TCONS_00064003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064003
Unique NameTCONS_00064003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064003 ID=TCONS_00064003|Name=TCONS_00064003|organism=Clytia hemisphaerica|type=transcript|length=306bp
AAACTGTGCAACACGGTTCGTTCGTCGCGCGTTCGTCGTTTGTGTTGCGA
AGAGAAACGTTTGTCCCGCGCGTCCAATCCCTTATAACTCGATTACGTGA
CAATCCATCAGCTCTATTACCGGTGCGTCTGGCCAGTGGTCGCATGATGA
ATTGTTCGTCCGTCCAGGATATGAGTCGTGTGAGGTCCACACGTACCGTT
CCTCTCCTTCGGACCCGTCTTAAGATTCTTTGATGCTCCCTCTCCACTAT
GCTGCCAGCTCTCGCAAATAGTTCCTGATAGTGTGGATTGTTCACGAATC
CTCCAA
Run BLAST on NCBI

transcript from alignment at scaffold_405:2752..3057

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064003 ID=TCONS_00064003|Name=TCONS_00064003|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at scaffold_405:2752..3057 (Clytia hemisphaerica)
TTGGAGGATTCGTGAACAATCCACACTATCAGGAACTATTTGCGAGAGCT
GGCAGCATAGTGGAGAGGGAGCATCAAAGAATCTTAAGACGGGTCCGAAG
GAGAGGAACGGTACGTGTGGACCTCACACGACTCATATCCTGGACGGACG
AACAATTCATCATGCGACCACTGGCCAGACGCACCGGTAATAGAGCTGAT
GGATTGTCACGTAATCGAGTTATAAGGGATTGGACGCGCGGGACAAACGT
TTCTCTTCGCAACACAAACGACGAACGCGCGACGAACGAACCGTGTTGCA
CAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040128XLOC_040128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064003-exon-scaffold_405-1491911889:2752..3057TCONS_00064003-exon-scaffold_405-1491911889:2752..3057Clytia hemisphaericaexon
TCONS_00064003-exon-scaffold_405-1510915933:2752..3057TCONS_00064003-exon-scaffold_405-1510915933:2752..3057Clytia hemisphaericaexon
TCONS_00064003-exon-scaffold_405-1575043694:2752..3057TCONS_00064003-exon-scaffold_405-1575043694:2752..3057Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_405supercontigscaffold_405:2752..3057 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.645338	0.413831	0.809739	3.59495	0.446873	4.64303	4.25592	1.12968	6.64728	2.36199	1.00014	3.46029	2.23286	6.37808	12.0223	11.8036	14.4813	7.93183	7.84452	1.77193	0	7.64998	5.23407	0	0.350221	15.6135	10.9377	0	0.826628
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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