TCONS_00063752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063752
Unique NameTCONS_00063752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063752 ID=TCONS_00063752|Name=TCONS_00063752|organism=Clytia hemisphaerica|type=transcript|length=484bp
ATACAAATGACACTCCCATATGGATAAGATACTTGACGAGAGAGCAGGAT
CAAATCATATTCGTTACAGAGGAATTCAAAACTCAACCCCATTGAAACAA
CCAACATCCAAAATGGCGAAGAATTGTTCAAACGCGTCCGCAACCGCAAG
CGGATTCATGCCAGGCTTCCGTGTCTGGACACTGAAGGCTTTCGATGAGA
GGGGACAATGTATTGTTGAAGTTTCACAAGACATGGGCAGcaataataaa
aaatacaaacacTTCTGCGAACAAATCGCCGCTAAGGGATACCAATTAAC
CGCCAGCCAAGCGGCAGAATTGAGCAGCACCCTTTATCTCAATATAAATT
GGGACAACAGTAATGTTTCCTTCAAACAGTACATGCAAATGATATAAATC
ATTTCATAATATGGTCATGTATTTTAAGTTATATGTTATGATATTATCTT
TGCAAAATTACTTTCTTATTATGACAAAGTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00063752-protein

>TCONS_00063752-protein ID=TCONS_00063752-protein|Name=TCONS_00063752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MDKILDERAGSNHIRYRGIQNSTPLKQPTSKMAKNCSNASATASGFMPGF
RVWTLKAFDERGQCIVEVSQDMGSNNKKYKHFCEQIAAKGYQLTASQAAE
LSSTLYLNINWDNSNVSFKQYMQMI
Run BLAST on NCBI

transcript from alignment at scaffold_40:51428..52318+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063752 ID=TCONS_00063752|Name=TCONS_00063752|organism=Clytia hemisphaerica|type=transcript|length=891bp|location=Sequence derived from alignment at scaffold_40:51428..52318+ (Clytia hemisphaerica)
ATACAAATGACACTCCCATATGGATAAGATACTTGACGAGAGAGCAGGAT
CAAATCATATTCGTTACAGAGGTAAAATTCTCCTTTTCTCTTCTAAGagc
aactttataagaataatgaggctcaaaaacaaccgaaaaataagaacaat
ctaaGAACAAGCTGGGTTGTCTGAATATGAAGCAAGTAAATGGTCGAAGT
AGTAAAAATAGGATATAAAgattaaaataacttaaatttttgcaaagaaa
taagaacagccgagcctaaaaaatttactggttcttacaaaaaaggTTTA
ATTGTTTAATTGTAATTAGTAATAACAACTAATTTGCGCTCTCAAAAATC
CATTTGGTGCATAACCTCAATTTGACCAGGTCTGTAACCTCTAGGCTTTT
TGTATTAAGAACGTATTCTAGTGAAAAAGAGACGAACTTTAGACGGAAAG
TTTAAAAGCTCTCTCTTCTACATTTTAGGAATTCAAAACTCAACCCCATT
GAAACAACCAACATCCAAAATGGCGAAGAATTGTTCAAACGCGTCCGCAA
CCGCAAGCGGATTCATGCCAGGCTTCCGTGTCTGGACACTGAAGGCTTTC
GATGAGAGGGGACAATGTATTGTTGAAGTTTCACAAGACATGGGCAGcaa
taataaaaaatacaaacacTTCTGCGAACAAATCGCCGCTAAGGGATACC
AATTAACCGCCAGCCAAGCGGCAGAATTGAGCAGCACCCTTTATCTCAAT
ATAAATTGGGACAACAGTAATGTTTCCTTCAAACAGTACATGCAAATGAT
ATAAATCATTTCATAATATGGTCATGTATTTTAAGTTATATGTTATGATA
TTATCTTTGCAAAATTACTTTCTTATTATGACAAAGTTTTT

Coding sequence (CDS) from alignment at scaffold_40:51428..52318+

>TCONS_00063752 ID=TCONS_00063752|Name=TCONS_00063752|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_40:51428..52318+ (Clytia hemisphaerica)
ATGGATAAGATACTTGACGAGAGAGCAGGATCAAATCATATTCGTTACAG
AGGAATTCAAAACTCAACCCCATTGAAACAACCAACATCCAAAATGGCGA
AGAATTGTTCAAACGCGTCCGCAACCGCAAGCGGATTCATGCCAGGCTTC
CGTGTCTGGACACTGAAGGCTTTCGATGAGAGGGGACAATGTATTGTTGA
AGTTTCACAAGACATGGGCAGcaataataaaaaatacaaacacTTCTGCG
AACAAATCGCCGCTAAGGGATACCAATTAACCGCCAGCCAAGCGGCAGAA
TTGAGCAGCACCCTTTATCTCAATATAAATTGGGACAACAGTAATGTTTC
CTTCAAACAGTACATGCAAATGATATAAATGGATAAGATACTTGACGAGA
GAGCAGGATCAAATCATATTCGTTACAGAGGAATTCAAAACTCAACCCCA
TTGAAACAACCAACATCCAAAATGGCGAAGAATTGTTCAAACGCGTCCGC
AACCGCAAGCGGATTCATGCCAGGCTTCCGTGTCTGGACACTGAAGGCTT
TCGATGAGAGGGGACAATGTATTGTTGAAGTTTCACAAGACATGGGCAGc
aataataaaaaatacaaacacTTCTGCGAACAAATCGCCGCTAAGGGATA
CCAATTAACCGCCAGCCAAGCGGCAGAATTGAGCAGCACCCTTTATCTCA
ATATAAATTGGGACAACAGTAATGTTTCCTTCAAACAGTACATGCAAATG
ATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039973XLOC_039973Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063752-proteinTCONS_00063752-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063752-exon-scaffold_40-1491911889:51428..51498TCONS_00063752-exon-scaffold_40-1491911889:51428..51498Clytia hemisphaericaexon
TCONS_00063752-exon-scaffold_40-1510915933:51428..51498TCONS_00063752-exon-scaffold_40-1510915933:51428..51498Clytia hemisphaericaexon
TCONS_00063752-exon-scaffold_40-1575043694:51428..51498TCONS_00063752-exon-scaffold_40-1575043694:51428..51498Clytia hemisphaericaexon
TCONS_00063752-exon-scaffold_40-1491911889:51906..52318TCONS_00063752-exon-scaffold_40-1491911889:51906..52318Clytia hemisphaericaexon
TCONS_00063752-exon-scaffold_40-1510915933:51906..52318TCONS_00063752-exon-scaffold_40-1510915933:51906..52318Clytia hemisphaericaexon
TCONS_00063752-exon-scaffold_40-1575043694:51906..52318TCONS_00063752-exon-scaffold_40-1575043694:51906..52318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:51428..52318 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51604	0	0	1.84054e-05	0.347954	0.412437	0.234972	1.26164	2.06557	3.59655	0.392113	0.17184	0.171601	0.178209	0	0.235845	678.666	1030.37	0	0.287015	2722.02	2548.44	271.767	659.635	712.721	779.943	1.41519	0.188791	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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