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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063981 ID=TCONS_00063981|Name=TCONS_00063981|organism=Clytia hemisphaerica|type=transcript|length=2435bp
AATTTTCATACAAATTTGCATCcagaaaaaaagacaatttgAGGCAGAAG
TCTTAGAAGAACTTAGAAGATGCAAAATTTAGGCAGCTTTTTAGCTTCCT
GatttattaaattaaatttcctCTAAAGTCAAGAATTTTCTAGTCGCAAA
ATATTTTGACATTAAAGTACATTTTTCAGCAACGGGGTAAAAAGTAAACT
TAATTGTTCTATTTTATCAGGAAACTCTACAAAAAGATGTCGAGAGCATC
AAAAAATCAATGGAAACACTCCAAAAATCTATAACATTCGCCAACGACAA
CCTTTCAAACATTTACAAAgagataaaagaaataaaaaatttaataatgg
ttaaaaaacaaaaacaaaaaacaacatcacCAATAAAACCGAACAACAAA
CCCCATCAAAACAATTCCCAATCCGTATGTAGTGGTAGTGGTAGTCAGCA
GCCAGTGGAGCCAATGGCTAATGTAGAGATCCTGGTAGAATGTCGTGATG
ATGTAGAAAGTCAAACCCCTCTTGATATTGATATTAATTTGAGCCCATTA
CTGTCACCAGTCGAAGAGACAATGCCCATTTTATTCGAAGATCAAATTTT
ACATGACaataacaatgaaaatgacATATCAATTTTCTCAGataatcaaa
ataatgaaaatgaaaatctacaaaTCGAAGATGAAAGCCCTCTCCCACCt
gcgaaaaaaagaagaacagcTAACCGGGCCCAAacatttatcaaaaaaga
aCTGGAGAGGGTCTTCACTGAGACTGATTTAGCATGCCATCGCTACACAT
ATCAGTCGAGAAAATCGAACAAAGATGGCCAAAGGAAAATTTACCAACCC
CTTTCTCCTACTCGCGTGAGTAGGATCGAGCAAAGGGCATCAAAGGCTCA
TCCTCATGATTATGAGAagttaaaacaacaaaaaggtGGTGTGGCAGAGA
CATTCAATTCGAAATgtcgaaaagttgaaaagaaaattaataacGATAAC
GAATAGATACTAAATCGCTACTCTCGGGTGCTTTATAAACGTACATGCAT
GTTTAACAATTTTGACAAACATtttttactcaatttcaagTTACCTACTA
CCTTATACTACCTTGCCTATTTTTGTTTCTGACGCGAAATATCTATCTTT
GACGATTGAGGTTTTATCTACACAAAATTCCCATTACCTACCCCTAGCCT
CACTGAAGACATCATTCAATTAGATTTTTATACATTTATTTTCGACCATG
TACGTTTATTCGCTACTATACGCAGAGGCGGAGCCACGAGTTTTCGGGTA
GGGGGGcgagattggaaaaattttgaccttttttaggGGAAAATTTCAGA
CAGTATTTTCCTCTTAACTTAAGCGCCGCAGTTTGAATAGCTTAAATAAT
GGCTTGGAAAGGTCAAAGTTAGCGAGAATAAAGTTCCAAAAAGTGGCTCC
GCCACTGATACGTTTATTAGGAACTCGAGAGTACTTATTTGTGCTTACAT
AATTATAGGGGGAGAGGTAAGTAGTGACAacctctcaaaaaattaattat
aaatGGTCATAAAATTATATTGTGAATTCGAAatagacccccccccccca
aaaaaaaacttaaGCACAAATATTATTACTTTCTCAGGGATTTCTCTAAG
CAATTTTTTATCATCTTATACCAAAATACTCAATTCAAGatcaaatattt
cacttttcaatTACGTTCGtgttttctcaatttaaatatACAAAAAGGCT
CATctaaaagtgcttagaaaaatccctgagTTCTAGTATCTAACGTTCGT
Ttataatattcttaaaattttccgaatttttacgatttttaaaatgattt
ttaggACCCTAGGGGGTGGAACCCAAATTTAGAGGCAGGGTGGGGTGATG
GGACCCGAGAGGATCTCTTTTGTAAGGAGACCTTTACCTTGGGGACCCTG
AAACGCCACCCGTCCTGAAAGAAAGTGGAAAACTCCCGAAGGCCCAAATG
TTTGTGATGTCTCTCTTCGGTCACCGATCTCCGATTGGAAGCCTGAGCCC
TCGTTCCTGTCAAGTAACTTAGCAAACGCTGGGTGAACCTCGACGTGGGC
CCTGTTACGCCGAAAAGAGGGGAGAAGTACCTTGGAGGGGCAAGTCTGTC
TGACGACCCAAATCTTTCTGTGCTGTAGCTACCGGGGAGCAAGGCTTTGC
CTCCCAATAACTTTTTTGAAGTAATTTGTTCCTAAAATTGAATAATTTCT
CTTTAAATACTGCCTTTATTtgaatgattttgtttttttttagtgcgttt
ttagccaatctagagctCTAGAGCATGGTTGGCCCTCGTGGTATCACTAA
ACTTGAGGCCCCCTaatatcaaaatgcttcctacgtacggccgaggggta
aatcactaaaatttaGGTGTaggagattttgattt Run BLAST on NCBI protein sequence of TCONS_00063981-protein >TCONS_00063981-protein ID=TCONS_00063981-protein|Name=TCONS_00063981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
METLQKSITFANDNLSNIYKEIKEIKNLIMVKKQKQKTTSPIKPNNKPHQ
NNSQSVCSGSGSQQPVEPMANVEILVECRDDVESQTPLDIDINLSPLLSP
VEETMPILFEDQILHDNNNENDISIFSDNQNNENENLQIEDESPLPPAKK
RRTANRAQTFIKKELERVFTETDLACHRYTYQSRKSNKDGQRKIYQPLSP
TRVSRIEQRASKAHPHDYEKLKQQKGGVAETFNSKCRKVEKKINNDNE Run BLAST on NCBI transcript from alignment at scaffold_404:657165..659599 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063981 ID=TCONS_00063981|Name=TCONS_00063981|organism=Clytia hemisphaerica|type=transcript|length=2435bp|location=Sequence derived from alignment at scaffold_404:657165..659599 (Clytia hemisphaerica)
aaatcaaaatctcctACACCtaaattttagtgatttacccctcggccgta
cgtaggaagcattttgatattAGGGGGCCTCAAGTTTAGTGATACCACGA
GGGCCAACCATGCTCTAGagctctagattggctaaaaacgcactaaaaaa
aaacaaaatcattcaAATAAAGGCAGTATTTAAAGAGAAATTATTCAATT
TTAGGAACAAATTACTTCAAAAAAGTTATTGGGAGGCAAAGCCTTGCTCC
CCGGTAGCTACAGCACAGAAAGATTTGGGTCGTCAGACAGACTTGCCCCT
CCAAGGTACTTCTCCCCTCTTTTCGGCGTAACAGGGCCCACGTCGAGGTT
CACCCAGCGTTTGCTAAGTTACTTGACAGGAACGAGGGCTCAGGCTTCCA
ATCGGAGATCGGTGACCGAAGAGAGACATCACAAACATTTGGGCCTTCGG
GAGTTTTCCACTTTCTTTCAGGACGGGTGGCGTTTCAGGGTCCCCAAGGT
AAAGGTCTCCTTACAAAAGAGATCCTCTCGGGTCCCATCACCCCACCCTG
CCTCTAAATTTGGGTTCCACCCCCTAGGGTcctaaaaatcattttaaaaa
tcgtaaaaattcggaaaattttaagaatattataAACGAACGTTAGATAC
TAGAActcagggatttttctaagcacttttagATGAGCCTTTTTGTatat
ttaaattgagaaaacaCGAACGTAattgaaaagtgaaatatttgatCTTG
AATTGAGTATTTTGGTATAAGATGATAAAAAATTGCTTAGAGAAATCCCT
GAGAAAGTAATAATATTTGTGCttaagtttttttttggggggggggggtc
tatTTCGAATTCACAATATAATTTTATGACCatttataattaattttttg
agaggtTGTCACTACTTACCTCTCCCCCTATAATTATGTAAGCACAAATA
AGTACTCTCGAGTTCCTAATAAACGTATCAGTGGCGGAGCCACTTTTTGG
AACTTTATTCTCGCTAACTTTGACCTTTCCAAGCCATTATTTAAGCTATT
CAAACTGCGGCGCTTAAGTTAAGAGGAAAATACTGTCTGAAATTTTCCcc
taaaaaaggtcaaaatttttccaatctcgCCCCCCTACCCGAAAACTCGT
GGCTCCGCCTCTGCGTATAGTAGCGAATAAACGTACATGGTCGAAAATAA
ATGTATAAAAATCTAATTGAATGATGTCTTCAGTGAGGCTAGGGGTAGGT
AATGGGAATTTTGTGTAGATAAAACCTCAATCGTCAAAGATAGATATTTC
GCGTCAGAAACAAAAATAGGCAAGGTAGTATAAGGTAGTAGGTAActtga
aattgagtaaaaaATGTTTGTCAAAATTGTTAAACATGCATGTACGTTTA
TAAAGCACCCGAGAGTAGCGATTTAGTATCTATTCGTTATCgttattaat
tttcttttcaacttttcgacATTTCGAATTGAATGTCTCTGCCACACCac
ctttttgttgttttaactTCTCATAATCATGAGGATGAGCCTTTGATGCC
CTTTGCTCGATCCTACTCACGCGAGTAGGAGAAAGGGGTTGGTAAATTTT
CCTTTGGCCATCTTTGTTCGATTTTCTCGACTGATATGTGTAGCGATGGC
ATGCTAAATCAGTCTCAGTGAAGACCCTCTCCAGttcttttttgataaat
gtTTGGGCCCGGTTAgctgttcttctttttttcgcaGGTGGGAGAGGGCT
TTCATCTTCGAtttgtagattttcattttcattattttgattatCTGAGA
AAATTGATATgtcattttcattgttattGTCATGTAAAATTTGATCTTCG
AATAAAATGGGCATTGTCTCTTCGACTGGTGACAGTAATGGGCTCAAATT
AATATCAATATCAAGAGGGGTTTGACTTTCTACATCATCACGACATTCTA
CCAGGATCTCTACATTAGCCATTGGCTCCACTGGCTGCTGACTACCACTA
CCACTACATACGGATTGGGAATTGTTTTGATGGGGTTTGTTGTTCGGTTT
TATTGgtgatgttgttttttgtttttgttttttaaccattattaaatttt
ttatttcttttatctcTTTGTAAATGTTTGAAAGGTTGTCGTTGGCGAAT
GTTATAGATTTTTGGAGTGTTTCCATTGATTTTTTGATGCTCTCGACATC
TTTTTGTAGAGTTTCCTGATAAAATAGAACAATTAAGTTTACTTTTTACC
CCGTTGCTGAAAAATGTACTTTAATGTCAAAATATTTTGCGACTAGAAAA
TTCTTGACTTTAGaggaaatttaatttaataaatCAGGAAGCTAAAAAGC
TGCCTAAATTTTGCATCTTCTAAGTTCTTCTAAGACTTCTGCCTcaaatt
gtctttttttctgGATGCAAATTTGTATGAAAATT Coding sequence (CDS) from alignment at scaffold_404:657165..659599 >TCONS_00063981 ID=TCONS_00063981|Name=TCONS_00063981|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_404:657165..659599 (Clytia hemisphaerica)
CTATTCGTTATCgttattaattttcttttcaacttttcgacATTTCGAAT
TGAATGTCTCTGCCACACCacctttttgttgttttaactTCTCATAATCA
TGAGGATGAGCCTTTGATGCCCTTTGCTCGATCCTACTCACGCGAGTAGG
AGAAAGGGGTTGGTAAATTTTCCTTTGGCCATCTTTGTTCGATTTTCTCG
ACTGATATGTGTAGCGATGGCATGCTAAATCAGTCTCAGTGAAGACCCTC
TCCAGttcttttttgataaatgtTTGGGCCCGGTTAgctgttcttctttt
tttcgcaGGTGGGAGAGGGCTTTCATCTTCGAtttgtagattttcatttt
cattattttgattatCTGAGAAAATTGATATgtcattttcattgttattG
TCATGTAAAATTTGATCTTCGAATAAAATGGGCATTGTCTCTTCGACTGG
TGACAGTAATGGGCTCAAATTAATATCAATATCAAGAGGGGTTTGACTTT
CTACATCATCACGACATTCTACCAGGATCTCTACATTAGCCATTGGCTCC
ACTGGCTGCTGACTACCACTACCACTACATACGGATTGGGAATTGTTTTG
ATGGGGTTTGTTGTTCGGTTTTATTGgtgatgttgttttttgtttttgtt
ttttaaccattattaaattttttatttcttttatctcTTTGTAAATGTTT
GAAAGGTTGTCGTTGGCGAATGTTATAGATTTTTGGAGTGTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063981-exon-scaffold_404-1491911889:657165..659599 | TCONS_00063981-exon-scaffold_404-1491911889:657165..659599 | Clytia hemisphaerica | exon |
| TCONS_00063981-exon-scaffold_404-1510915933:657165..659599 | TCONS_00063981-exon-scaffold_404-1510915933:657165..659599 | Clytia hemisphaerica | exon |
| TCONS_00063981-exon-scaffold_404-1575043694:657165..659599 | TCONS_00063981-exon-scaffold_404-1575043694:657165..659599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:657165..659599 . |
Blast
The following BLAST results are available for this feature:
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