TCONS_00063821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063821
Unique NameTCONS_00063821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063821 ID=TCONS_00063821|Name=TCONS_00063821|organism=Clytia hemisphaerica|type=transcript|length=390bp
AGATGAAACAGAAAGTCTCTCAGAAGCCGAAAGTGAAGCAACACCACCAA
GATCAAAAAAACCTTATGGCAATCAAAGTACCCCCGTTTCAGGAAAAAAG
AAAGACCTTGACATGACAATATCACCAATTATTAATGatcaTTCTGTCTT
AATTCGTGAACTTCTAAGGAAGCAAAAAGCTTTAGAAGAAAGGATTGATA
AACTAGAAGcttctcaaaacaaaagaagaccACCCACAATAGACATAAGA
TCAACAACAAGTAATTACATCAAGGTATGCTACAGCAGGCTATGCGAAAG
ACAGAATCATAAATGGAACTTTGATTACGGAGTGTACTCCTAAGTTAATA
ACGAAATCACAGAAAAACTTAAAGAGAACGTCATAGGGTT
Run BLAST on NCBI

protein sequence of TCONS_00063821-protein

>TCONS_00063821-protein ID=TCONS_00063821-protein|Name=TCONS_00063821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
DETESLSEAESEATPPRSKKPYGNQSTPVSGKKKDLDMTISPIINDHSVL
IRELLRKQKALEERIDKLEASQNKRRPPTIDIRSTTSNYIKVCYSRLCER
QNHKWNFDYGVYS
Run BLAST on NCBI

transcript from alignment at scaffold_401:12150..14134+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063821 ID=TCONS_00063821|Name=TCONS_00063821|organism=Clytia hemisphaerica|type=transcript|length=1985bp|location=Sequence derived from alignment at scaffold_401:12150..14134+ (Clytia hemisphaerica)
AGATGAAACAGAAAGTCTCTCAGAAGCCGAAAGTGAAGCAACACCACCAA
GATCAAAAAAACCTTATGGCAATCAAAGTAAGAATTCACTTTTCCTTTGT
CTTTTCAATTGCTGAGTAGTTTATGTTTGTGACAATGTAATAACTATACA
GTCAGCAGCCCAAGATGGGTTTTATTAATATCCTTACTTACAGAATAAAA
TTTATGCCAAGCATTAGTTTCAGAGTATCTGAGTTATCAGTTTTTTTGTC
TATTGcatctttgaaattcaaaagaaaCACACATGTTGGTGATATTGatt
tgatgatgttttttttaagtttgtttaCGAGGCTTTTCTTTTTTGCAGCA
CTCACAAGATCACCTCTCAAGGAAAACCAAAATAACATTAGATTAAACAG
TAAGATAATTTCATTCACCTATTCCCTCAATTTTTGTCAAGTCAATAAAA
TTGTTAAGTCAGCTTTCCGATTCTGAAAAAGCATGTTTTTCTCTAGCACA
CTAATTGattgataatttatttttttatctttctttatatttcttttttt
cttctcttttcctTGTTTcgacaacaaagacaaaaaggtGTGTCATCTTT
TTAATAAAGAATAATAATTGTTAAAATTTAAGGGAATAATGAACCAAGTT
tagtattttgaaagaaaatgtctttaTTTTTAGGTACCCCCGTTTCAGGA
AAAAAGAAAGACCTTGACATGACAATATCACCAATTATTAATGGTAAAta
aaaaagttgcaatttttaTTTGNTAAGGGAATAATGAACCAAGTTtagta
ttttgaaagaaaatgtctttaTTTTTAGGTACCCCCGTTTCAGGAAAAAA
GAAAGACCTTGACATGACAATATCACCAATTATTAATGGTAAATAAAAAA
GTTgcagtttttatttgaaaatcctTAGTAACCCCCTTACTGCTACAGTA
ACCCTACAGTAGCCCCACAGTAGCATATGCAGATGGAAAggcaaaagtta
ttttcaaaattattttattctatttccacttgttttattattttatttaa
agtttataccaaaaatgttttctttttttagatcaTTCTGTCTTAATTCG
TGAACTTCTAAGGAAGCAAAAAGCTTTAGAAGAAAGGATTGATAAACTAG
AAGcttctcaaaacaaaagaagaccACCCACAATAGACATAAGATCAACA
ACAAGTGTAAGAAAGGGGTTATTCTGACCTTGGGAAGCTGATATTGGTGC
AAAGCAAGGCGAAATTTgtgcttttatcaaaataagaccatttcaagaat
tttaaattttttacaatTCAAAAATGCCAGCAACAACAAATTAATTCTCT
TTGCAATCTGCCAAATTAGTTTCCCCAGCAAAATTTTGTTTCCctcaaaa
atttcttcctgtCAAATTTATCCCCTATGAAATTTAGGGTGAAAGCTTTG
TTTTCAGAATGAAACTTTCTACTCATGCAATCTGTAAGGTTTTCCTCACA
TGGAAACTTAAGGGGATCTGCTAATTTTCTATTAATTATGAATTGAAAAC
ttgtcttttatcttttccCTGCCTCTCCGTGAACTTTCTATAACCTTCAA
AGTCTATAGTAATGTATCATTTTGAACGTTGTCTTTTCTTATAGAATTAC
ATCAAGGTATGCTACAGCAGGCTATGCGAAAGACAGAATCATAAATGGAA
CTTTGATTACGGGTATGATTATTCAGAAAATTTATCACCTTCATAAATAT
GATATAACATAAGTAATATTTTCTTTAAGATAAAGAGTGTATGCAATAAT
GTATTGAATAGACCtctaaagaaattttctttggattttggacaaaaaaa
ttgttttcatttttttaaactgtTCGGTCTTTCATTTGGGTATATACTTA
TTTCATTTATCATTTTGGTTTTCAGAGTGTACTCCTAAGTTAATAACGAA
ATCACAGAAAAACTTAAAGAGAACGTCATAGGGTT

Coding sequence (CDS) from alignment at scaffold_401:12150..14134+

>TCONS_00063821 ID=TCONS_00063821|Name=TCONS_00063821|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_401:12150..14134+ (Clytia hemisphaerica)
GATGAAACAGAAAGTCTCTCAGAAGCCGAAAGTGAAGCAACACCACCAAG
ATCAAAAAAACCTTATGGCAATCAAAGTACCCCCGTTTCAGGAAAAAAGA
AAGACCTTGACATGACAATATCACCAATTATTAATGatcaTTCTGTCTTA
ATTCGTGAACTTCTAAGGAAGCAAAAAGCTTTAGAAGAAAGGATTGATAA
ACTAGAAGcttctcaaaacaaaagaagaccACCCACAATAGACATAAGAT
CAACAACAAGTAATTACATCAAGGTATGCTACAGCAGGCTATGCGAAAGA
CAGAATCATAAATGGAACTTTGATTACGGAGTGTACTCCTAAGATGAAAC
AGAAAGTCTCTCAGAAGCCGAAAGTGAAGCAACACCACCAAGATCAAAAA
AACCTTATGGCAATCAAAGTACCCCCGTTTCAGGAAAAAAGAAAGACCTT
GACATGACAATATCACCAATTATTAATGatcaTTCTGTCTTAATTCGTGA
ACTTCTAAGGAAGCAAAAAGCTTTAGAAGAAAGGATTGATAAACTAGAAG
cttctcaaaacaaaagaagaccACCCACAATAGACATAAGATCAACAACA
AGTAATTACATCAAGGTATGCTACAGCAGGCTATGCGAAAGACAGAATCA
TAAATGGAACTTTGATTACGGAGTGTACTCCTAAGATGAAACAGAAAGTC
TCTCAGAAGCCGAAAGTGAAGCAACACCACCAAGATCAAAAAAACCTTAT
GGCAATCAAAGTACCCCCGTTTCAGGAAAAAAGAAAGACCTTGACATGAC
AATATCACCAATTATTAATGatcaTTCTGTCTTAATTCGTGAACTTCTAA
GGAAGCAAAAAGCTTTAGAAGAAAGGATTGATAAACTAGAAGcttctcaa
aacaaaagaagaccACCCACAATAGACATAAGATCAACAACAAGTAATTA
CATCAAGGTATGCTACAGCAGGCTATGCGAAAGACAGAATCATAAATGGA
ACTTTGATTACGGAGTGTACTCCTAAGATGAAACAGAAAGTCTCTCAGAA
GCCGAAAGTGAAGCAACACCACCAAGATCAAAAAAACCTTATGGCAATCA
AAGTACCCCCGTTTCAGGAAAAAAGAAAGACCTTGACATGACAATATCAC
CAATTATTAATGatcaTTCTGTCTTAATTCGTGAACTTCTAAGGAAGCAA
AAAGCTTTAGAAGAAAGGATTGATAAACTAGAAGcttctcaaaacaaaag
aagaccACCCACAATAGACATAAGATCAACAACAAGTAATTACATCAAGG
TATGCTACAGCAGGCTATGCGAAAGACAGAATCATAAATGGAACTTTGAT
TACGGAGTGTACTCCTAAGATGAAACAGAAAGTCTCTCAGAAGCCGAAAG
TGAAGCAACACCACCAAGATCAAAAAAACCTTATGGCAATCAAAGTACCC
CCGTTTCAGGAAAAAAGAAAGACCTTGACATGACAATATCACCAATTATT
AATGatcaTTCTGTCTTAATTCGTGAACTTCTAAGGAAGCAAAAAGCTTT
AGAAGAAAGGATTGATAAACTAGAAGcttctcaaaacaaaagaagaccAC
CCACAATAGACATAAGATCAACAACAAGTAATTACATCAAGGTATGCTAC
AGCAGGCTATGCGAAAGACAGAATCATAAATGGAACTTTGATTACGGAGT
GTACTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040012XLOC_040012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063821-exon-scaffold_401-1491911889:12150..12226TCONS_00063821-exon-scaffold_401-1491911889:12150..12226Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1510915933:12150..12226TCONS_00063821-exon-scaffold_401-1510915933:12150..12226Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1575043694:12150..12226TCONS_00063821-exon-scaffold_401-1575043694:12150..12226Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1491911889:12833..12892TCONS_00063821-exon-scaffold_401-1491911889:12833..12892Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1510915933:12833..12892TCONS_00063821-exon-scaffold_401-1510915933:12833..12892Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1575043694:12833..12892TCONS_00063821-exon-scaffold_401-1575043694:12833..12892Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1491911889:13231..13355TCONS_00063821-exon-scaffold_401-1491911889:13231..13355Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1510915933:13231..13355TCONS_00063821-exon-scaffold_401-1510915933:13231..13355Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1575043694:13231..13355TCONS_00063821-exon-scaffold_401-1575043694:13231..13355Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1491911889:13794..13861TCONS_00063821-exon-scaffold_401-1491911889:13794..13861Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1510915933:13794..13861TCONS_00063821-exon-scaffold_401-1510915933:13794..13861Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1575043694:13794..13861TCONS_00063821-exon-scaffold_401-1575043694:13794..13861Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1491911889:14075..14134TCONS_00063821-exon-scaffold_401-1491911889:14075..14134Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1510915933:14075..14134TCONS_00063821-exon-scaffold_401-1510915933:14075..14134Clytia hemisphaericaexon
TCONS_00063821-exon-scaffold_401-1575043694:14075..14134TCONS_00063821-exon-scaffold_401-1575043694:14075..14134Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063821-proteinTCONS_00063821-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_401supercontigscaffold_401:12150..14134 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.411311	0	0	4.01664	2.81984	2.89802	2.00532	2.12737	1.67145	2.23105	2.17777	3.14587	2.98077	1.70695	0.994776	2.70956	3.19922	2.29356	1.98232	5.57584	4.86127	2.78349	1.87711	2.73581	3.47465	3.82712	1.64788	0.731161	0.93861
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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