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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063712 ID=TCONS_00063712|Name=TCONS_00063712|organism=Clytia hemisphaerica|type=transcript|length=1481bp
CTTGATTATGAGCATGTTATTATCTTGGGAAGATCAACCCGCTTTCAGTT
AGTCTaagaaatcaagctttcagtaaaaacaaatcagcaaaaatgattcc
gcacatgtaaatgggtcattgtttgaggtctggTAAAATTCACGAGAAAT
AACCTATCCTGCAGTCCTGCGGTGCACTGATCTAGGTGACAGGATTTTCA
ACACAGCCATACAGAAATCAGAACGCTGgatcaaaagaaaataatttatc
attGCAGAATGTCTCATCGGATGAagaagaagtttgtttttgcttcCACG
AGGATGATGTCCTTGATGAATCTTTTTTCAGTGATTTGATGtacaaaagc
aagaaaaaacaattaagGTCATCGCGACCAAAGCGCAAGGTCAGATCAAC
CGTGAAACAGACATTTAGAAACAAGCAGGACTTTTCCAAAGGGAATGTTA
ACAACAATAAAGGTGTTGATGATGAAGTCGAATTAACACAAGTCCTTAGA
AAACTCCCTCCAAAGATCAATCTTAAtttgaatcaaatcaaaaaggaaat
ttcaaaatctcaaACAATGGAGGACAACCATCTTCTACACAAgagaaata
ttgataaaaagctaaagaaaaacaatattttgagaTGCTCCCAGCTCCCT
AAAAGTTATTCATTACCAAACCAAAGCCGTATTTCTCAGCAAAAACTCGA
ATACAAGTCTGTTGAAGAGAAAATGCTAGAACTTCAATACCGTGATATTA
GTTATTCAGATTATGAACTTCTCTTGACACTGGACGATACAGTTAAACCG
CCAACTGCAAACAAGTCAACCTTCAATAAACTATCACAAGAAATGAAGAG
AAACAATGACATTGAATTATGTGTAATTTGCATGGGTGATATTTTGTTTC
AGGAAATTGTTATTACTTTACCGGAATGTGGACACCGTTTTCATAAAGCT
TGCATAGAAAATTGGTTACTGAATTGTTCAAAACAATGCCCTGTGGATAT
GACATATATCTgttagttttttaatttttctcagcACCCATTCATGCTAT
ATTAGAAAGTTATACACCTTAGGAAAAACAATCTACCAAATCTCTGAAca
actgaattttgaaatagcttGATGTCATGAATTTTAGAACAGtacaaaaa
atcttcatttttttcatcttcatttttctttttcatttttcaatttttca
aaagtgttttaTCCTTTAGATTATTCTCATTGGAAATATCattccaacgg
tgtataactttcTAACATAGCATGAATGGGTGCTGAGAAAAGATCACATA
CCATATTCAAAAACTGTTAGTATATATTGATGTAAATTTAAAATTGGTCG
CTTCCTTACACTAATCAATAATCTAAATTATATTTGGTTatattgatcta
ttataatttgGGTCCTTACACTTGCTCAAAATCATAGGTAATACAAATAA
TAGGAGCACTTACTTTTTGTTCAAGAAGAGA Run BLAST on NCBI transcript from alignment at scaffold_399:23972..27100+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063712 ID=TCONS_00063712|Name=TCONS_00063712|organism=Clytia hemisphaerica|type=transcript|length=3129bp|location=Sequence derived from alignment at scaffold_399:23972..27100+ (Clytia hemisphaerica)
CTTGATTATGAGCATGTTATTATCTTGGGAAGATCAACCCGCTTTCAGTT
AGTCTaagaaatcaagctttcagtaaaaacaaatcagcaaaaatgattcc
gcacatgtaaatgggtcattgtttgaggtctggTAAAATTCACGAGAAAT
AACCTATCCTGCAGTCCTGCGGTGCACTGATCTAGGTGGGTGGCTTTTTc
tcgtagatctttttcttgagaagttgTTCTTTAAATTAGTTTTTTAGGGT
TAATACCTTTCATCaagttttttaaatgtttatttcattaaaaagcgcca
gtttaatttttcattcagtcATTAAGTTTTGTGGCGCATTCTTTGGCTTG
TGATGCGAGTCAAGTAAAAGATATGCCATATGCGTTCCGGTGGAACGCTA
GTGTGACTgactgatttttaaatttgggGGGCTGTAGCTTTATTTGAGAA
AGaatctgaaaaatctgaaaacataTTTAAAATCCATGAAAGTTCAAAGT
TTTTTAAGActgtaagaaaaatttaaattcatgaTTTCTTGTTTTGTGAA
AACGTCCCGGTTTAGAAAaccaacttttcttttttagaatataccttaca
atctagttttcatatttatagaaactagattgctgacgtgtgaaaaagaa
tttcggcatgactgattcttttgtttcgataataacatcaaaacttaatt
ttcttctcgtttctttctttcttatcagttcacCCTTTCTCTCATTACTt
tcaaagcgtggttagctcaagcggttagatcgtctgtctcatatgcatgc
ggctccgagttcgattccaatgggtgtccaattttttcaattcttgattt
tgtttttgtgattctctcatcactttaattttgtatcacattttcattag
agtgaagagatatcgacgcgttgtaatgttaattgctattagtaattacg
cgttcaattcgaatctatgatctgttccctcctagtgaggagtttaaaac
ccttataacaaccgtattttataagcattgaataatgaaattcaaataac
caccacgcaagaaagataagcaaacgattggatcaagtgtcaaacatttt
gacctggaaatcaattattattctgCCTTTAAAGTGTAAAACGAGAAGTT
CAATGATTCTGAAAGAAGTTATTTGACGATTCTCTTACAAAGAATCActc
gctcactcgctggctgaaagtgaaagtgaaagtagtgaaagtgaaactga
aactgtcagtcagcaaacgcaggcgcaaacgcctatacccgttcttctat
atctcagccttgaataattgcttgtggcaaaaaaaagattgaagaaaaaa
aaacttaaaaaagttcttattaaagtgatgctatcatagcttatctaaac
cttagagagagagcggaggtaatatatgctagctacttgtttgattgacc
ttcattataaaagaaggagaattaaaaaaagaaaattgacgaattgaaaa
attggacatCCATTGGAATCGAATCgatattctaaaaaagaaaagttggt
TTTCTAAACAGGGACGtttgaagtaaaaaaagttttcaattttttgctct
TCATTATATTTACGTATAAATATTGGTCTAATGTTAAATGTCAACAAGat
tttatctttccaacaaggtATTCATATTTTCCGTCAAGAAGAgcaattta
tcaaaatatggcaACTGGTAATTTTTTGGGAACATACTTTGGGAACTTTT
CAGGAGACTTCTATTTTCCTGCTGATTTTCTTGATCTGGTGATAATTCGT
GTTActcaaacttgatttttttatttctattagGTGACAGGATTTTCAAC
ACAGCCATACAGAAATCAGAACGCTGgatcaaaagaaaataatttatcat
tGCAGAATGTCTCATCGGATGAagaagaagtttgtttttgcttcCACGAG
GATGATGTCCTTGATGAATCTTTTTTCAGTGATTTGATGtacaaaagcaa
gaaaaaacaattaagGTCATCGCGACCAAAGCGCAAGGTCAGATCAACCG
TGAAACAGACATTTAGAAACAAGCAGGACTTTTCCAAAGGGAATGTTAAC
AACAATAAAGGTGTTGATGATGAAGTCGAATTAACACAAGTCCTTAGAAA
ACTCCCTCCAAAGATCAATCTTAAtttgaatcaaatcaaaaaggaaattt
caaaatctcaaACAATGGAGGACAACCATCTTCTACACAAgagaaatatt
gataaaaagctaaagaaaaacaatattttgagaTGCTCCCAGCTCCCTAA
AAGTTATTCATTACCAAACCAAAGCCGTATTTCTCAGCAAAAACTCGAAT
ACAAGTCTGTTGAAGAGAAAATGCTAGAACTTCAATACCGTGATATTAGT
TATTCAGATTATGAACTTCTCTTGACACTGGACGATACAGTTAAACCGCC
AACTGCAAACAAGTCAACCTTCAATAAACTATCACAAGAAATGAAGAGAA
ACAATGACATTGAATTATGTGTAATTTGCATGGGTGATATTTTGTTTCAG
GAAATTGTTATTACTTTACCGGAATGTGGACACCGTTTTCATAAAGCTTG
CATAGAAAATTGGTTACTGAATTGTTCAAAACAATGCCCTGTGGATATGA
CATATATCTgttagttttttaatttttctcagcACCCATTCATGCTATAT
TAGAAAGTTATACACCTTAGGAAAAACAATCTACCAAATCTCTGAAcaac
tgaattttgaaatagcttGATGTCATGAATTTTAGAACAGtacaaaaaat
cttcatttttttcatcttcatttttctttttcatttttcaatttttcaaa
agtgttttaTCCTTTAGATTATTCTCATTGGAAATATCattccaacggtg
tataactttcTAACATAGCATGAATGGGTGCTGAGAAAAGATCACATACC
ATATTCAAAAACTGTTAGTATATATTGATGTAAATTTAAAATTGGTCGCT
TCCTTACACTAATCAATAATCTAAATTATATTTGGTTatattgatctatt
ataatttgGGTCCTTACACTTGCTCAAAATCATAGGTAATACAAATAATA
GGAGCACTTACTTTTTGTTCAAGAAGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063712-exon-scaffold_399-1491911889:23972..24156 | TCONS_00063712-exon-scaffold_399-1491911889:23972..24156 | Clytia hemisphaerica | exon |
| TCONS_00063712-exon-scaffold_399-1510915933:23972..24156 | TCONS_00063712-exon-scaffold_399-1510915933:23972..24156 | Clytia hemisphaerica | exon |
| TCONS_00063712-exon-scaffold_399-1575043694:23972..24156 | TCONS_00063712-exon-scaffold_399-1575043694:23972..24156 | Clytia hemisphaerica | exon |
| TCONS_00063712-exon-scaffold_399-1491911889:25805..27100 | TCONS_00063712-exon-scaffold_399-1491911889:25805..27100 | Clytia hemisphaerica | exon |
| TCONS_00063712-exon-scaffold_399-1510915933:25805..27100 | TCONS_00063712-exon-scaffold_399-1510915933:25805..27100 | Clytia hemisphaerica | exon |
| TCONS_00063712-exon-scaffold_399-1575043694:25805..27100 | TCONS_00063712-exon-scaffold_399-1575043694:25805..27100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_399 | supercontig | scaffold_399:23972..27100 + |
Blast
The following BLAST results are available for this feature:
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