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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063997 ID=TCONS_00063997|Name=TCONS_00063997|organism=Clytia hemisphaerica|type=transcript|length=1102bp
TTTTTACATTTCATACTTCGACGTAGGAGAGAGCAGTGCAAAATTGATTG
AGAAAAACCATAGCATTATTTAGCATTTTGTTACAATACCATCGCTGCAC
AATTCACAAGAGTTTGAAGGTACCCGATTACTAAATTGAACCTCGTAAAG
AATTTCATTTAAAAGTGGtatgaaaaaagaaagatgTTGAGCCAAAAGTT
CCAACAAAAGTCAAAGTCATTAGATGAATCTGCCGACACGAGCGTTAAGA
GATCATTACCAAAGAAGCAAATCTCTATGACGGACCCATTGCAGAGCAAA
CGTCAGAACTTCCTACGATCGCACATCGATTTGGATTCAAGCTATAACAT
GTCGGGATCACCTCCAGGACATATGGATACCGTGCACtccaaaatgacaa
aagatgCTACTAACTTCACTGCCAAACAAGGACAATGCTCCAATGCTGAA
AAAGGTCTTCTTCGCAGACTCATGCATGTTCAATAAGCAATAATGAGAGA
TCGACTCGCTAGAAATAGCTAGCCTAAACCATTCACTGATTGTGGAATAG
ATTCAATGGAAAACTTTAGCTAGCAAAATTTACTTTGTCAATTGACACTT
GGCTAAAAAAAGTAGACGAAATAAGGGGCAAACTCTGGGCAAACCTTTGC
AAAGGGGCAACAACATCAAACGTTAGCGAGCAAAAACATTATCTTATCAA
ATAAATGGTCAGATGAATGGTTAGATAAAGACATTCCTATCAAGGATTAA
TCAACATTACGTCGAAGTGCgttcggaacaagaaaaactgAATTCAGTGT
ACATAACAAATATATACTTTCTTAAACATTTTCGTAGAATAACCCAATAC
AGCCTAATTCTTATCAATTTGAGTTAGATATTTATATTCTTTAGTCTAGT
ACCTATATTTTTATGACGTGTAAATTATATATTACATAATATGTTTATTA
GTGTATATTATTGTCCAAGAATGGAAAAAAAACTAATGCAGtatcaaaga
aattcaaaatgaaatttccaGGTTGCTTTTGAGGATCCTTATTTGTATTG
AGCAACCTTTTGTTACTTTCTCATCTGAATTATaactaaaattaatttga
aC Run BLAST on NCBI protein sequence of TCONS_00063997-protein >TCONS_00063997-protein ID=TCONS_00063997-protein|Name=TCONS_00063997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MLSQKFQQKSKSLDESADTSVKRSLPKKQISMTDPLQSKRQNFLRSHIDL
DSSYNMSGSPPGHMDTVHSKMTKDATNFTAKQGQCSNAEKGLLRRLMHVQ Run BLAST on NCBI transcript from alignment at scaffold_404:906220..907321 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063997 ID=TCONS_00063997|Name=TCONS_00063997|organism=Clytia hemisphaerica|type=transcript|length=1102bp|location=Sequence derived from alignment at scaffold_404:906220..907321 (Clytia hemisphaerica)
GttcaaattaattttagttATAATTCAGATGAGAAAGTAACAAAAGGTTG
CTCAATACAAATAAGGATCCTCAAAAGCAACCtggaaatttcattttgaa
tttctttgataCTGCATTAGTTTTTTTTCCATTCTTGGACAATAATATAC
ACTAATAAACATATTATGTAATATATAATTTACACGTCATAAAAATATAG
GTACTAGACTAAAGAATATAAATATCTAACTCAAATTGATAAGAATTAGG
CTGTATTGGGTTATTCTACGAAAATGTTTAAGAAAGTATATATTTGTTAT
GTACACTGAATTcagtttttcttgttccgaacGCACTTCGACGTAATGTT
GATTAATCCTTGATAGGAATGTCTTTATCTAACCATTCATCTGACCATTT
ATTTGATAAGATAATGTTTTTGCTCGCTAACGTTTGATGTTGTTGCCCCT
TTGCAAAGGTTTGCCCAGAGTTTGCCCCTTATTTCGTCTACTTTTTTTAG
CCAAGTGTCAATTGACAAAGTAAATTTTGCTAGCTAAAGTTTTCCATTGA
ATCTATTCCACAATCAGTGAATGGTTTAGGCTAGCTATTTCTAGCGAGTC
GATCTCTCATTATTGCTTATTGAACATGCATGAGTCTGCGAAGAAGACCT
TTTTCAGCATTGGAGCATTGTCCTTGTTTGGCAGTGAAGTTAGTAGcatc
ttttgtcattttggaGTGCACGGTATCCATATGTCCTGGAGGTGATCCCG
ACATGTTATAGCTTGAATCCAAATCGATGTGCGATCGTAGGAAGTTCTGA
CGTTTGCTCTGCAATGGGTCCGTCATAGAGATTTGCTTCTTTGGTAATGA
TCTCTTAACGCTCGTGTCGGCAGATTCATCTAATGACTTTGACTTTTGTT
GGAACTTTTGGCTCAAcatctttcttttttcataCCACTTTTAAATGAAA
TTCTTTACGAGGTTCAATTTAGTAATCGGGTACCTTCAAACTCTTGTGAA
TTGTGCAGCGATGGTATTGTAACAAAATGCTAAATAATGCTATGGTTTTT
CTCAATCAATTTTGCACTGCTCTCTCCTACGTCGAAGTATGAAATGTAAA
AA Coding sequence (CDS) from alignment at scaffold_404:906220..907321 >TCONS_00063997 ID=TCONS_00063997|Name=TCONS_00063997|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_404:906220..907321 (Clytia hemisphaerica)
TTATTGAACATGCATGAGTCTGCGAAGAAGACCTTTTTCAGCATTGGAGC
ATTGTCCTTGTTTGGCAGTGAAGTTAGTAGcatcttttgtcattttggaG
TGCACGGTATCCATATGTCCTGGAGGTGATCCCGACATGTTATAGCTTGA
ATCCAAATCGATGTGCGATCGTAGGAAGTTCTGACGTTTGCTCTGCAATG
GGTCCGTCATAGAGATTTGCTTCTTTGGTAATGATCTCTTAACGCTCGTG
TCGGCAGATTCATCTAATGACTTTGACTTTTGTTGGAACTTTTGGCTCAA
cat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063997-exon-scaffold_404-1491911889:906220..907321 | TCONS_00063997-exon-scaffold_404-1491911889:906220..907321 | Clytia hemisphaerica | exon |
| TCONS_00063997-exon-scaffold_404-1510915933:906220..907321 | TCONS_00063997-exon-scaffold_404-1510915933:906220..907321 | Clytia hemisphaerica | exon |
| TCONS_00063997-exon-scaffold_404-1575043694:906220..907321 | TCONS_00063997-exon-scaffold_404-1575043694:906220..907321 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:906220..907321 . |
Blast
The following BLAST results are available for this feature:
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