TCONS_00063995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063995
Unique NameTCONS_00063995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063995 ID=TCONS_00063995|Name=TCONS_00063995|organism=Clytia hemisphaerica|type=transcript|length=810bp
ctagtttttccgacccttacagtgcattttaaacatattggaaaaggtac
ccttaggacccgcacatacccgtcggtccttttgcccagctgcccccccg
gGTGCTAAAGCTTATCATGAATAACAAAAAAGTGAATCTCGAATAAATGA
ACACTGACAAATCCTTCAACCCTAAAAGTGCCGTTAAAACTTcaattcaa
tgaaaatggcatGAACCATTCTTCGGTCTTAAAATATTGGCTATGGTCCC
TCGTAGCGAGTAACAAACTCTTCTTCGTGGAATATAACAGATATACggca
agatttttttcattttggcaTTCGGTGTGGTACAGGGTCGATTTGAATga
gcaatatttttcaataatgtTGATTACGCTTATTTGTTTCAATGAAGAGT
TCCAGCACAAGCCATTCTCCGCAGAAACTTTTTCTCACACGAGTTCAACG
TTCTGTGATCATCCTTAGGTACAAAACCACGCTTCAAAGAATTGTTACTT
AAACCATCCGAAGATACGCTGATACTTTTCACCAGTGTGGTATGCAATAG
ACGATCTTTGTGTGAAAATGATAGACTGGTGATCGAGAGGCTTTTATTCC
TGTTCAAACTCATGAATTGGTTCATTCTTCTTTTTAAGATTGATCAGATG
AAGAAAGATTTCTCGCTTTTTCTTGTATCTTTTTGTTCCTTTGATAGTGC
TTTTATTCTTTATGCCGCCTTTACTTCGTCCAAACAGTTCGTAATGTTAT
GACCAATGTCTTCTTTCACTTTCCGTGTGCAATGTCttctaaatttaatt
tcaaatgtCT
Run BLAST on NCBI

transcript from alignment at scaffold_404:875056..875865

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063995 ID=TCONS_00063995|Name=TCONS_00063995|organism=Clytia hemisphaerica|type=transcript|length=810bp|location=Sequence derived from alignment at scaffold_404:875056..875865 (Clytia hemisphaerica)
AGacatttgaaattaaatttagaaGACATTGCACACGGAAAGTGAAAGAA
GACATTGGTCATAACATTACGAACTGTTTGGACGAAGTAAAGGCGGCATA
AAGAATAAAAGCACTATCAAAGGAACAAAAAGATACAAGAAAAAGCGAGA
AATCTTTCTTCATCTGATCAATCTTAAAAAGAAGAATGAACCAATTCATG
AGTTTGAACAGGAATAAAAGCCTCTCGATCACCAGTCTATCATTTTCACA
CAAAGATCGTCTATTGCATACCACACTGGTGAAAAGTATCAGCGTATCTT
CGGATGGTTTAAGTAACAATTCTTTGAAGCGTGGTTTTGTACCTAAGGAT
GATCACAGAACGTTGAACTCGTGTGAGAAAAAGTTTCTGCGGAGAATGGC
TTGTGCTGGAACTCTTCATTGAAACAAATAAGCGTAATCAacattattga
aaaatattgctcATTCAAATCGACCCTGTACCACACCGAAtgccaaaatg
aaaaaaatcttgccGTATATCTGTTATATTCCACGAAGAAGAGTTTGTTA
CTCGCTACGAGGGACCATAGCCAATATTTTAAGACCGAAGAATGGTTCat
gccattttcattgaattgAAGTTTTAACGGCACTTTTAGGGTTGAAGGAT
TTGTCAGTGTTCATTTATTCGAGATTCACTTTTTTGTTATTCATGATAAG
CTTTAGCACccgggggggcagctgggcaaaaggaccgacgggtatgtgcg
ggtcctaagggtaccttttccaatatgtttaaaatgcactgtaagggtcg
gaaaaactag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040120XLOC_040120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063995-exon-scaffold_404-1491911889:875056..875865TCONS_00063995-exon-scaffold_404-1491911889:875056..875865Clytia hemisphaericaexon
TCONS_00063995-exon-scaffold_404-1510915933:875056..875865TCONS_00063995-exon-scaffold_404-1510915933:875056..875865Clytia hemisphaericaexon
TCONS_00063995-exon-scaffold_404-1575043694:875056..875865TCONS_00063995-exon-scaffold_404-1575043694:875056..875865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:875056..875865 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09284	0.891833	1.18701	2.17212	3.18937	2.72653	2.41992	2.23998	1.89474	0.784234	1.59161	0.688796	12.2856	9.79388	9.80001	8.14921	6.68215	13.4319	0	0.668013	0.647436	1.17724	4.18432	2.63115	2.8917	1.72558	57.0426	2.08264	1.94045	0.69088
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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