TCONS_00064095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064095
Unique NameTCONS_00064095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064095 ID=TCONS_00064095|Name=TCONS_00064095|organism=Clytia hemisphaerica|type=transcript|length=394bp
caaaattttggctgatTGTTAAACCCAACCAACTCGAACAAGCACAGGAA
AAGTTTGCTGGCACCGAGATCAAAATAACATCCGATGGTGAACGGCACCT
CGGGGCGGTGATTGGTACGGATGAAAACAAAAGTCAGTACATCAACCAAA
AGATCGACGAATGGACCTAGGAGATCAATCTTCTTGCTAAAATCGCAGCA
ACCTATCCACAAGCAGCCTACTCAGCCTACGTCAGCAGCTACCAACATAA
GCTGACGTACTTCCTACGCACTATCCCAACGATCAATGACGAGTTGAAAA
GAGTCGACGAAGTCGTACGGTACCGACTGATTCCATCACTAACCGGTGGA
TGATGCTTCTCGCTCGTTAGATCTACAGTGAGTTGCATCCGTGG
Run BLAST on NCBI

transcript from alignment at scaffold_407:226839..227232

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064095 ID=TCONS_00064095|Name=TCONS_00064095|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at scaffold_407:226839..227232 (Clytia hemisphaerica)
CCACGGATGCAACTCACTGTAGATCTAACGAGCGAGAAGCATCATCCACC
GGTTAGTGATGGAATCAGTCGGTACCGTACGACTTCGTCGACTCTTTTCA
ACTCGTCATTGATCGTTGGGATAGTGCGTAGGAAGTACGTCAGCTTATGT
TGGTAGCTGCTGACGTAGGCTGAGTAGGCTGCTTGTGGATAGGTTGCTGC
GATTTTAGCAAGAAGATTGATCTCCTAGGTCCATTCGTCGATCTTTTGGT
TGATGTACTGACTTTTGTTTTCATCCGTACCAATCACCGCCCCGAGGTGC
CGTTCACCATCGGATGTTATTTTGATCTCGGTGCCAGCAAACTTTTCCTG
TGCTTGTTCGAGTTGGTTGGGTTTAACAatcagccaaaattttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040183XLOC_040183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064095-exon-scaffold_407-1491911889:226839..227232TCONS_00064095-exon-scaffold_407-1491911889:226839..227232Clytia hemisphaericaexon
TCONS_00064095-exon-scaffold_407-1510915933:226839..227232TCONS_00064095-exon-scaffold_407-1510915933:226839..227232Clytia hemisphaericaexon
TCONS_00064095-exon-scaffold_407-1575043694:226839..227232TCONS_00064095-exon-scaffold_407-1575043694:226839..227232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:226839..227232 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.958858	1.49606	0.994466	0.637294	0.258615	0	0.246553	0.23082	0.550487	1.00085	0	1.14947	1.10428	1.32453	1.19784	1.1686	1.00774	2.12285	1.22314	1.70658	0.556247	1.35659	1.31929	0.199904	0.823587	2.75637	1.31478	0.841904	0.638555	0.650586
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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