|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064140 ID=TCONS_00064140|Name=TCONS_00064140|organism=Clytia hemisphaerica|type=transcript|length=3052bpRun BLAST on NCBI protein sequence of TCONS_00064140-protein >TCONS_00064140-protein ID=TCONS_00064140-protein|Name=TCONS_00064140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp MAEVRPTRKVALITGITGQDGSYLAELLLNKGYEVHGIIRRSSSFNTGRIRun BLAST on NCBI transcript from alignment at scaffold_409:107096..137118- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064140 ID=TCONS_00064140|Name=TCONS_00064140|organism=Clytia hemisphaerica|type=transcript|length=30023bp|location=Sequence derived from alignment at scaffold_409:107096..137118- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_409:107096..137118- >TCONS_00064140 ID=TCONS_00064140|Name=TCONS_00064140|organism=Clytia hemisphaerica|type=CDS|length=12888bp|location=Sequence derived from alignment at scaffold_409:107096..137118- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064140 vs. Swiss-Prot (Human)
Match: GMDS (GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1) HSP 1 Score: 529.635 bits (1363), Expect = 6.214e-179 Identity = 248/356 (69.66%), Postives = 292/356 (82.02%), Query Frame = 3
Query: 243 AEVRPTRKVALITGITGQDGSYLAELLLNKGYEVHGIIRRSSSFNTGRIQNLYENKTAHVTGDLHLHYGDMTDSSCLLKVVSKSQPCEIYNLAAQSHVKVSFDLAEYTADTDAMGTLRLLEAIKTCNLIGKVKFYQASTSEMYGKVREIPQTELTPFHPRSPYGVAKLYAYWIVVNYREAYGLFGCNGILFNHESPRRGETFVTRKITRGVAKISLGLQDELVLGNLDSIRDWGHAKDYVEAMWLMLQQEGADDYVVATNETHSVREFVEKSFGHVGVKIRWEGESENEVGYDDATNTPRVRVSSKFYRPAEVDYLQGDPAKAEAKLGWKRKVPFEELVKEMVESDIELMKANPSA 1310
E+ R VALITGITGQDGSYLAE LL KGYEVHGI+RRSSSFNTGRI++LY+N AH+ G++ LHYGD+TDS+CL+K++++ +P EIYNL AQSHVK+SFDLAEYTAD D +GTLRLL+A+KTC LI VKFYQASTSE+YGKV+EIPQ E TPF+PRSPYG AKLYAYWIVVN+REAY LF NGILFNHESPRRG FVTRKI+R VAKI LG + LGNLD+ RDWGHAKDYVEAMWLMLQ + +D+V+AT E HSVREFVEKSF H+G I WEG++ENEVG T V V K+YRP EVD+LQGD KA+ KL WK +V F+ELV+EMV +D+ELM+ NP+A
Sbjct: 17 GEMGKPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRTNPNA 372 The following BLAST results are available for this feature:
BLAST of TCONS_00064140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.