TCONS_00064012 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064012
Unique NameTCONS_00064012
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length896

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064012 ID=TCONS_00064012|Name=TCONS_00064012|organism=Clytia hemisphaerica|type=transcript|length=896bp
GTCTGCAGCCACAAAATATGCTCGTCTGCGCTGATCCACTATGTAAGTTC
TATATGGTCTTTGGCTACAGGCTATTTTTGGGCTGTGGTTTAAAATTGAT
CTACTCTGTAGATGTAAGAAGTAAATTTTCTCTGTGTATGGTAGTTTaat
aggaaaatgaaaatagcaTGTTCCGTTATACTGTCTGTTGTAATAAATAA
TGTATGCCGGTACTGAGCACAATTACCTACAGCTATGGCATCTCCTGCGA
TATTTAATGAACTCCCCTGTCTTCGAGCCAATTAGAACTGCTTTCTGGAA
ATGTAGATAATATGAACTGTTCTAGTTTCTGTATACGTGCTCGTGATTTG
CACAAAACGTTCCAAGTATTTATCACATTACTTCTCTCTTGTTGTAGTGC
TAAAGATATGTGTGCTTCCAACAATGCAATTTGGTTTGATGAAGGGGCCA
ATTTTGTTAAGTTTCTTGCTTGTGATAAGAGGTCATCAAACGAAATCTTC
GTTTTCTCCATGTTTTTTGATTACATATCCATCATCCAAGACGTATGATT
TGTCATCTGTAAGTTGTATGGCTCCTCCGAAAAAGTCTGGAACCAGGATA
AAGGATCCGAGTTTTTGGATTTTGTATTTCCCAATTGAATGGAATACTTT
GGCATCATAATTCTTAGGTATCTTCCAGATCAAAATTGAGTTTGGTTTTT
CGATGGGTCTGCATCTTGGTGGAAACACCTTGCAGCTGCTTGCTGTTATT
CCTTGGTGTAAGTCCTCATTACCTCCATAAAGAGATCCTCTGTATTTGGT
TATGTGGTAATGAGTGTACTCGACAATTTCCGTCCGCATCCACCTGCAAT
TGTATCTTTGGTTTGATTTTGTACTCCATGTTAATCCATCTTTGTG
Run BLAST on NCBI

protein sequence of TCONS_00064012-protein

>TCONS_00064012-protein ID=TCONS_00064012-protein|Name=TCONS_00064012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
HKDGLTWSTKSNQRYNCRWMRTEIVEYTHYHITKYRGSLYGGNEDLHQGI
TASSCKVFPPRCRPIEKPNSILIWKIPKNYDAKVFHSIGKYKIQKLGSFI
LVPDFFGGAIQLTDDKSYVLDDGYVIKKHGENEDFV
Run BLAST on NCBI

transcript from alignment at scaffold_405:27684..28579

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064012 ID=TCONS_00064012|Name=TCONS_00064012|organism=Clytia hemisphaerica|type=transcript|length=896bp|location=Sequence derived from alignment at scaffold_405:27684..28579 (Clytia hemisphaerica)
CACAAAGATGGATTAACATGGAGTACAAAATCAAACCAAAGATACAATTG
CAGGTGGATGCGGACGGAAATTGTCGAGTACACTCATTACCACATAACCA
AATACAGAGGATCTCTTTATGGAGGTAATGAGGACTTACACCAAGGAATA
ACAGCAAGCAGCTGCAAGGTGTTTCCACCAAGATGCAGACCCATCGAAAA
ACCAAACTCAATTTTGATCTGGAAGATACCTAAGAATTATGATGCCAAAG
TATTCCATTCAATTGGGAAATACAAAATCCAAAAACTCGGATCCTTTATC
CTGGTTCCAGACTTTTTCGGAGGAGCCATACAACTTACAGATGACAAATC
ATACGTCTTGGATGATGGATATGTAATCAAAAAACATGGAGAAAACGAAG
ATTTCGTTTGATGACCTCTTATCACAAGCAAGAAACTTAACAAAATTGGC
CCCTTCATCAAACCAAATTGCATTGTTGGAAGCACACATATCTTTAGCAC
TACAACAAGAGAGAAGTAATGTGATAAATACTTGGAACGTTTTGTGCAAA
TCACGAGCACGTATACAGAAACTAGAACAGTTCATATTATCTACATTTCC
AGAAAGCAGTTCTAATTGGCTCGAAGACAGGGGAGTTCATTAAATATCGC
AGGAGATGCCATAGCTGTAGGTAATTGTGCTCAGTACCGGCATACATTAT
TTATTACAACAGACAGTATAACGGAACAtgctattttcattttcctattA
AACTACCATACACAGAGAAAATTTACTTCTTACATCTACAGAGTAGATCA
ATTTTAAACCACAGCCCAAAAATAGCCTGTAGCCAAAGACCATATAGAAC
TTACATAGTGGATCAGCGCAGACGAGCATATTTTGTGGCTGCAGAC

Coding sequence (CDS) from alignment at scaffold_405:27684..28579

>TCONS_00064012 ID=TCONS_00064012|Name=TCONS_00064012|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_405:27684..28579 (Clytia hemisphaerica)
CACAAAGATGGATTAACATGGAGTACAAAATCAAACCAAAGATACAATTG
CAGGTGGATGCGGACGGAAATTGTCGAGTACACTCATTACCACATAACCA
AATACAGAGGATCTCTTTATGGAGGTAATGAGGACTTACACCAAGGAATA
ACAGCAAGCAGCTGCAAGGTGTTTCCACCAAGATGCAGACCCATCGAAAA
ACCAAACTCAATTTTGATCTGGAAGATACCTAAGAATTATGATGCCAAAG
TATTCCATTCAATTGGGAAATACAAAATCCAAAAACTCGGATCCTTTATC
CTGGTTCCAGACTTTTTCGGAGGAGCCATACAACTTACAGATGACAAATC
ATACGTCTTGGATGATGGATATGTAATCAAAAAACATGGAGAAAACGAAG
ATTTCGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040137XLOC_040137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064012-exon-scaffold_405-1491911889:27684..28579TCONS_00064012-exon-scaffold_405-1491911889:27684..28579Clytia hemisphaericaexon
TCONS_00064012-exon-scaffold_405-1510915933:27684..28579TCONS_00064012-exon-scaffold_405-1510915933:27684..28579Clytia hemisphaericaexon
TCONS_00064012-exon-scaffold_405-1575043694:27684..28579TCONS_00064012-exon-scaffold_405-1575043694:27684..28579Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064012-proteinTCONS_00064012-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_405supercontigscaffold_405:27684..28579 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0696415	0.0550317	0.0663934	0.124313	0.0435173	0	0	0.068786	0	0.142671	0.322562	0.409096	0.116301	0.198675	0.439169	0.287224	0.04993	0	0	0.107663	0.0554452	0	0	0	0.0573181	0.116796
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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