattagGACGGATGCTGCATTAGTATTTGTAGCTTATT
TGTAGTAAGCATCCAAAAGAAGAAGACAAAACGGGGATAACTGTCCGTCG
AAAAAGTCTTGAAACATAATACCGAGTATGTTCACCATgcaaacaaaatg
aaattgttgACAATCATGCGCCTGCTCCAACTTGCGATGGAACACTTGGG
GAATATACCGTCCCCGACTCAGTGCAAAATACTTTTTCCGAGATAATCAT
CTTCAGTTCTACATTTGAATACCCGTcggcaatgtgccctcccggctATT
ACCATAATGGCATTATGGCAACTCCTGCACTTGGg
Run BLAST on NCBI

transcript from alignment at scaffold_397:259997..260731

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063675 ID=TCONS_00063675|Name=TCONS_00063675|organism=Clytia hemisphaerica|type=transcript|length=735bp|location=Sequence derived from alignment at scaffold_397:259997..260731 (Clytia hemisphaerica)
cCCAAGTGCAGGAGTTGCCATAATGCCATTATGGTAATagccgggagggc
acattgccgACGGGTATTCAAATGTAGAACTGAAGATGATTATCTCGGAA
AAAGTATTTTGCACTGAGTCGGGGACGGTATATTCCCCAAGTGTTCCATC
GCAAGTTGGAGCAGGCGCATGATTGTcaacaatttcattttgtttgcATG
GTGAACATACTCGGTATTATGTTTCAAGACTTTTTCGACGGACAGTTATC
CCCGTTTTGTCTTCTTCTTTTGGATGCTTACTACAAATAAGCTACAAATA
CTAATGCAGCATCCGTCctaatgaataaataaataaataaattaaaacta
ATAACGAAAAACTTACTGGGCAAAGGAAAGAGGCGTTAATTAAGGATTTA
TTGGAATGAAGGAAGATGAAGAATGTGGTACTCGAGCACAAGAAATTCGA
CTTTCGTCTCTACTGGTGGCTTTAATTTTGGCATGTAGCTCTCGCTCGGC
TCATGGACGTCTTCTATACAATGCTGTTAGGGTTTCGTTTTGTCGGAGGG
AATAAAAATCTTTACCCATTATTTAAATCGATATCAATGATGGCAAATGG
AAATGATATATCCAGGATGAATTCACCTTGCCAAAATGTAAAGTTGATTG
TTTGTTCAGCATGATTAAGGAATACAGTTAAATTCATTTTGTTGCGTTAC
TGACTTCGTGTTAGAaaagaatgttttgtttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039917XLOC_039917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063675-exon-scaffold_397-1491911889:259997..260731TCONS_00063675-exon-scaffold_397-1491911889:259997..260731Clytia hemisphaericaexon
TCONS_00063675-exon-scaffold_397-1510915933:259997..260731TCONS_00063675-exon-scaffold_397-1510915933:259997..260731Clytia hemisphaericaexon
TCONS_00063675-exon-scaffold_397-1575043694:259997..260731TCONS_00063675-exon-scaffold_397-1575043694:259997..260731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_397supercontigscaffold_397:259997..260731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.404689	0.26309	0.45821	0.448287	1.09149	0.862511	0.260146	0.405909	0.284186	0.492815	0.273336	0	0.179431	0.372681	0.153197	0.041101	0.253165	0.207589	0	0.0750277	0.0652127	0	0	0.140617	0.0724161	0.0646297	0	0.0987023	0.0748622	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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