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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064144 ID=TCONS_00064144|Name=TCONS_00064144|organism=Clytia hemisphaerica|type=transcript|length=890bp
CATCAGTATGTGTTCTGGAAAATGTGGAAAGCAAGAGCCAAAGGGTAAGA
ATTATACAAAACCGAAATTTATGCTATCTTCTTTAATCTTCAAACGAAGA
GAAAACCGGCAAAAGAAAGGCATAAATCTTTTTCTTGATGCAGTACTCTC
TAACTCAATTCATTCTGTTCAAAATGAAGCCAAACTTTATAAACAGAAAA
GACGTCAGGTTATAACAGAGCGCTCTATTAaagagaaaaactttgaaaac
gaaAAAGCAAATGAAGAAGAAATCGAAAGGATTTGTGGCATTGATAGTTT
CTTTAATGAACTTCAGAGTGTGAGATTGGATAAAAAAAACTACAGTGGTG
AAAATAATCTCTCAACAGAAACTTATATACATGACACTGATTGTGAAATT
AATAACATGGTTTCCAACTTCATCGAAAATGGTTCTCTAGGCTGAAGTAT
AGGTGTAGCTTCATTAATCTTGTGAAGAGGGAGAATTGTTCtctcatttt
catcattaacaTCATAAAACAGTAGTTTCAATCTTGCTGCTTACATCTTT
TCACTAAATTGTTGGTGTACTATCAATTTAACTGATAACAAGGACGTGGA
AAAATTAAATCCTACCAGACATAGGAATATAGGAGAGAATTAAAAATTGG
TGTCCAAGTGATCTCTGGTTTTTgcaatttgtttgttttggacaGTTCAA
AAAGTTATTCCAGACGAATCAAAAGTCTTCTCAATTTTAGAATTGACAAG
TTACAAGTTGAATGAATTCATATTTCTGGTGTTGGATCACCAGATTATTt
gcttaatttttatttttgttactaTATTGCCACATACCATTGATTGGTAC
TGTTACTATGCTTGAGGTAACTTACATTATGTCTTCTACG Run BLAST on NCBI protein sequence of TCONS_00064144-protein >TCONS_00064144-protein ID=TCONS_00064144-protein|Name=TCONS_00064144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
ISMCSGKCGKQEPKGKNYTKPKFMLSSLIFKRRENRQKKGINLFLDAVLS
NSIHSVQNEAKLYKQKRRQVITERSIKEKNFENEKANEEEIERICGIDSF
FNELQSVRLDKKNYSGENNLSTETYIHDTDCEINNMVSNFIENGSLG Run BLAST on NCBI transcript from alignment at scaffold_409:16614..17503 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064144 ID=TCONS_00064144|Name=TCONS_00064144|organism=Clytia hemisphaerica|type=transcript|length=890bp|location=Sequence derived from alignment at scaffold_409:16614..17503 (Clytia hemisphaerica)
CGTAGAAGACATAATGTAAGTTACCTCAAGCATAGTAACAGTACCAATCA
ATGGTATGTGGCAATAtagtaacaaaaataaaaattaagcaAATAATCTG
GTGATCCAACACCAGAAATATGAATTCATTCAACTTGTAACTTGTCAATT
CTAAAATTGAGAAGACTTTTGATTCGTCTGGAATAACTTTTTGAACtgtc
caaaacaaacaaattgcAAAAACCAGAGATCACTTGGACACCAATTTTTA
ATTCTCTCCTATATTCCTATGTCTGGTAGGATTTAATTTTTCCACGTCCT
TGTTATCAGTTAAATTGATAGTACACCAACAATTTAGTGAAAAGATGTAA
GCAGCAAGATTGAAACTACTGTTTTATGAtgttaatgatgaaaatgagaG
AACAATTCTCCCTCTTCACAAGATTAATGAAGCTACACCTATACTTCAGC
CTAGAGAACCATTTTCGATGAAGTTGGAAACCATGTTATTAATTTCACAA
TCAGTGTCATGTATATAAGTTTCTGTTGAGAGATTATTTTCACCACTGTA
GTTTTTTTTATCCAATCTCACACTCTGAAGTTCATTAAAGAAACTATCAA
TGCCACAAATCCTTTCGATTTCTTCTTCATTTGCTTTttcgttttcaaag
tttttctcttTAATAGAGCGCTCTGTTATAACCTGACGTCTTTTCTGTTT
ATAAAGTTTGGCTTCATTTTGAACAGAATGAATTGAGTTAGAGAGTACTG
CATCAAGAAAAAGATTTATGCCTTTCTTTTGCCGGTTTTCTCTTCGTTTG
AAGATTAAAGAAGATAGCATAAATTTCGGTTTTGTATAATTCTTACCCTT
TGGCTCTTGCTTTCCACATTTTCCAGAACACATACTGATG Coding sequence (CDS) from alignment at scaffold_409:16614..17503 >TCONS_00064144 ID=TCONS_00064144|Name=TCONS_00064144|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_409:16614..17503 (Clytia hemisphaerica)
TCAGCCTAGAGAACCATTTTCGATGAAGTTGGAAACCATGTTATTAATTT
CACAATCAGTGTCATGTATATAAGTTTCTGTTGAGAGATTATTTTCACCA
CTGTAGTTTTTTTTATCCAATCTCACACTCTGAAGTTCATTAAAGAAACT
ATCAATGCCACAAATCCTTTCGATTTCTTCTTCATTTGCTTTttcgtttt
caaagtttttctcttTAATAGAGCGCTCTGTTATAACCTGACGTCTTTTC
TGTTTATAAAGTTTGGCTTCATTTTGAACAGAATGAATTGAGTTAGAGAG
TACTGCATCAAGAAAAAGATTTATGCCTTTCTTTTGCCGGTTTTCTCTTC
GTTTGAAGATTAAAGAAGATAGCATAAATTTCGGTTTTGTATAATTCTTA
CCCTTTGGCTCTTGCTTTCCACATTTTCCAGAACACATACTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064144-exon-scaffold_409-1491911889:16614..17503 | TCONS_00064144-exon-scaffold_409-1491911889:16614..17503 | Clytia hemisphaerica | exon |
| TCONS_00064144-exon-scaffold_409-1510915933:16614..17503 | TCONS_00064144-exon-scaffold_409-1510915933:16614..17503 | Clytia hemisphaerica | exon |
| TCONS_00064144-exon-scaffold_409-1575043694:16614..17503 | TCONS_00064144-exon-scaffold_409-1575043694:16614..17503 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_409 | supercontig | scaffold_409:16614..17503 . |
Blast
The following BLAST results are available for this feature:
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