Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063719 ID=TCONS_00063719|Name=TCONS_00063719|organism=Clytia hemisphaerica|type=transcript|length=1113bpRun BLAST on NCBI protein sequence of TCONS_00063719-protein >TCONS_00063719-protein ID=TCONS_00063719-protein|Name=TCONS_00063719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp MAVSSGALAGKISLVTGAATGIGRAVCELFAKEGATVIGVGLQNISPVIERun BLAST on NCBI transcript from alignment at scaffold_399:149313..164074- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063719 ID=TCONS_00063719|Name=TCONS_00063719|organism=Clytia hemisphaerica|type=transcript|length=14762bp|location=Sequence derived from alignment at scaffold_399:149313..164074- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_399:149313..164074- >TCONS_00063719 ID=TCONS_00063719|Name=TCONS_00063719|organism=Clytia hemisphaerica|type=CDS|length=6858bp|location=Sequence derived from alignment at scaffold_399:149313..164074- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00063719 vs. Swiss-Prot (Human)
Match: DHB8 (Estradiol 17-beta-dehydrogenase 8 OS=Homo sapiens GN=HSD17B8 PE=1 SV=2) HSP 1 Score: 232.261 bits (591), Expect = 2.810e-73 Identity = 123/254 (48.43%), Postives = 161/254 (63.39%), Query Frame = 2 Query: 68 LAGKISLVTGAATGIGRAVCELFAKEGATVIGVGLQNIS----------PVIENLPKNTNLPHLALECDVSSEESIKQTFAEILKEYNQTPTIAVNSAGITKDSFLIKQSEKDFDDVINVNLKGTFFITKHLCGYLIKNKVSGGSIVNIASIVGKTGNIGQANYTASKAGVVGLTKTTALELARFNVRCNAVLPGFITTAMTDKVPQPVRDQVCKMIPMQTFGQPQDIAEACLFLASDKSRYITGTTLEVAGGL 799 L ++LVTGA +GIGRAV A EGATV L + P + P N H A + DVS + + ++ +++ P++ V+ AGIT+D FL+ SE D+D VI VNLKGTF +T+ L+ N G SI+NI+SIVGK GN+GQ NY ASKAGV+GLT+T A EL R +RCN+VLPGFI T MT KVPQ V D++ +MIPM G P+D+A+ FLAS+ S YITGT++EV GGL Sbjct: 9 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGN--HAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRG-SIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGL 259 The following BLAST results are available for this feature:
BLAST of TCONS_00063719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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