TCONS_00063695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063695
Unique NameTCONS_00063695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063695 ID=TCONS_00063695|Name=TCONS_00063695|organism=Clytia hemisphaerica|type=transcript|length=482bp
TTGGATTATTGTTAAAAAGAACTGTTGcCGTCTTTACCACGATGATAAAC
TTGGCTTTCCCGTCAACCACCACCGATGACGTTTTAAAAGCGACAAATGA
CGCCCTTCTCAAACTAACCAATCAGATGAATCAACAATTCGAGAATGCTA
AATTGTATATTGATGAAAAGGTTTTATCAACCAAAAAACAAGACTTAAGG
GaaaaattggaTAAGATGAGGTCACAATTAAAGATTTGTTTCCAACGAGA
TCCAACAAATTATGTGGAATGTCTCGCTGAGAAACATGATGATTTTCGAA
GTGATAAGTCAGTATTTTTCAAGTAcaaagaagaattgaaaaaacaagCA
GAGAAACCGCTACCTTCTTTTGATGTTCACATGTTAGAGGTATGctgttt
ttttctctgaaaagtcggtctttttttaactaaaattttGAACCTAATGT
AAAAAATAACAACTTTTTTAGGAACATTtctc
Run BLAST on NCBI

protein sequence of TCONS_00063695-protein

>TCONS_00063695-protein ID=TCONS_00063695-protein|Name=TCONS_00063695-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
GLLLKRTVAVFTTMINLAFPSTTTDDVLKATNDALLKLTNQMNQQFENAK
LYIDEKVLSTKKQDLREKLDKMRSQLKICFQRDPTNYVECLAEKHDDFRS
DKSVFFKYKEELKKQAEKPLPSFDVHMLEVCCFFL
Run BLAST on NCBI

transcript from alignment at scaffold_398:1304..3182-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063695 ID=TCONS_00063695|Name=TCONS_00063695|organism=Clytia hemisphaerica|type=transcript|length=1879bp|location=Sequence derived from alignment at scaffold_398:1304..3182- (Clytia hemisphaerica)
TTGGATTATTGTTAAAAAGAACTGTTGGTAACACTTTAAAGGTTTTATTT
TTACACGAGTGCTCCCATTTCATATCAGACACATGTTTCATATCAGGACA
GTATCTGTCTTTTGTTATATCGTGCTGATATAAGCAAAAATATGTTTTCC
TTTTCCTCTTTCTGACCAGTCTTGCTCCACATTCATTTCAAAAAGCTTTA
CTACGGTGGAGGTATAAGGACTAAGGTTCTAATTTTACTAGAGACTAACC
AGCTGAGGACGACGGTAAATCAGCACTTTTACCGTCCTCGATATTGCGGG
TCAGAAGTGCGGTTTATTCCAAATTGATACTCTACCGTCCTCAAGAGTAA
ATACATAAACTCGATAATAAGAATAAGGATGGCAGAAAGTCGGCCATAAA
AAGTAGAGCTGACTTCACAAATATTGCAAGTTTTATATTAAAACGTTTGT
TGTTGTTGTTTTTTCAGCCGTCTTTACCACGATGATAAACTTGGCTTTCC
CGTCAACCACCACCGATGACGTTTTAAAAGCGACAAATGACGCCCTTCTC
AAACTAACCAATCAGATGAATCAACAATTCGAGAATGCTAAATTGTATAT
TGATGAAAAGGTTTTATCAACCAAAAAACAAGACTTAAGGGGTTTGTAGC
TTGAAATTGCGAGCACAGTGGAGACTCCTTAACTCGAACCTTCATAACTC
GAACCTCCATAACTCGAACCTCCATAACTCGAACCTCCATAACTCGAACC
TCCATAACTCGAATGTCTCCTAAACTCGAACAATGTTCCTTGTCCCTTCA
ATTAACAATGACTTACATTATTACACAAATATTACTAGGCAAGTATTCAA
CGACCTTGAAATTAACACGCAAAAATTAACATGAATTTTATTATTTCTTT
CCAGGGGTTTTAATTAAGGGTGTTTTTATTAACACGAAATTTTTCAAATC
GTGTTAATAAAATGACTAGTAATATTAGTGTAATAAGGTTCATTACTCCA
TAACTAGAAAAAATTTGTATTCCCATGCGTGCTCGAGTTACGGAGACTTC
GCTGTATAGTGATATTTTATGTAATATCTTTATCACTTTATCACGTGAAT
AGATTGCCCTAAAAAATTTTTTTAGCTTGATAGCTTCCTAACGTCCAGAT
TGACTAAGTAATGATATTTTTTCTGAAATTCTGTCATAAGTGGTCTATGG
TTAGTTTGCTTATGAGTCTACTTCTGTTTTCGCTGCTAATATGAGTATTC
AAAATGGTATTGCGTTAAATAAAAAGCATATTGTCTTAAAGGCTTGAGGA
CACGAGAAGTTTTTTTCGCGTTGGTGCAATGCAACATGCTCCATTCCACC
AACCTGAAATGCTTTCTCGTGTCTCCACCCCATTTTTCTTTCTACCAATA
AAAATTAAATCTCACTTTTGTCCCTGGGACAATGGATTCGAATCAATTTT
GTCCCATGAAGCAAAAAAAACAAAAACAAGAGACACGTTCTTTTTTTCTT
GTGATGTTGGAATGGAGCATTTTGCATTGCACCAACGCGAAAAAAGCTTC
TATTGTCCCCAAGCCTTTCGTATAGCTATAATATTTCAATATTTTCAGAA
AAATTGGATAAGATGAGGTCACAATTAAAGATTTGTTTCCAACGAGATCC
AACAAATTATGTGGAATGTCTCGCTGAGAAACATGATGATTTTCGAAGTG
ATAAGTCAGTATTTTTCAAGTACAAAGAAGAATTGAAAAAACAAGCAGAG
AAACCGCTACCTTCTTTTGATGTTCACATGTTAGAGGTATGCTGTTTTTT
TCTCTGAAAAGTCGGTCTTTTTTTAACTAAAATTTTGAACCTAATGTAAA
AAATAACAACTTTTTTAGGAACATTTCTC

Coding sequence (CDS) from alignment at scaffold_398:1304..3182-

>TCONS_00063695 ID=TCONS_00063695|Name=TCONS_00063695|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_398:1304..3182- (Clytia hemisphaerica)
AAAAATTGGATAAGATGAGGTCACAATTAAAGATTTGTTTCCAACGAGAT
CCAACAAATTATGTGGAATGTCTCGCTGAGAAACATGATGATTTTCGAAG
TGATAAGTCAGTATTTTTCAAGTACAAAGAAGAATTGAAAAAACAAGCAG
AGAAACCGCTACCTTCTTTTGATGTTCACATGTTAGAGGTATGCTGTTTT
TTTCTCTGACCGTCTTTACCACGATGATAAACTTGGCTTTCCCGTCAACC
ACCACCGATGACGTTTTAAAAGCGACAAATGACGCCCTTCTCAAACTAAC
CAATCAGATGAATCAACAATTCGAGAATGCTAAATTGTATATTGATGAAA
AGGTTTTATCAACCAAAAAACAAGACTTAAGGGGGATTATTGTTAAAAAG
AACTGTTGAAAAATTGGATAAGATGAGGTCACAATTAAAGATTTGTTTCC
AACGAGATCCAACAAATTATGTGGAATGTCTCGCTGAGAAACATGATGAT
TTTCGAAGTGATAAGTCAGTATTTTTCAAGTACAAAGAAGAATTGAAAAA
ACAAGCAGAGAAACCGCTACCTTCTTTTGATGTTCACATGTTAGAGGTAT
GCTGTTTTTTTCTCTGACCGTCTTTACCACGATGATAAACTTGGCTTTCC
CGTCAACCACCACCGATGACGTTTTAAAAGCGACAAATGACGCCCTTCTC
AAACTAACCAATCAGATGAATCAACAATTCGAGAATGCTAAATTGTATAT
TGATGAAAAGGTTTTATCAACCAAAAAACAAGACTTAAGGGGGATTATTG
TTAAAAAGAACTGTTGAAAAATTGGATAAGATGAGGTCACAATTAAAGAT
TTGTTTCCAACGAGATCCAACAAATTATGTGGAATGTCTCGCTGAGAAAC
ATGATGATTTTCGAAGTGATAAGTCAGTATTTTTCAAGTACAAAGAAGAA
TTGAAAAAACAAGCAGAGAAACCGCTACCTTCTTTTGATGTTCACATGTT
AGAGGTATGCTGTTTTTTTCTCTGACCGTCTTTACCACGATGATAAACTT
GGCTTTCCCGTCAACCACCACCGATGACGTTTTAAAAGCGACAAATGACG
CCCTTCTCAAACTAACCAATCAGATGAATCAACAATTCGAGAATGCTAAA
TTGTATATTGATGAAAAGGTTTTATCAACCAAAAAACAAGACTTAAGGGG
GATTATTGTTAAAAAGAACTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039922XLOC_039922Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063695-proteinTCONS_00063695-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063695-exon-scaffold_398-1575043694:3156..3182TCONS_00063695-exon-scaffold_398-1575043694:3156..3182Clytia hemisphaericaexon
TCONS_00063695-exon-scaffold_398-1575043694:2542..2715TCONS_00063695-exon-scaffold_398-1575043694:2542..2715Clytia hemisphaericaexon
TCONS_00063695-exon-scaffold_398-1575043694:1304..1584TCONS_00063695-exon-scaffold_398-1575043694:1304..1584Clytia hemisphaericaexon
TCONS_00063695-exon-scaffold_398-1510915933:3156..3182TCONS_00063695-exon-scaffold_398-1510915933:3156..3182Clytia hemisphaericaexon
TCONS_00063695-exon-scaffold_398-1510915933:2542..2715TCONS_00063695-exon-scaffold_398-1510915933:2542..2715Clytia hemisphaericaexon
TCONS_00063695-exon-scaffold_398-1510915933:1304..1584TCONS_00063695-exon-scaffold_398-1510915933:1304..1584Clytia hemisphaericaexon
TCONS_00063695-exon-scaffold_398-1491911889:3156..3182TCONS_00063695-exon-scaffold_398-1491911889:3156..3182Clytia hemisphaericaexon
TCONS_00063695-exon-scaffold_398-1491911889:2542..2715TCONS_00063695-exon-scaffold_398-1491911889:2542..2715Clytia hemisphaericaexon
TCONS_00063695-exon-scaffold_398-1491911889:1304..1584TCONS_00063695-exon-scaffold_398-1491911889:1304..1584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_398supercontigscaffold_398:1304..3182 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.129955	0.126727	0.294284	0.431866	7.88633	5.12399	6.0148	4.8489	2.51875	0.949526	14.6198	11.8769	14.0752	10.2505	12.0279	33.4345	11.8748	14.9972	0	0	14.6252	14.5388	11.1249	11.9306	9.06926	13.6977	5.78816	1.14104	0.14424	0.587831
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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