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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063710 ID=TCONS_00063710|Name=TCONS_00063710|organism=Clytia hemisphaerica|type=transcript|length=1481bp
ccgGGCCTCTCATTTTTgcatcactatgcaaaaaaatcataactgGAACA
AACGGCCCGACAAACCATTACGTCATGTGTaaacaacaaaaatggtagcc
attttcactttcgttttcatatTTCACCATCAGATTGCACCAGGATTTTG
AAACTACCAGCTGACCAGAGCATATTTAAAGAGAGGTGACAGGATTTTCA
ACACAGCCATACAGAAATCAGAACGCTGgatcaaaagaaaataatttatc
attGCAGAATGTCTCATCGGATGAagaagaagtttgtttttgcttcCACG
AGGATGATGTCCTTGATGAATCTTTTTTCAGTGATTTGATGtacaaaagc
aagaaaaaacaattaagGTCATCGCGACCAAAGCGCAAGGTCAGATCAAC
CGTGAAACAGACATTTAGAAACAAGCAGGACTTTTCCAAAGGGAATGTTA
ACAACAATAAAGGTGTTGATGATGAAGTCGAATTAACACAAGTCCTTAGA
AAACTCCCTCCAAAGATCAATCTTAAtttgaatcaaatcaaaaaggaaat
ttcaaaatctcaaACAATGGAGGACAACCATCTTCTACACAAgagaaata
ttgataaaaagctaaagaaaaacaatattttgagaTGCTCCCAGCTCCCT
AAAAGTTATTCATTACCAAACCAAAGCCGTATTTCTCAGCAAAAACTCGA
ATACAAGTCTGTTGAAGAGAAAATGCTAGAACTTCAATACCGTGATATTA
GTTATTCAGATTATGAACTTCTCTTGACACTGGACGATACAGTTAAACCG
CCAACTGCAAACAAGTCAACCTTCAATAAACTATCACAAGAAATGAAGAG
AAACAATGACATTGAATTATGTGTAATTTGCATGGGTGATATTTTGTTTC
AGGAAATTGTTATTACTTTACCGGAATGTGGACACCGTTTTCATAAAGCT
TGCATAGAAAATTGGTTACTGAATTGTTCAAAACAATGCCCTGTGGATAT
GACATATATCTgttagttttttaatttttctcagcACCCATTCATGCTAT
ATTAGAAAGTTATACACCTTAGGAAAAACAATCTACCAAATCTCTGAAca
actgaattttgaaatagcttGATGTCATGAATTTTAGAACAGtacaaaaa
atcttcatttttttcatcttcatttttctttttcatttttcaatttttca
aaagtgttttaTCCTTTAGATTATTCTCATTGGAAATATCattccaacgg
tgtataactttcTAACATAGCATGAATGGGTGCTGAGAAAAGATCACATA
CCATATTCAAAAACTGTTAGTATATATTGATGTAAATTTAAAATTGGTCG
CTTCCTTACACTAATCAATAATCTAAATTATATTTGGTTatattgatcta
ttataatttgGGTCCTTACACTTGCTCAAAATCATAGGTAATACAAATAA
TAGGAGCACTTACTTTTTGTTCAAGAAGAGA Run BLAST on NCBI transcript from alignment at scaffold_399:23559..27100+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063710 ID=TCONS_00063710|Name=TCONS_00063710|organism=Clytia hemisphaerica|type=transcript|length=3542bp|location=Sequence derived from alignment at scaffold_399:23559..27100+ (Clytia hemisphaerica)
ccgGGCCTCTCATTTTTgcatcactatgcaaaaaaatcataactgGAACA
AACGGCCCGACAAACCATTACGTCATGTGTaaacaacaaaaatggtagcc
attttcactttcgttttcatatTTCACCATCAGATTGCACCAGGATTTTG
AAACTACCAGCTGACCAGAGCATATTTAAAGAGAGGTAATTCAAAGAACA
TTTCCTAGCtcaaacttcaatttttgaaagGTATTTAGATTCGGATTTAT
GCTTGCAACATTAGGAGTAGTAGACACTCTTCAAGTTTTGCCACAAGAAA
ATCAAATGAGttttaaagttcaaaaaaatcaaaggtGTAAACAAAAACAT
ACCATTATGAAGGTAAGATACAAATCTGTCTACAGTAGAGGGTTTATATA
AATATGATTATACCTTGATTATGAGCATGTTATTATCTTGGGAAGATCAA
CCCGCTTTCAGTTAGTCTaagaaatcaagctttcagtaaaaacaaatcag
caaaaatgattccgcacatgtaaatgggtcattgtttgaggtctggTAAA
ATTCACGAGAAATAACCTATCCTGCAGTCCTGCGGTGCACTGATCTAGGT
GGGTGGCTTTTTctcgtagatctttttcttgagaagttgTTCTTTAAATT
AGTTTTTTAGGGTTAATACCTTTCATCaagttttttaaatgtttatttca
ttaaaaagcgccagtttaatttttcattcagtcATTAAGTTTTGTGGCGC
ATTCTTTGGCTTGTGATGCGAGTCAAGTAAAAGATATGCCATATGCGTTC
CGGTGGAACGCTAGTGTGACTgactgatttttaaatttgggGGGCTGTAG
CTTTATTTGAGAAAGaatctgaaaaatctgaaaacataTTTAAAATCCAT
GAAAGTTCAAAGTTTTTTAAGActgtaagaaaaatttaaattcatgaTTT
CTTGTTTTGTGAAAACGTCCCGGTTTAGAAAaccaacttttcttttttag
aatataccttacaatctagttttcatatttatagaaactagattgctgac
gtgtgaaaaagaatttcggcatgactgattcttttgtttcgataataaca
tcaaaacttaattttcttctcgtttctttctttcttatcagttcacCCTT
TCTCTCATTACTttcaaagcgtggttagctcaagcggttagatcgtctgt
ctcatatgcatgcggctccgagttcgattccaatgggtgtccaatttttt
caattcttgattttgtttttgtgattctctcatcactttaattttgtatc
acattttcattagagtgaagagatatcgacgcgttgtaatgttaattgct
attagtaattacgcgttcaattcgaatctatgatctgttccctcctagtg
aggagtttaaaacccttataacaaccgtattttataagcattgaataatg
aaattcaaataaccaccacgcaagaaagataagcaaacgattggatcaag
tgtcaaacattttgacctggaaatcaattattattctgCCTTTAAAGTGT
AAAACGAGAAGTTCAATGATTCTGAAAGAAGTTATTTGACGATTCTCTTA
CAAAGAATCActcgctcactcgctggctgaaagtgaaagtgaaagtagtg
aaagtgaaactgaaactgtcagtcagcaaacgcaggcgcaaacgcctata
cccgttcttctatatctcagccttgaataattgcttgtggcaaaaaaaag
attgaagaaaaaaaaacttaaaaaagttcttattaaagtgatgctatcat
agcttatctaaaccttagagagagagcggaggtaatatatgctagctact
tgtttgattgaccttcattataaaagaaggagaattaaaaaaagaaaatt
gacgaattgaaaaattggacatCCATTGGAATCGAATCgatattctaaaa
aagaaaagttggtTTTCTAAACAGGGACGtttgaagtaaaaaaagttttc
aattttttgctctTCATTATATTTACGTATAAATATTGGTCTAATGTTAA
ATGTCAACAAGattttatctttccaacaaggtATTCATATTTTCCGTCAA
GAAGAgcaatttatcaaaatatggcaACTGGTAATTTTTTGGGAACATAC
TTTGGGAACTTTTCAGGAGACTTCTATTTTCCTGCTGATTTTCTTGATCT
GGTGATAATTCGTGTTActcaaacttgatttttttatttctattagGTGA
CAGGATTTTCAACACAGCCATACAGAAATCAGAACGCTGgatcaaaagaa
aataatttatcattGCAGAATGTCTCATCGGATGAagaagaagtttgttt
ttgcttcCACGAGGATGATGTCCTTGATGAATCTTTTTTCAGTGATTTGA
TGtacaaaagcaagaaaaaacaattaagGTCATCGCGACCAAAGCGCAAG
GTCAGATCAACCGTGAAACAGACATTTAGAAACAAGCAGGACTTTTCCAA
AGGGAATGTTAACAACAATAAAGGTGTTGATGATGAAGTCGAATTAACAC
AAGTCCTTAGAAAACTCCCTCCAAAGATCAATCTTAAtttgaatcaaatc
aaaaaggaaatttcaaaatctcaaACAATGGAGGACAACCATCTTCTACA
CAAgagaaatattgataaaaagctaaagaaaaacaatattttgagaTGCT
CCCAGCTCCCTAAAAGTTATTCATTACCAAACCAAAGCCGTATTTCTCAG
CAAAAACTCGAATACAAGTCTGTTGAAGAGAAAATGCTAGAACTTCAATA
CCGTGATATTAGTTATTCAGATTATGAACTTCTCTTGACACTGGACGATA
CAGTTAAACCGCCAACTGCAAACAAGTCAACCTTCAATAAACTATCACAA
GAAATGAAGAGAAACAATGACATTGAATTATGTGTAATTTGCATGGGTGA
TATTTTGTTTCAGGAAATTGTTATTACTTTACCGGAATGTGGACACCGTT
TTCATAAAGCTTGCATAGAAAATTGGTTACTGAATTGTTCAAAACAATGC
CCTGTGGATATGACATATATCTgttagttttttaatttttctcagcACCC
ATTCATGCTATATTAGAAAGTTATACACCTTAGGAAAAACAATCTACCAA
ATCTCTGAAcaactgaattttgaaatagcttGATGTCATGAATTTTAGAA
CAGtacaaaaaatcttcatttttttcatcttcatttttctttttcatttt
tcaatttttcaaaagtgttttaTCCTTTAGATTATTCTCATTGGAAATAT
CattccaacggtgtataactttcTAACATAGCATGAATGGGTGCTGAGAA
AAGATCACATACCATATTCAAAAACTGTTAGTATATATTGATGTAAATTT
AAAATTGGTCGCTTCCTTACACTAATCAATAATCTAAATTATATTTGGTT
atattgatctattataatttgGGTCCTTACACTTGCTCAAAATCATAGGT
AATACAAATAATAGGAGCACTTACTTTTTGTTCAAGAAGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063710-exon-scaffold_399-1491911889:23559..23743 | TCONS_00063710-exon-scaffold_399-1491911889:23559..23743 | Clytia hemisphaerica | exon |
| TCONS_00063710-exon-scaffold_399-1510915933:23559..23743 | TCONS_00063710-exon-scaffold_399-1510915933:23559..23743 | Clytia hemisphaerica | exon |
| TCONS_00063710-exon-scaffold_399-1575043694:23559..23743 | TCONS_00063710-exon-scaffold_399-1575043694:23559..23743 | Clytia hemisphaerica | exon |
| TCONS_00063710-exon-scaffold_399-1491911889:25805..27100 | TCONS_00063710-exon-scaffold_399-1491911889:25805..27100 | Clytia hemisphaerica | exon |
| TCONS_00063710-exon-scaffold_399-1510915933:25805..27100 | TCONS_00063710-exon-scaffold_399-1510915933:25805..27100 | Clytia hemisphaerica | exon |
| TCONS_00063710-exon-scaffold_399-1575043694:25805..27100 | TCONS_00063710-exon-scaffold_399-1575043694:25805..27100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_399 | supercontig | scaffold_399:23559..27100 + |
Blast
The following BLAST results are available for this feature:
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