|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063977 ID=TCONS_00063977|Name=TCONS_00063977|organism=Clytia hemisphaerica|type=transcript|length=1064bp
AGCACAATCAACAGACTTCCAATCGTATTTATGTTTCTGGTATAGTATTA
CACTTATTCCGTTGATTAGATTCCCATCTGTCCCCAGGACTTCCCATAAC
ACTTTTTCTAACCTCGATTAAAcgtttttgtgtgatcttcagTCACTAAG
CAATCCTTGAAGTGGTTCAGCTGATTTAGACAATCTTGGACAAAAACGAG
ATAGTTGTTGTGCCATTCCTAGGAAGCGTCTAAGCTCTGTAACATTTTGT
GGGTTTTAGGGGAAACGTTTATTGATTCTACACGTTCGTTTAGTGGCTTT
ATCCTTCTGATAATATAGCAAATTCCAAAGACTCTACTCTGTCCTTGCTA
AATTCACATTTGTCAGCATTTAATGTAACTCTGTTGTCCTTCATTCGTCC
TAAAACTTTTCTCAATCTGCTATCATGATCATGATTTCTTCTACTATTGG
ATGACACCAGTCTGTTGATTGTTCTACTTTTTCGATAACTCCCATCTTCA
GCATGCGATCAATCTCCATTCGCAATGGTTCCAGTAACGGAATTTGAACT
TTTCTCGGTGCAGATAATGTGGAATGGTGTGGCTGATTCGTCGACATCAA
TGTGAAATAGCCCTCCTTTCACTTGCCCTAGACTCCCAAAAtctctttaa
aatgttttacaaAGTCATTCTCACTATTTATAATTTTACTTTTGATCTAC
TTTTGGTCTTCCACCAAGTTGATTCCTGATATGATTGTAAAAAAGCTTCA
ATTCCTGGTTGTCCAAGTAGTGGAGTGGGTACTTGGTCACAGACATGTAT
CACTTCAAACGTTGACTTTTGCCCAACTCAGGCTCGTAACAAAACACCCG
TGTCATTTAAATCTATGCTTATCTGGTCCAACCATATGGTCCAGCTAACT
TTCGATCATGATTACTCAAATCTTTCAGCTGGATTCTGAATAAaggtaga
tgttttttttctccaataaCTCAAACGTCTGCGGCAGTGTCGatcttcat
tttgattttgatcaaaGTAACTCTAGTTActttgattttagaatttgtCT
TCTCTGTCTTCATT Run BLAST on NCBI transcript from alignment at scaffold_404:524888..525951 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063977 ID=TCONS_00063977|Name=TCONS_00063977|organism=Clytia hemisphaerica|type=transcript|length=1064bp|location=Sequence derived from alignment at scaffold_404:524888..525951 (Clytia hemisphaerica)
AATGAAGACAGAGAAGacaaattctaaaatcaaagTAACTAGAGTTACtt
tgatcaaaatcaaaatgaagatCGACACTGCCGCAGACGTTTGAGttatt
ggagaaaaaaaacatctacctTTATTCAGAATCCAGCTGAAAGATTTGAG
TAATCATGATCGAAAGTTAGCTGGACCATATGGTTGGACCAGATAAGCAT
AGATTTAAATGACACGGGTGTTTTGTTACGAGCCTGAGTTGGGCAAAAGT
CAACGTTTGAAGTGATACATGTCTGTGACCAAGTACCCACTCCACTACTT
GGACAACCAGGAATTGAAGCTTTTTTACAATCATATCAGGAATCAACTTG
GTGGAAGACCAAAAGTAGATCAAAAGTAAAATTATAAATAGTGAGAATGA
CTttgtaaaacattttaaagagaTTTTGGGAGTCTAGGGCAAGTGAAAGG
AGGGCTATTTCACATTGATGTCGACGAATCAGCCACACCATTCCACATTA
TCTGCACCGAGAAAAGTTCAAATTCCGTTACTGGAACCATTGCGAATGGA
GATTGATCGCATGCTGAAGATGGGAGTTATCGAAAAAGTAGAACAATCAA
CAGACTGGTGTCATCCAATAGTAGAAGAAATCATGATCATGATAGCAGAT
TGAGAAAAGTTTTAGGACGAATGAAGGACAACAGAGTTACATTAAATGCT
GACAAATGTGAATTTAGCAAGGACAGAGTAGAGTCTTTGGAATTTGCTAT
ATTATCAGAAGGATAAAGCCACTAAACGAACGTGTAGAATCAATAAACGT
TTCCCCTAAAACCCACAAAATGTTACAGAGCTTAGACGCTTCCTAGGAAT
GGCACAACAACTATCTCGTTTTTGTCCAAGATTGTCTAAATCAGCTGAAC
CACTTCAAGGATTGCTTAGTGActgaagatcacacaaaaacgTTTAATCG
AGGTTAGAAAAAGTGTTATGGGAAGTCCTGGGGACAGATGGGAATCTAAT
CAACGGAATAAGTGTAATACTATACCAGAAACATAAATACGATTGGAAGT
CTGTTGATTGTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063977-exon-scaffold_404-1491911889:524888..525951 | TCONS_00063977-exon-scaffold_404-1491911889:524888..525951 | Clytia hemisphaerica | exon |
| TCONS_00063977-exon-scaffold_404-1510915933:524888..525951 | TCONS_00063977-exon-scaffold_404-1510915933:524888..525951 | Clytia hemisphaerica | exon |
| TCONS_00063977-exon-scaffold_404-1575043694:524888..525951 | TCONS_00063977-exon-scaffold_404-1575043694:524888..525951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:524888..525951 . |
Blast
The following BLAST results are available for this feature:
|
