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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064011 ID=TCONS_00064011|Name=TCONS_00064011|organism=Clytia hemisphaerica|type=transcript|length=1911bp
GGATAACGACGTGGTCCAAGACGTTTTTTCTGCTTGACCAAAGAACTTTT
TGTGACATTTTAGGGTAACTTAATACTTCTCACAATGGTATATTGCAATT
CTAGTTtcttttggtgattttttcaGGACTTCTGCTTCAAATGTTTCAAC
TGCCATTTTTTTGTCGTTTATCGGTATCTTGCATTTTTTCTTTgacggaa
atttgaaaattccttTCGATCGTACTCTTGAACAATCATAAATGGGACCA
AGTGAGATGCTCGTTATCTGTGCCACCATGTATAACAAAATGGTGAGCAT
AAGTAATTTCGAGGAGAAATTTGAAACTCTTATTTTTCTTCTCTGCTTAT
CTGTTGTGACATGTCCAACTTCTTTGTCATCAACGAATTTGATATCTGGT
TGTGGTTTGTTTTGTGGCTGTTCTACGGTTTGATTATCGTCATTGATTAt
gccttcttcttcttcgttctCTTCAGCGCCTTCGTTTTCTTCCATGTCTT
CAATTTCTTCAACATCTTCAAAGCTCTGTCAGTGATTTTCTTCATACAGT
TTACATGTATTGGTGACTGATGTGTTTTACCTCGTTCATCTGTAATTCTA
AACAGCACTGGAGACAATCTATCCTTGAGAATATATGGGCCTTGGTACTT
AACTGATAACTTCGGACTGAGTCCTTTTGTTTTCGACTTTTTACTAATCA
TTACTTTATCTCCTACTTGAAAGTTTGTTTCTCCTGCAGTCtcgtcatat
tttccttttgtcTTTTTACCTGAAGCTTCGAGTCTGTCATTAACATTTTG
TCTAGCTATTGTAGCTGACTGTAAAAGTTGATATCTGTATTCTTCGATTG
TCGGTGCTACCTTTGACGGTTTAAATAGAGATACATCCGGGGGCATTGTT
GCTTGTCTTCCATACACCAAAAAAGAAAggtgtttcttttgttgaacTTG
CCACTGTTGTTCGAATCGATAAAAGTACACTCTTTCAACCATGCCATTTT
TTGTGGGTGGTAAGACGAGGTGTCCAGCTTTTTCATACCTGTCATTACAC
AAAGTTCAGTCATTAGGTTCGACATAAAATTCTTTCCTCGATCGGTCAAC
ATTTGACATGGAACACCATGGCGGCATATGAGCTCATTGAGTTCTGGCAA
GTAGATATGCTTCTGTATGAGGGAGTGCCCAAGCTTCTACCCATTTGGTA
AAATGATCAACGGCCACCATTATATATTTGTTTTTGGATTCTGTGAGTGG
AAAAGGGCCGCATATGTCTACACCGATCCTCTCGAAAGGTCCTGATGCAT
GCGCAAAAATTTCCATTCttgctttctttgttttgggaTTAATCTTGTGT
GTAGAACAGATTTCACATGACTCTATCAAATTCTTACAATCTTTGTACAT
TCCTCTCAagtaatatttttctttaatcttCTGATATGTCTTTTGTAGGC
TAAAATGTCCTCCTGTTACAGGGTCATGAACTGCTGTTAGGATTTTCTGA
ACTAACTTATCTGGAATTACTAGTTTTTCCATGTTCTcactttctttact
ttttgttGAAAGGTAAAATAGTACTCCGTCGTCGTCAAGGAAATAATCAT
CTGCTATCGCCAATGTCTTCATTTGATCTTCTTGATCTCCCTCCAAGATG
TCTTTTTCTAGATAACGGATAATGTTTCTTATGTCAGcttggttttcttg
aatttctcttATGTTTTGTGTTTTAAACTGCGTGGTTGTCAGCATGTTGA
TAGTTTCAAATTTGGGATGACGTGATAGAACGTCTGCATTAAAGTGTACC
CTTCCCGGACGATGTTTAATGACGAAATGACGAAAGCTAAACGTCCTTTC
GGATTTTTGAGGTTCATCAGCCATTTCAAGGAATGATGGTCCGTATGAAC
CGTAAATGGTC Run BLAST on NCBI protein sequence of TCONS_00064011-protein >TCONS_00064011-protein ID=TCONS_00064011-protein|Name=TCONS_00064011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
TIYGSYGPSFLEMADEPQKSERTFSFRHFVIKHRPGRVHFNADVLSRHPK
FETINMLTTTQFKTQNIREIQENQADIRNIIRYLEKDILEGDQEDQMKTL
AIADDYFLDDDGVLFYLSTKSKESENMEKLVIPDKLVQKILTAVHDPVTG
GHFSLQKTYQKIKEKYYLRGMYKDCKNLIESCEICSTHKINPKTKKARME
IFAHASGPFERIGVDICGPFPLTESKNKYIMVAVDHFTKWVEAWALPHTE
AYLLARTQ Run BLAST on NCBI transcript from alignment at scaffold_405:25707..27617 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064011 ID=TCONS_00064011|Name=TCONS_00064011|organism=Clytia hemisphaerica|type=transcript|length=1911bp|location=Sequence derived from alignment at scaffold_405:25707..27617 (Clytia hemisphaerica)
GACCATTTACGGTTCATACGGACCATCATTCCTTGAAATGGCTGATGAAC
CTCAAAAATCCGAAAGGACGTTTAGCTTTCGTCATTTCGTCATTAAACAT
CGTCCGGGAAGGGTACACTTTAATGCAGACGTTCTATCACGTCATCCCAA
ATTTGAAACTATCAACATGCTGACAACCACGCAGTTTAAAACACAAAACA
TaagagaaattcaagaaaaccaagCTGACATAAGAAACATTATCCGTTAT
CTAGAAAAAGACATCTTGGAGGGAGATCAAGAAGATCAAATGAAGACATT
GGCGATAGCAGATGATTATTTCCTTGACGACGACGGAGTACTATTTTACC
TTTCaacaaaaagtaaagaaagtgAGAACATGGAAAAACTAGTAATTCCA
GATAAGTTAGTTCAGAAAATCCTAACAGCAGTTCATGACCCTGTAACAGG
AGGACATTTTAGCCTACAAAAGACATATCAGaagattaaagaaaaatatt
actTGAGAGGAATGTACAAAGATTGTAAGAATTTGATAGAGTCATGTGAA
ATCTGTTCTACACACAAGATTAAtcccaaaacaaagaaagcaaGAATGGA
AATTTTTGCGCATGCATCAGGACCTTTCGAGAGGATCGGTGTAGACATAT
GCGGCCCTTTTCCACTCACAGAATCCAAAAACAAATATATAATGGTGGCC
GTTGATCATTTTACCAAATGGGTAGAAGCTTGGGCACTCCCTCATACAGA
AGCATATCTACTTGCCAGAACTCAATGAGCTCATATGCCGCCATGGTGTT
CCATGTCAAATGTTGACCGATCGAGGAAAGAATTTTATGTCGAACCTAAT
GACTGAACTTTGTGTAATGACAGGTATGAAAAAGCTGGACACCTCGTCTT
ACCACCCACAAAAAATGGCATGGTTGAAAGAGTGTACTTTTATCGATTCG
AACAACAGTGGCAAgttcaacaaaagaaacaccTTTCTTTTTTGGTGTAT
GGAAGACAAGCAACAATGCCCCCGGATGTATCTCTATTTAAACCGTCAAA
GGTAGCACCGACAATCGAAGAATACAGATATCAACTTTTACAGTCAGCTA
CAATAGCTAGACAAAATGTTAATGACAGACTCGAAGCTTCAGGTAAAAAg
acaaaaggaaaatatgacgaGACTGCAGGAGAAACAAACTTTCAAGTAGG
AGATAAAGTAATGATTAGTAAAAAGTCGAAAACAAAAGGACTCAGTCCGA
AGTTATCAGTTAAGTACCAAGGCCCATATATTCTCAAGGATAGATTGTCT
CCAGTGCTGTTTAGAATTACAGATGAACGAGGTAAAACACATCAGTCACC
AATACATGTAAACTGTATGAAGAAAATCACTGACAGAGCTTTGAAGATGT
TGAAGAAATTGAAGACATGGAAGAAAACGAAGGCGCTGAAGagaacgaag
aagaagaaggcaTAATCAATGACGATAATCAAACCGTAGAACAGCCACAA
AACAAACCACAACCAGATATCAAATTCGTTGATGACAAAGAAGTTGGACA
TGTCACAACAGATAAGCAGAGAAGAAAAATAAGAGTTTCAAATTTCTCCT
CGAAATTACTTATGCTCACCATTTTGTTATACATGGTGGCACAGATAACG
AGCATCTCACTTGGTCCCATTTATGATTGTTCAAGAGTACGATCGAaagg
aattttcaaatttccgtcAAAGAAAAAATGCAAGATACCGATAAACGACA
AAAAAATGGCAGTTGAAACATTTGAAGCAGAAGTCCtgaaaaaatcacca
aaagaAACTAGAATTGCAATATACCATTGTGAGAAGTATTAAGTTACCCT
AAAATGTCACAAAAAGTTCTTTGGTCAAGCAGAAAAAACGTCTTGGACCA
CGTCGTTATCC Coding sequence (CDS) from alignment at scaffold_405:25707..27617 >TCONS_00064011 ID=TCONS_00064011|Name=TCONS_00064011|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at scaffold_405:25707..27617 (Clytia hemisphaerica)
ACCATTTACGGTTCATACGGACCATCATTCCTTGAAATGGCTGATGAACC
TCAAAAATCCGAAAGGACGTTTAGCTTTCGTCATTTCGTCATTAAACATC
GTCCGGGAAGGGTACACTTTAATGCAGACGTTCTATCACGTCATCCCAAA
TTTGAAACTATCAACATGCTGACAACCACGCAGTTTAAAACACAAAACAT
aagagaaattcaagaaaaccaagCTGACATAAGAAACATTATCCGTTATC
TAGAAAAAGACATCTTGGAGGGAGATCAAGAAGATCAAATGAAGACATTG
GCGATAGCAGATGATTATTTCCTTGACGACGACGGAGTACTATTTTACCT
TTCaacaaaaagtaaagaaagtgAGAACATGGAAAAACTAGTAATTCCAG
ATAAGTTAGTTCAGAAAATCCTAACAGCAGTTCATGACCCTGTAACAGGA
GGACATTTTAGCCTACAAAAGACATATCAGaagattaaagaaaaatatta
ctTGAGAGGAATGTACAAAGATTGTAAGAATTTGATAGAGTCATGTGAAA
TCTGTTCTACACACAAGATTAAtcccaaaacaaagaaagcaaGAATGGAA
ATTTTTGCGCATGCATCAGGACCTTTCGAGAGGATCGGTGTAGACATATG
CGGCCCTTTTCCACTCACAGAATCCAAAAACAAATATATAATGGTGGCCG
TTGATCATTTTACCAAATGGGTAGAAGCTTGGGCACTCCCTCATACAGAA
GCATATCTACTTGCCAGAACTCAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064011-exon-scaffold_405-1491911889:25707..27617 | TCONS_00064011-exon-scaffold_405-1491911889:25707..27617 | Clytia hemisphaerica | exon |
| TCONS_00064011-exon-scaffold_405-1510915933:25707..27617 | TCONS_00064011-exon-scaffold_405-1510915933:25707..27617 | Clytia hemisphaerica | exon |
| TCONS_00064011-exon-scaffold_405-1575043694:25707..27617 | TCONS_00064011-exon-scaffold_405-1575043694:25707..27617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_405 | supercontig | scaffold_405:25707..27617 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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