TCONS_00063709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063709
Unique NameTCONS_00063709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2078

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063709 ID=TCONS_00063709|Name=TCONS_00063709|organism=Clytia hemisphaerica|type=transcript|length=2078bp
cttggataccgatcACTCTCAATCCAACTATCGTTCAAatagcttggata
ccgatcTCTCTCAAATCCAACTATCACTCAAatagcttggataccgatcA
CTCTCAATCCAACTATCGTTCAAATAGTTTGGATACCGATCACTCTCAAT
CCAACTATCACTCAAATAGCTCGGATACCGATCTCTCTCAAAATCCAACT
ATCGTTCAAATAGTTTGGATACCGATCACTCTCAATCCAACTATCACTCA
AATAGCTCGGATACCGATCTCTCTCAAAATCCAACTATCGTTCAATAGTT
TGGATACCGATCACTCTCAATCCAACTATCACTCAAATAGCTCGGATACC
GATCTCTCTCAAAATCCAACTAATCGTTCAAatagcttggataccgatcT
CTCTCGAATCCAACTATCGCTCAAatagcttggataccgatcTCAATTCA
ATCCAACTATCATTACatagcttggataccgatcTTAATTCAATCCAACT
ATCATCACATAGCTTGGATACCGATCTCAATTCAATCCAACTATCATCAC
ATAGCTTGGATACCTACCTTATTTCTTGAATACGATTGCTCAGTTCAAGT
TTTAGAGCAGATTGAACACCGATCGCTCAATCCACGTCACAAGCAAGACT
GGATACCGATTGCTCAATTCACACTCTGCTCCCAGAGACCTGGATACCAA
TCGCACAACTCAAGTACACAAATCATAGATCACACCGATCACCACATTCA
ATCTAGACGAACAAAGTCTAGACATCAAGTCAAGTACCACTATATCTTGA
CTCTAATAAGCAGCTGGCTAACAAAATTCAGTAACTGCCTTCCATCAATT
TAGTCTTGAAGAGACTAGCTTCAAGCCAACACTCAACTTCTTCTCTTCTC
CACCCATCTGTCTCGACATAATGCCGGAGGCAAGAGAGATTTCTCAAGCA
AAGAGAAAAAGGAACAGCAAGAAGTACATGATCACTAAAACCATAGAGGA
GATCAGTTCACTAATCTTAACCAGAGGTAGTCGAACTAAGGTAAAATACC
TTCGAACTGCTCTCGATGACATGCATCATCAAGCTGTTATACTACACGAA
GACCTGATGCTACTCCTGGAAAACGATAACCCTGATTACAATGACATCTG
GATCGATGACCTCTCCTTGAGAATCAACTCTTGTTGTGGTGACGTTACAA
CATACCTGAAGGAACGTGAGAACGACACGTTATCCTCGTCTTCATcggaa
aaagttaaagaaagagTCCAAATGTGGAGAGAAGAAACCGCAACCCAAAT
CCAAGAAGAGGAGAAATCCCTGACAGATGACAGACCTCAATCACTGCCTG
ACGATATTACCGCAGCCTTCTCACAGCTTCATGTCACTGAGAACCTTACT
GAAACTACAAACAGACGACACAATGCTGATGTAAAGAAATCATCTGATGT
AAAGCACATAGGAAGGAAAAGCAGCAGCCTTTCAGACTTACCACATCTTG
CAAATTCACAAGAAACAGCCCCCTTTCTCGACAACTATCCTAACCTGCAA
AGGGGAAACCAACCAAACTCAAGTTTACCCAGTCCTCTCCGAAGACCAGA
TGTTTACGAAGACGGACTAGACCCAACTTCAGAATCAAGACTCTACCTTC
AAGAACCAATCCAAACAACAAGAGATCAACTCAAATCTCGATTATCAAGT
GGTGAGTTTACCAACCAGGACCAAAGTTACGAAAACAGTCGAACACAAAG
GCAAGTTACGTTCCAAGAGAATCTGCGAACCGATGCACCACTGAATAGTC
CAATCATTGAAGGTGATCCTCTCCACAGTACCTACATCATTCAAGACAAA
CGTCAGCCAAGTGCCAAAATAAAGTCCACAAGGGAGAGAGATAAAGAAAC
CGAAAGGGTATCGCCGGAAGACAAAGATGAATCTTCCTCCACACAAGCTG
TAGATGCTTGGATAGACAACCTCAATCGATCCACTATTAACATCATCCCA
GATAGTAGGATCCATGACGTTCAAATGCAGATGCTCATTCAGCAAAGACT
GCCACCCCAAAGACTTCCTACCTTTGAT
Run BLAST on NCBI

protein sequence of TCONS_00063709-protein

>TCONS_00063709-protein ID=TCONS_00063709-protein|Name=TCONS_00063709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MPEAREISQAKRKRNSKKYMITKTIEEISSLILTRGSRTKVKYLRTALDD
MHHQAVILHEDLMLLLENDNPDYNDIWIDDLSLRINSCCGDVTTYLKERE
NDTLSSSSSEKVKERVQMWREETATQIQEEEKSLTDDRPQSLPDDITAAF
SQLHVTENLTETTNRRHNADVKKSSDVKHIGRKSSSLSDLPHLANSQETA
PFLDNYPNLQRGNQPNSSLPSPLRRPDVYEDGLDPTSESRLYLQEPIQTT
RDQLKSRLSSGEFTNQDQSYENSRTQRQVTFQENLRTDAPLNSPIIEGDP
LHSTYIIQDKRQPSAKIKSTRERDKETERVSPEDKDESSSTQAVDAWIDN
LNRSTINIIPDSRIHDVQMQMLIQQRLPPQRLPTFD
Run BLAST on NCBI

transcript from alignment at scaffold_399:1312..3507+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063709 ID=TCONS_00063709|Name=TCONS_00063709|organism=Clytia hemisphaerica|type=transcript|length=2196bp|location=Sequence derived from alignment at scaffold_399:1312..3507+ (Clytia hemisphaerica)
cttggataccgatcACTCTCAATCCAACTATCGTTCAAatagcttggata
ccgatcTCTCTCAAATCCAACTATCACTCAAatagcttggataccgatcA
CTCTCAATCCAACTATCGTTCAAATAGTTTGGATACCGATCACTCTCAAT
CCAACTATCACTCAAATAGCTCGGATACCGATCTCTCTCAAAATCCAACT
ATCGTTCAAATAGTTTGGATACCGATCACTCTCAATCCAACTATCACTCA
AATAGCTCGGATACCGATCTCTCTCAAAATCCAACTATCGTTCAATAGTT
TGGATACCGATCACTCTCAATCCAACTATCACTCAAATAGCTCGGATACC
GATCTCTCTCAAAATCCAACTAATCGTTCAAatagcttggataccgatcT
CTCTCGAATCCAACTATCGCTCAAatagcttggataccgatcTCTATCAT
ATTGCTCAAATAGCTTAGATACCGATTTCAACTCAATCCAATATCGCCAA
ATAGCTTGGATACTGATCACAATTCAATCCAACTATCATCACatagcttg
gataccgatcTCAATTCAATCCAACTATCATTACatagcttggataccga
tcTTAATTCAATCCAACTATCATCACATAGCTTGGATACCGATCTCAATT
CAATCCAACTATCATCACATAGCTTGGATACCTACCTTATTTCTTGAATA
CGATTGCTCAGTTCAAGTTTTAGAGCAGATTGAACACCGATCGCTCAATC
CACGTCACAAGCAAGACTGGATACCGATTGCTCAATTCACACTCTGCTCC
CAGAGACCTGGATACCAATCGCACAACTCAAGTACACAAATCATAGATCA
CACCGATCACCACATTCAATCTAGACGAACAAAGTCTAGACATCAAGTCA
AGTACCACTATATCTTGACTCTAATAAGCAGCTGGCTAACAAAATTCAGT
AACTGCCTTCCATCAATTTAGTCTTGAAGAGACTAGCTTCAAGCCAACAC
TCAACTTCTTCTCTTCTCCACCCATCTGTCTCGACATAATGCCGGAGGCA
AGAGAGATTTCTCAAGCAAAGAGAAAAAGGAACAGCAAGAAGTACATGAT
CACTAAAACCATAGAGGAGATCAGTTCACTAATCTTAACCAGAGGTAGTC
GAACTAAGGTAAAATACCTTCGAACTGCTCTCGATGACATGCATCATCAA
GCTGTTATACTACACGAAGACCTGATGCTACTCCTGGAAAACGATAACCC
TGATTACAATGACATCTGGATCGATGACCTCTCCTTGAGAATCAACTCTT
GTTGTGGTGACGTTACAACATACCTGAAGGAACGTGAGAACGACACGTTA
TCCTCGTCTTCATcggaaaaagttaaagaaagagTCCAAATGTGGAGAGA
AGAAACCGCAACCCAAATCCAAGAAGAGGAGAAATCCCTGACAGATGACA
GACCTCAATCACTGCCTGACGATATTACCGCAGCCTTCTCACAGCTTCAT
GTCACTGAGAACCTTACTGAAACTACAAACAGACGACACAATGCTGATGT
AAAGAAATCATCTGATGTAAAGCACATAGGAAGGAAAAGCAGCAGCCTTT
CAGACTTACCACATCTTGCAAATTCACAAGAAACAGCCCCCTTTCTCGAC
AACTATCCTAACCTGCAAAGGGGAAACCAACCAAACTCAAGTTTACCCAG
TCCTCTCCGAAGACCAGATGTTTACGAAGACGGACTAGACCCAACTTCAG
AATCAAGACTCTACCTTCAAGAACCAATCCAAACAACAAGAGATCAACTC
AAATCTCGATTATCAAGTGGTGAGTTTACCAACCAGGACCAAAGTTACGA
AAACAGTCGAACACAAAGGCAAGTTACGTTCCAAGAGAATCTGCGAACCG
ATGCACCACTGAATAGTCCAATCATTGAAGGTGATCCTCTCCACAGTACC
TACATCATTCAAGACAAACGTCAGCCAAGTGCCAAAATAAAGTCCACAAG
GGAGAGAGATAAAGAAACCGAAAGGGTATCGCCGGAAGACAAAGATGAAT
CTTCCTCCACACAAGCTGTAGATGCTTGGATAGACAACCTCAATCGATCC
ACTATTAACATCATCCCAGATAGTAGGATCCATGACGTTCAAATGCAGAT
GCTCATTCAGCAAAGACTGCCACCCCAAAGACTTCCTACCTTTGAT

Coding sequence (CDS) from alignment at scaffold_399:1312..3507+

>TCONS_00063709 ID=TCONS_00063709|Name=TCONS_00063709|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_399:1312..3507+ (Clytia hemisphaerica)
ATGCCGGAGGCAAGAGAGATTTCTCAAGCAAAGAGAAAAAGGAACAGCAA
GAAGTACATGATCACTAAAACCATAGAGGAGATCAGTTCACTAATCTTAA
CCAGAGGTAGTCGAACTAAGGTAAAATACCTTCGAACTGCTCTCGATGAC
ATGCATCATCAAGCTGTTATACTACACGAAGACCTGATGCTACTCCTGGA
AAACGATAACCCTGATTACAATGACATCTGGATCGATGACCTCTCCTTGA
GAATCAACTCTTGTTGTGGTGACGTTACAACATACCTGAAGGAACGTGAG
AACGACACGTTATCCTCGTCTTCATcggaaaaagttaaagaaagagTCCA
AATGTGGAGAGAAGAAACCGCAACCCAAATCCAAGAAGAGGAGAAATCCC
TGACAGATGACAGACCTCAATCACTGCCTGACGATATTACCGCAGCCTTC
TCACAGCTTCATGTCACTGAGAACCTTACTGAAACTACAAACAGACGACA
CAATGCTGATGTAAAGAAATCATCTGATGTAAAGCACATAGGAAGGAAAA
GCAGCAGCCTTTCAGACTTACCACATCTTGCAAATTCACAAGAAACAGCC
CCCTTTCTCGACAACTATCCTAACCTGCAAAGGGGAAACCAACCAAACTC
AAGTTTACCCAGTCCTCTCCGAAGACCAGATGTTTACGAAGACGGACTAG
ACCCAACTTCAGAATCAAGACTCTACCTTCAAGAACCAATCCAAACAACA
AGAGATCAACTCAAATCTCGATTATCAAGTGGTGAGTTTACCAACCAGGA
CCAAAGTTACGAAAACAGTCGAACACAAAGGCAAGTTACGTTCCAAGAGA
ATCTGCGAACCGATGCACCACTGAATAGTCCAATCATTGAAGGTGATCCT
CTCCACAGTACCTACATCATTCAAGACAAACGTCAGCCAAGTGCCAAAAT
AAAGTCCACAAGGGAGAGAGATAAAGAAACCGAAAGGGTATCGCCGGAAG
ACAAAGATGAATCTTCCTCCACACAAGCTGTAGATGCTTGGATAGACAAC
CTCAATCGATCCACTATTAACATCATCCCAGATAGTAGGATCCATGACGT
TCAAATGCAGATGCTCATTCAGCAAAGACTGCCACCCCAAAGACTTCCTA
CCTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039935XLOC_039935Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063709-proteinTCONS_00063709-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063709-exon-scaffold_399-1491911889:1312..1735TCONS_00063709-exon-scaffold_399-1491911889:1312..1735Clytia hemisphaericaexon
TCONS_00063709-exon-scaffold_399-1510915933:1312..1735TCONS_00063709-exon-scaffold_399-1510915933:1312..1735Clytia hemisphaericaexon
TCONS_00063709-exon-scaffold_399-1575043694:1312..1735TCONS_00063709-exon-scaffold_399-1575043694:1312..1735Clytia hemisphaericaexon
TCONS_00063709-exon-scaffold_399-1491911889:1854..3507TCONS_00063709-exon-scaffold_399-1491911889:1854..3507Clytia hemisphaericaexon
TCONS_00063709-exon-scaffold_399-1510915933:1854..3507TCONS_00063709-exon-scaffold_399-1510915933:1854..3507Clytia hemisphaericaexon
TCONS_00063709-exon-scaffold_399-1575043694:1854..3507TCONS_00063709-exon-scaffold_399-1575043694:1854..3507Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_399supercontigscaffold_399:1312..3507 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.734359	0.680293	1.75788	1.19919	0.185254	0.118021	0.238385	0.25951	0.234343	0.468864	0.0238611	0.281668	0.0683731	0.0715228	0.125799	0.145569	0.165045	0.110466	0.264524	0.273754	0.28976	0.187992	0.149601	0.178562	0.0611411	0.0878125	0.970325	0.575298	0.342899	0.394331
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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