Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064164 ID=TCONS_00064164|Name=TCONS_00064164|organism=Clytia hemisphaerica|type=transcript|length=1717bp AGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAAACACGAGCATGC CAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAGAAGTATTGGAGC TGAagaatgaatttaaattaaagGAAATAGAGAAAGAGAATCAACAAAAG GACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTTAAGAAATGATAT CGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCGAGGCTGATGAAA GAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCATTGGAAtgtgaa aaagagaaaaatgagatACGAAAAGAACTCGAACAACAAGTTCAGAAAAT GAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGGAATCAAGAAAAG AACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCACCAGCATTGAGT AATGAAAGAGTTTCGGATCAACCAGACATACCAGTATTGGAAAGCAACAA AACTTCAAAACAACAAGACAAATCAGCCCAAGGAATTGAAAGAGTTTCGA GTCAAAGAGATTCAAAAGCATTGGGAAGCAGCAGAATGTCAATCCAACGA GAACCAGCTATCGTAACCAACAAAGAAAATGCTGAACGATTTTTTGAAGG AGCTAATCGTTTTTTCGGAACAGGACGAAGGAATTCTTATTCTGGAACAT ATCAAGAATGGTATCAAGATTTATCAACTTCAACGGAAAACCATAGACAA TATTTCAacgaaaagtttgttttgattcggaAAGAGGTCAAGAAATATAC TGAATTTTTGTCATTGTTGTTGAAACGTGGGAAAGTAGAGGAACAGATGT GCGATTTAGTGGTGGCAGGACTGAACGAAAAAGTGTTGAGTGAATCTGAA GTCATGATCTTACATCCACAAGAATtaggaaaatatttgaaaataactGA CTATCATAGACGAGATCATTATACATATTGGGCTTACAATGGCGTAACCA AAGACTTTTATTTTGGTTCATCATACTCCGTTATTATTCTTGTGGCATTG AAGCAAAAATAAATGTGACAAGAAAGGGCTTGAGTATCTAtttcttcatt tgatttttatttgttaaagaCAATCTCAAGACACCATGCATACATATGAA AATGATGTAGAAAGTGCATTATtgtttattcaaaatatttgtttattaTG GACAGGTTAGCGATAAAAAGGGCCAATTTCGATATAATCAGTTGCCGTTT TATCAGTGTATACAAATAGATTATTCTTTGTAAATTTCTAACCAGTACCA TATATGAGCCTGCTATTAGAACCCAACTAttagatacacgcttttttata agaatatactttattagaatgtccatgatgaaaatagccaaaatattaag aatctCGTAAGAATATTACCATCATGGAATAGGCAactgaagctaagaat gtcatatCTATAGCCTTTTACTTGTATATTGCCATTTAATCCCAAGCAAT GCTAAGAAGTTTCACAAAAATCCGAAATTCTTGCTTGAGGTATATGTTGC ATGCTAGATTCAGGCTTGGTTTTCACCTTAatctaagaatactgtaagaa tatttcaggataatTTCGACCAAagagttaagaatatccatgatgaaatg gatttacaccattcttataaaaaaagcgtgtattttgaataaaatccACT ATTTATTATTGTAAATT Run BLAST on NCBI protein sequence of TCONS_00064164-protein >TCONS_00064164-protein ID=TCONS_00064164-protein|Name=TCONS_00064164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
RTTMEDEMVTKLKHEHAKEIENLIRSHKIEVLELKNEFKLKEIEKENQQK DKTIELEKEVQRLRNDIALMKLKAKYKQIEADERIQEVKNQMGMMSLECE KEKNEIRKELEQQVQKMKLQIELLEMDKVESRKEPAKKGVSTQRDAPALS NERVSDQPDIPVLESNKTSKQQDKSAQGIERVSSQRDSKALGSSRMSIQR EPAIVTNKENAERFFEGANRFFGTGRRNSYSGTYQEWYQDLSTSTENHRQ YFNEKFVLIRKEVKKYTEFLSLLLKRGKVEEQMCDLVVAGLNEKVLSESE VMILHPQELGKYLKITDYHRRDHYTYWAYNGVTKDFYFGSSYSVIILVAL KQK Run BLAST on NCBI transcript from alignment at scaffold_41:233328..235128+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064164 ID=TCONS_00064164|Name=TCONS_00064164|organism=Clytia hemisphaerica|type=transcript|length=1801bp|location=Sequence derived from alignment at scaffold_41:233328..235128+ (Clytia hemisphaerica) AGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAAACACGAGCATGC
CAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAGAAGTATTGGAGC
TGAagaatgaatttaaattaaagGAAATAGAGAAAGAGAATCAACAAAAG
GACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTTAAGAAATGATAT
CGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCGAGGCTGATGAAA
GAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCATTGGAAtgtgaa
aaagagaaaaatgagatACGAAAAGAACTCGAACAACAAGTTCAGAAAAT
GAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGGAATCAAGAAAAG
AACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCACCAGCATTGAGT
AATGAAAGAGTTTCGGATCAACCAGACATACCAGTATTGAGTAATAAAAG
AGTTTCGGATCAACCAGACATACCAGTATTGAATAATAAAAGAGTTTCGG
ATCAACCAGACATACCAGTATTGGAAAGCAACAAAACTTCAAAACAACAA
GACAAATCAGCCCAAGGAATTGAAAGAGTTTCGAGTCAAAGAGATTCAAA
AGCATTGGGAAGCAGCAGAATGTCAATCCAACGAGAACCAGCTATCGTAA
CCAACAAAGAAAATGCTGAACGATTTTTTGAAGGAGCTAATCGTTTTTTC
GGAACAGGACGAAGGAATTCTTATTCTGGAACATATCAAGAATGGTATCA
AGATTTATCAACTTCAACGGAAAACCATAGACAATATTTCAacgaaaagt
ttgttttgattcggaAAGAGGTCAAGAAATATACTGAATTTTTGTCATTG
TTGTTGAAACGTGGGAAAGTAGAGGAACAGATGTGCGATTTAGTGGTGGC
AGGACTGAACGAAAAAGTGTTGAGTGAATCTGAAGTCATGATCTTACATC
CACAAGAATtaggaaaatatttgaaaataactGACTATCATAGACGAGAT
CATTATACATATTGGGCTTACAATGGCGTAACCAAAGACTTTTATTTTGG
TTCATCATACTCCGTTATTATTCTTGTGGCATTGAAGCAAAAATAAATGT
GACAAGAAAGGGCTTGAGTATCTAtttcttcatttgatttttatttgtta
aagaCAATCTCAAGACACCATGCATACATATGAAAATGATGTAGAAAGTG
CATTATtgtttattcaaaatatttgtttattaTGGACAGGTTAGCGATAA
AAAGGGCCAATTTCGATATAATCAGTTGCCGTTTTATCAGTGTATACAAA
TAGATTATTCTTTGTAAATTTCTAACCAGTACCATATATGAGCCTGCTAT
TAGAACCCAACTAttagatacacgcttttttataagaatatactttatta
gaatgtccatgatgaaaatagccaaaatattaagaatctCGTAAGAATAT
TACCATCATGGAATAGGCAactgaagctaagaatgtcatatCTATAGCCT
TTTACTTGTATATTGCCATTTAATCCCAAGCAATGCTAAGAAGTTTCACA
AAAATCCGAAATTCTTGCTTGAGGTATATGTTGCATGCTAGATTCAGGCT
TGGTTTTCACCTTAatctaagaatactgtaagaatatttcaggataatTT
CGACCAAagagttaagaatatccatgatgaaatggatttacaccattctt
ataaaaaaagcgtgtattttgaataaaatccACTATTTATTATTGTAAAT
T Coding sequence (CDS) from alignment at scaffold_41:233328..235128+ >TCONS_00064164 ID=TCONS_00064164|Name=TCONS_00064164|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_41:233328..235128+ (Clytia hemisphaerica) AGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAAACACGAGCATGC CAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAGAAGTATTGGAGC TGAagaatgaatttaaattaaagGAAATAGAGAAAGAGAATCAACAAAAG GACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTTAAGAAATGATAT CGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCGAGGCTGATGAAA GAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCATTGGAAtgtgaa aaagagaaaaatgagatACGAAAAGAACTCGAACAACAAGTTCAGAAAAT GAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGGAATCAAGAAAAG AACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCACCAGCATTGAGT AATGAAAGAGTTTCGGATCAACCAGACATACCAGTATTGGAAAGCAACAA AACTTCAAAACAACAAGACAAATCAGCCCAAGGAATTGAAAGAGTTTCGA GTCAAAGAGATTCAAAAGCATTGGGAAGCAGCAGAATGTCAATCCAACGA GAACCAGCTATCGTAACCAACAAAGAAAATGCTGAACGATTTTTTGAAGG AGCTAATCGTTTTTTCGGAACAGGACGAAGGAATTCTTATTCTGGAACAT ATCAAGAATGGTATCAAGATTTATCAACTTCAACGGAAAACCATAGACAA TATTTCAacgaaaagtttgttttgattcggaAAGAGGTCAAGAAATATAC TGAATTTTTGTCATTGTTGTTGAAACGTGGGAAAGTAGAGGAACAGATGT GCGATTTAGTGGTGGCAGGACTGAACGAAAAAGTGTTGAGTGAATCTGAA GTCATGATCTTACATCCACAAGAATtaggaaaatatttgaaaataactGA CTATCATAGACGAGATCATTATACATATTGGGCTTACAATGGCGTAACCA AAGACTTTTATTTTGGTTCATCATACTCCGTTATTATTCTTGTGGCATTG AAGCAAAAATAAAGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAA ACACGAGCATGCCAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAG AAGTATTGGAGCTGAagaatgaatttaaattaaagGAAATAGAGAAAGAG AATCAACAAAAGGACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTT AAGAAATGATATCGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCG AGGCTGATGAAAGAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCA TTGGAAtgtgaaaaagagaaaaatgagatACGAAAAGAACTCGAACAACA AGTTCAGAAAATGAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGG AATCAAGAAAAGAACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCA CCAGCATTGAGTAATGAAAGAGTTTCGGATCAACCAGACATACCAGTATT GGAAAGCAACAAAACTTCAAAACAACAAGACAAATCAGCCCAAGGAATTG AAAGAGTTTCGAGTCAAAGAGATTCAAAAGCATTGGGAAGCAGCAGAATG TCAATCCAACGAGAACCAGCTATCGTAACCAACAAAGAAAATGCTGAACG ATTTTTTGAAGGAGCTAATCGTTTTTTCGGAACAGGACGAAGGAATTCTT ATTCTGGAACATATCAAGAATGGTATCAAGATTTATCAACTTCAACGGAA AACCATAGACAATATTTCAacgaaaagtttgttttgattcggaAAGAGGT CAAGAAATATACTGAATTTTTGTCATTGTTGTTGAAACGTGGGAAAGTAG AGGAACAGATGTGCGATTTAGTGGTGGCAGGACTGAACGAAAAAGTGTTG AGTGAATCTGAAGTCATGATCTTACATCCACAAGAATtaggaaaatattt gaaaataactGACTATCATAGACGAGATCATTATACATATTGGGCTTACA ATGGCGTAACCAAAGACTTTTATTTTGGTTCATCATACTCCGTTATTATT CTTGTGGCATTGAAGCAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064164-exon-scaffold_41-1491911889:233328..233804 | TCONS_00064164-exon-scaffold_41-1491911889:233328..233804 | Clytia hemisphaerica | exon |
TCONS_00064164-exon-scaffold_41-1510915933:233328..233804 | TCONS_00064164-exon-scaffold_41-1510915933:233328..233804 | Clytia hemisphaerica | exon |
TCONS_00064164-exon-scaffold_41-1575043694:233328..233804 | TCONS_00064164-exon-scaffold_41-1575043694:233328..233804 | Clytia hemisphaerica | exon |
TCONS_00064164-exon-scaffold_41-1491911889:233889..235128 | TCONS_00064164-exon-scaffold_41-1491911889:233889..235128 | Clytia hemisphaerica | exon |
TCONS_00064164-exon-scaffold_41-1510915933:233889..235128 | TCONS_00064164-exon-scaffold_41-1510915933:233889..235128 | Clytia hemisphaerica | exon |
TCONS_00064164-exon-scaffold_41-1575043694:233889..235128 | TCONS_00064164-exon-scaffold_41-1575043694:233889..235128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_41 | supercontig | scaffold_41:233328..235128 + |
Blast
The following BLAST results are available for this feature:
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