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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064154 ID=TCONS_00064154|Name=TCONS_00064154|organism=Clytia hemisphaerica|type=transcript|length=1995bp
ctcctgtgaaaatggtaattataccacatttctacaagaagttgattttt
tcttcttcatttttcattttcattttccttttttttctcaaattttttac
ttgataatattccactcacgaatatctttttaacgagcacaaaatcgcat
cttgattcgaattcaatcaaaagttacagctatttttgtctccagctgca
aattatttcgagacagactttaatcacccatcagaatttgaaagccctcc
cttttagacgtaaagatttctagtgaagaaattttcaaggaaattGTGCT
GAAACTCTCTAAATTAGCACAGTGTTCGCCCAAAAATACATCCATATGGA
ATCATAGCAGATCATAGAACTATTGTAACCttactttgagaaaaatattt
ttgtatcacGTTTGAACAAGAAATTTTTGCATAGtatgtttatttcaatc
aggataacattctcacttctgttcttataaatttacatttcggatttttt
tgcttccaatgatggtacatcaaagaaaagccacTTTGaattagatttat
aaaagatttcaacgaccatttaggtcattaccgagacgttctctccatct
atatctttattaccttcatgccATAAGTGACGCAAAaccttcaaaatttt
aaaccaaCAGAAGGGTGATATCAGAGCGCAGTTTAGCCTGTGAAATCTTG
AATCTTCAATTctattatcaaattttcaatcatttttttcaattcatcaa
tCGCAAACTCAAATTTCTgtaattataaaataaaaatcagtAGCAATTCT
AAATAATttctaataaatttttttaagtctAAATGAAGAGGAAGATTCAA
ACAAGAATCTCGTCACCGGAAAAGTACACAGTATCAAcaacatttctttt
tctttgtttcctTTTGTTGATCCAAACTTTGAGTATTACCAGATAATTGA
ATATTATTGCCCCCATTATTTTCGAGCTCACCATCTGTGACATCCTCAAG
TAATTGTCTGGTTAAAGATAGAAAAGCTGCTTCAACATTAGAACCATTCT
TAGAGCTTGTCTCAACAACCGTTAAATTCATGCGGTCAGCAAAGACTTGT
ACATCCTCCCTACTCACTTTACGGTGTGATTCTAGATCAGTTTTAGTTCC
TATAATCATTTTCTTAGCACGCTCGTCAGCTTGCTCCCCTGCATCAGTTA
ACCAGTTACCAAGTCTTATGAACGAATCAGGATCAGTGATATCATAAACT
AAACATATACCACGAGCTCCTCGATAATAAGTATTCACAATAGTACGGAA
TCTTTCCTGTCCAGCAGAATCCCAGATATTCAATTTGATNCACCGGAAAA
GTACACAGTATCAAcaacatttctttttctttgtttcctTTTGTTGATCC
AAACTTTGAGTATTACCAGATAATTGAATATTATTGCCCCCATTATTTTC
GAGCTCACCATCTGTGACATCCTCAAGTAATTGTCTGGTTAAAGATAGAA
AAGCTGCTTCAACATTAGAACCATTCTTAGAGCTTGTCTCAACAACCGTT
AAATTCATGCGGTCAGCAAAGACTTGTACATCCTCCCTACTCACTTTACG
GTGTGATTCTAGATCAGTTTTAGTTCCTATAATCATTTTCTTAGCACGCT
CGTCAGCTTGCTCCCCTGCATCAGTTAACCAGTTACCAAGTCTTATGAAC
GAATCAGGATCAGTGATATCATAAACTAAACATATACCACGAGCTCCTCG
ATAATAAGTATTCACAATAGTACGGAATCTTTCCTGTCCAGCGGAATCCC
AGATATTCAATTTGATAGTTTTTCCCATCATCTCAACTGTGCGTACCTTA
AAGTCCACTCCAATGGTGTTTACATAATTTTCTGTGAAATTCTGATCAAC
AAACCGCCTGAGTAAACAGGATTTTCCAACTCCTGCTTCTCCAACGATAA
TAATTTTGAATACAAAGTCTGCTGCCATTTTCTAATTCTCTAAAA Run BLAST on NCBI transcript from alignment at scaffold_41:40318..42312+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064154 ID=TCONS_00064154|Name=TCONS_00064154|organism=Clytia hemisphaerica|type=transcript|length=1995bp|location=Sequence derived from alignment at scaffold_41:40318..42312+ (Clytia hemisphaerica)
ctcctgtgaaaatggtaattataccacatttctacaagaagttgattttt
tcttcttcatttttcattttcattttccttttttttctcaaattttttac
ttgataatattccactcacgaatatctttttaacgagcacaaaatcgcat
cttgattcgaattcaatcaaaagttacagctatttttgtctccagctgca
aattatttcgagacagactttaatcacccatcagaatttgaaagccctcc
cttttagacgtaaagatttctagtgaagaaattttcaaggaaattGTGCT
GAAACTCTCTAAATTAGCACAGTGTTCGCCCAAAAATACATCCATATGGA
ATCATAGCAGATCATAGAACTATTGTAACCttactttgagaaaaatattt
ttgtatcacGTTTGAACAAGAAATTTTTGCATAGtatgtttatttcaatc
aggataacattctcacttctgttcttataaatttacatttcggatttttt
tgcttccaatgatggtacatcaaagaaaagccacTTTGaattagatttat
aaaagatttcaacgaccatttaggtcattaccgagacgttctctccatct
atatctttattaccttcatgccATAAGTGACGCAAAaccttcaaaatttt
aaaccaaCAGAAGGGTGATATCAGAGCGCAGTTTAGCCTGTGAAATCTTG
AATCTTCAATTctattatcaaattttcaatcatttttttcaattcatcaa
tCGCAAACTCAAATTTCTgtaattataaaataaaaatcagtAGCAATTCT
AAATAATttctaataaatttttttaagtctAAATGAAGAGGAAGATTCAA
ACAAGAATCTCGTCACCGGAAAAGTACACAGTATCAAcaacatttctttt
tctttgtttcctTTTGTTGATCCAAACTTTGAGTATTACCAGATAATTGA
ATATTATTGCCCCCATTATTTTCGAGCTCACCATCTGTGACATCCTCAAG
TAATTGTCTGGTTAAAGATAGAAAAGCTGCTTCAACATTAGAACCATTCT
TAGAGCTTGTCTCAACAACCGTTAAATTCATGCGGTCAGCAAAGACTTGT
ACATCCTCCCTACTCACTTTACGGTGTGATTCTAGATCAGTTTTAGTTCC
TATAATCATTTTCTTAGCACGCTCGTCAGCTTGCTCCCCTGCATCAGTTA
ACCAGTTACCAAGTCTTATGAACGAATCAGGATCAGTGATATCATAAACT
AAACATATACCACGAGCTCCTCGATAATAAGTATTCACAATAGTACGGAA
TCTTTCCTGTCCAGCAGAATCCCAGATATTCAATTTGATNCACCGGAAAA
GTACACAGTATCAAcaacatttctttttctttgtttcctTTTGTTGATCC
AAACTTTGAGTATTACCAGATAATTGAATATTATTGCCCCCATTATTTTC
GAGCTCACCATCTGTGACATCCTCAAGTAATTGTCTGGTTAAAGATAGAA
AAGCTGCTTCAACATTAGAACCATTCTTAGAGCTTGTCTCAACAACCGTT
AAATTCATGCGGTCAGCAAAGACTTGTACATCCTCCCTACTCACTTTACG
GTGTGATTCTAGATCAGTTTTAGTTCCTATAATCATTTTCTTAGCACGCT
CGTCAGCTTGCTCCCCTGCATCAGTTAACCAGTTACCAAGTCTTATGAAC
GAATCAGGATCAGTGATATCATAAACTAAACATATACCACGAGCTCCTCG
ATAATAAGTATTCACAATAGTACGGAATCTTTCCTGTCCAGCGGAATCCC
AGATATTCAATTTGATAGTTTTTCCCATCATCTCAACTGTGCGTACCTTA
AAGTCCACTCCAATGGTGTTTACATAATTTTCTGTGAAATTCTGATCAAC
AAACCGCCTGAGTAAACAGGATTTTCCAACTCCTGCTTCTCCAACGATAA
TAATTTTGAATACAAAGTCTGCTGCCATTTTCTAATTCTCTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064154-exon-scaffold_41-1491911889:40318..42312 | TCONS_00064154-exon-scaffold_41-1491911889:40318..42312 | Clytia hemisphaerica | exon |
| TCONS_00064154-exon-scaffold_41-1510915933:40318..42312 | TCONS_00064154-exon-scaffold_41-1510915933:40318..42312 | Clytia hemisphaerica | exon |
| TCONS_00064154-exon-scaffold_41-1575043694:40318..42312 | TCONS_00064154-exon-scaffold_41-1575043694:40318..42312 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:40318..42312 + |
Blast
BLAST of TCONS_00064154 vs. Swiss-Prot (Human)
Match: RAB1B (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.255e-56 Identity = 84/183 (45.90%), Postives = 130/183 (71.04%), Query Frame = -3
Query: 1421 DFVFKIIIVGEAGVGKSCLLRRFVDQNFTENYVNTIGVDFKVRTVEMMGKTIKLNIWDSAGQERFRTIVNTYYRGARGICLVYDITDPDSFIRLGNWLTDAGEQADERAKKMIIGTKTDLESHRKVSREDVQVFADRMNLTVVETSSKNGSNVEAAFLSLTRQLLEDVTDGELENNGGNNIQL 1969
D++FK++++G++GVGKSCLL RF D +TE+Y++TIGVDFK+RT+E+ GKTIKL IWD+AGQERFRTI ++YYRGA GI +VYD+TD +S+ + WL + A E K+++G K+DL + + V + FAD + + +ETS+KN +NVE AF+++ ++ + + G N+++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKI 188 HSP 2 Score: 118.242 bits (295), Expect = 8.673e-30 Identity = 53/134 (39.55%), Postives = 85/134 (63.43%), Query Frame = -3
Query: 944 RXIKLNIWDSAGQERFRTIVNTYYRGARGICLVYDITDPDSFIRLGNWLTDAGEQADERAKKMIIGTKTDLESHRKVSREDVQVFADRMNLTVVETSSKNGSNVEAAFLSLTRQLLEDVTDGELENNGGNNIQL 1345
+ IKL IWD+AGQERFRTI ++YYRGA GI +VYD+TD +S+ + WL + A E K+++G K+DL + + V + FAD + + +ETS+KN +NVE AF+++ ++ + + G N+++
Sbjct: 55 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKI 188
The following BLAST results are available for this feature:
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