TCONS_00064164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064164
Unique NameTCONS_00064164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064164 ID=TCONS_00064164|Name=TCONS_00064164|organism=Clytia hemisphaerica|type=transcript|length=1717bp
AGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAAACACGAGCATGC
CAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAGAAGTATTGGAGC
TGAagaatgaatttaaattaaagGAAATAGAGAAAGAGAATCAACAAAAG
GACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTTAAGAAATGATAT
CGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCGAGGCTGATGAAA
GAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCATTGGAAtgtgaa
aaagagaaaaatgagatACGAAAAGAACTCGAACAACAAGTTCAGAAAAT
GAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGGAATCAAGAAAAG
AACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCACCAGCATTGAGT
AATGAAAGAGTTTCGGATCAACCAGACATACCAGTATTGGAAAGCAACAA
AACTTCAAAACAACAAGACAAATCAGCCCAAGGAATTGAAAGAGTTTCGA
GTCAAAGAGATTCAAAAGCATTGGGAAGCAGCAGAATGTCAATCCAACGA
GAACCAGCTATCGTAACCAACAAAGAAAATGCTGAACGATTTTTTGAAGG
AGCTAATCGTTTTTTCGGAACAGGACGAAGGAATTCTTATTCTGGAACAT
ATCAAGAATGGTATCAAGATTTATCAACTTCAACGGAAAACCATAGACAA
TATTTCAacgaaaagtttgttttgattcggaAAGAGGTCAAGAAATATAC
TGAATTTTTGTCATTGTTGTTGAAACGTGGGAAAGTAGAGGAACAGATGT
GCGATTTAGTGGTGGCAGGACTGAACGAAAAAGTGTTGAGTGAATCTGAA
GTCATGATCTTACATCCACAAGAATtaggaaaatatttgaaaataactGA
CTATCATAGACGAGATCATTATACATATTGGGCTTACAATGGCGTAACCA
AAGACTTTTATTTTGGTTCATCATACTCCGTTATTATTCTTGTGGCATTG
AAGCAAAAATAAATGTGACAAGAAAGGGCTTGAGTATCTAtttcttcatt
tgatttttatttgttaaagaCAATCTCAAGACACCATGCATACATATGAA
AATGATGTAGAAAGTGCATTATtgtttattcaaaatatttgtttattaTG
GACAGGTTAGCGATAAAAAGGGCCAATTTCGATATAATCAGTTGCCGTTT
TATCAGTGTATACAAATAGATTATTCTTTGTAAATTTCTAACCAGTACCA
TATATGAGCCTGCTATTAGAACCCAACTAttagatacacgcttttttata
agaatatactttattagaatgtccatgatgaaaatagccaaaatattaag
aatctCGTAAGAATATTACCATCATGGAATAGGCAactgaagctaagaat
gtcatatCTATAGCCTTTTACTTGTATATTGCCATTTAATCCCAAGCAAT
GCTAAGAAGTTTCACAAAAATCCGAAATTCTTGCTTGAGGTATATGTTGC
ATGCTAGATTCAGGCTTGGTTTTCACCTTAatctaagaatactgtaagaa
tatttcaggataatTTCGACCAAagagttaagaatatccatgatgaaatg
gatttacaccattcttataaaaaaagcgtgtattttgaataaaatccACT
ATTTATTATTGTAAATT
Run BLAST on NCBI

protein sequence of TCONS_00064164-protein

>TCONS_00064164-protein ID=TCONS_00064164-protein|Name=TCONS_00064164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
RTTMEDEMVTKLKHEHAKEIENLIRSHKIEVLELKNEFKLKEIEKENQQK
DKTIELEKEVQRLRNDIALMKLKAKYKQIEADERIQEVKNQMGMMSLECE
KEKNEIRKELEQQVQKMKLQIELLEMDKVESRKEPAKKGVSTQRDAPALS
NERVSDQPDIPVLESNKTSKQQDKSAQGIERVSSQRDSKALGSSRMSIQR
EPAIVTNKENAERFFEGANRFFGTGRRNSYSGTYQEWYQDLSTSTENHRQ
YFNEKFVLIRKEVKKYTEFLSLLLKRGKVEEQMCDLVVAGLNEKVLSESE
VMILHPQELGKYLKITDYHRRDHYTYWAYNGVTKDFYFGSSYSVIILVAL
KQK
Run BLAST on NCBI

transcript from alignment at scaffold_41:233328..235128+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064164 ID=TCONS_00064164|Name=TCONS_00064164|organism=Clytia hemisphaerica|type=transcript|length=1801bp|location=Sequence derived from alignment at scaffold_41:233328..235128+ (Clytia hemisphaerica)
AGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAAACACGAGCATGC CAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAGAAGTATTGGAGC TGAagaatgaatttaaattaaagGAAATAGAGAAAGAGAATCAACAAAAG GACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTTAAGAAATGATAT CGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCGAGGCTGATGAAA GAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCATTGGAAtgtgaa aaagagaaaaatgagatACGAAAAGAACTCGAACAACAAGTTCAGAAAAT GAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGGAATCAAGAAAAG AACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCACCAGCATTGAGT AATGAAAGAGTTTCGGATCAACCAGACATACCAGTATTGAGTAATAAAAG AGTTTCGGATCAACCAGACATACCAGTATTGAATAATAAAAGAGTTTCGG ATCAACCAGACATACCAGTATTGGAAAGCAACAAAACTTCAAAACAACAA GACAAATCAGCCCAAGGAATTGAAAGAGTTTCGAGTCAAAGAGATTCAAA AGCATTGGGAAGCAGCAGAATGTCAATCCAACGAGAACCAGCTATCGTAA CCAACAAAGAAAATGCTGAACGATTTTTTGAAGGAGCTAATCGTTTTTTC GGAACAGGACGAAGGAATTCTTATTCTGGAACATATCAAGAATGGTATCA AGATTTATCAACTTCAACGGAAAACCATAGACAATATTTCAacgaaaagt ttgttttgattcggaAAGAGGTCAAGAAATATACTGAATTTTTGTCATTG TTGTTGAAACGTGGGAAAGTAGAGGAACAGATGTGCGATTTAGTGGTGGC AGGACTGAACGAAAAAGTGTTGAGTGAATCTGAAGTCATGATCTTACATC CACAAGAATtaggaaaatatttgaaaataactGACTATCATAGACGAGAT CATTATACATATTGGGCTTACAATGGCGTAACCAAAGACTTTTATTTTGG TTCATCATACTCCGTTATTATTCTTGTGGCATTGAAGCAAAAATAAATGT GACAAGAAAGGGCTTGAGTATCTAtttcttcatttgatttttatttgtta aagaCAATCTCAAGACACCATGCATACATATGAAAATGATGTAGAAAGTG CATTATtgtttattcaaaatatttgtttattaTGGACAGGTTAGCGATAA AAAGGGCCAATTTCGATATAATCAGTTGCCGTTTTATCAGTGTATACAAA TAGATTATTCTTTGTAAATTTCTAACCAGTACCATATATGAGCCTGCTAT TAGAACCCAACTAttagatacacgcttttttataagaatatactttatta gaatgtccatgatgaaaatagccaaaatattaagaatctCGTAAGAATAT TACCATCATGGAATAGGCAactgaagctaagaatgtcatatCTATAGCCT TTTACTTGTATATTGCCATTTAATCCCAAGCAATGCTAAGAAGTTTCACA AAAATCCGAAATTCTTGCTTGAGGTATATGTTGCATGCTAGATTCAGGCT TGGTTTTCACCTTAatctaagaatactgtaagaatatttcaggataatTT CGACCAAagagttaagaatatccatgatgaaatggatttacaccattctt ataaaaaaagcgtgtattttgaataaaatccACTATTTATTATTGTAAAT T

Coding sequence (CDS) from alignment at scaffold_41:233328..235128+

>TCONS_00064164 ID=TCONS_00064164|Name=TCONS_00064164|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_41:233328..235128+ (Clytia hemisphaerica)
AGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAAACACGAGCATGC
CAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAGAAGTATTGGAGC
TGAagaatgaatttaaattaaagGAAATAGAGAAAGAGAATCAACAAAAG
GACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTTAAGAAATGATAT
CGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCGAGGCTGATGAAA
GAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCATTGGAAtgtgaa
aaagagaaaaatgagatACGAAAAGAACTCGAACAACAAGTTCAGAAAAT
GAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGGAATCAAGAAAAG
AACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCACCAGCATTGAGT
AATGAAAGAGTTTCGGATCAACCAGACATACCAGTATTGGAAAGCAACAA
AACTTCAAAACAACAAGACAAATCAGCCCAAGGAATTGAAAGAGTTTCGA
GTCAAAGAGATTCAAAAGCATTGGGAAGCAGCAGAATGTCAATCCAACGA
GAACCAGCTATCGTAACCAACAAAGAAAATGCTGAACGATTTTTTGAAGG
AGCTAATCGTTTTTTCGGAACAGGACGAAGGAATTCTTATTCTGGAACAT
ATCAAGAATGGTATCAAGATTTATCAACTTCAACGGAAAACCATAGACAA
TATTTCAacgaaaagtttgttttgattcggaAAGAGGTCAAGAAATATAC
TGAATTTTTGTCATTGTTGTTGAAACGTGGGAAAGTAGAGGAACAGATGT
GCGATTTAGTGGTGGCAGGACTGAACGAAAAAGTGTTGAGTGAATCTGAA
GTCATGATCTTACATCCACAAGAATtaggaaaatatttgaaaataactGA
CTATCATAGACGAGATCATTATACATATTGGGCTTACAATGGCGTAACCA
AAGACTTTTATTTTGGTTCATCATACTCCGTTATTATTCTTGTGGCATTG
AAGCAAAAATAAAGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAA
ACACGAGCATGCCAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAG
AAGTATTGGAGCTGAagaatgaatttaaattaaagGAAATAGAGAAAGAG
AATCAACAAAAGGACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTT
AAGAAATGATATCGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCG
AGGCTGATGAAAGAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCA
TTGGAAtgtgaaaaagagaaaaatgagatACGAAAAGAACTCGAACAACA
AGTTCAGAAAATGAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGG
AATCAAGAAAAGAACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCA
CCAGCATTGAGTAATGAAAGAGTTTCGGATCAACCAGACATACCAGTATT
GGAAAGCAACAAAACTTCAAAACAACAAGACAAATCAGCCCAAGGAATTG
AAAGAGTTTCGAGTCAAAGAGATTCAAAAGCATTGGGAAGCAGCAGAATG
TCAATCCAACGAGAACCAGCTATCGTAACCAACAAAGAAAATGCTGAACG
ATTTTTTGAAGGAGCTAATCGTTTTTTCGGAACAGGACGAAGGAATTCTT
ATTCTGGAACATATCAAGAATGGTATCAAGATTTATCAACTTCAACGGAA
AACCATAGACAATATTTCAacgaaaagtttgttttgattcggaAAGAGGT
CAAGAAATATACTGAATTTTTGTCATTGTTGTTGAAACGTGGGAAAGTAG
AGGAACAGATGTGCGATTTAGTGGTGGCAGGACTGAACGAAAAAGTGTTG
AGTGAATCTGAAGTCATGATCTTACATCCACAAGAATtaggaaaatattt
gaaaataactGACTATCATAGACGAGATCATTATACATATTGGGCTTACA
ATGGCGTAACCAAAGACTTTTATTTTGGTTCATCATACTCCGTTATTATT
CTTGTGGCATTGAAGCAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040231XLOC_040231Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064164-proteinTCONS_00064164-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064164-exon-scaffold_41-1491911889:233328..233804TCONS_00064164-exon-scaffold_41-1491911889:233328..233804Clytia hemisphaericaexon
TCONS_00064164-exon-scaffold_41-1510915933:233328..233804TCONS_00064164-exon-scaffold_41-1510915933:233328..233804Clytia hemisphaericaexon
TCONS_00064164-exon-scaffold_41-1575043694:233328..233804TCONS_00064164-exon-scaffold_41-1575043694:233328..233804Clytia hemisphaericaexon
TCONS_00064164-exon-scaffold_41-1491911889:233889..235128TCONS_00064164-exon-scaffold_41-1491911889:233889..235128Clytia hemisphaericaexon
TCONS_00064164-exon-scaffold_41-1510915933:233889..235128TCONS_00064164-exon-scaffold_41-1510915933:233889..235128Clytia hemisphaericaexon
TCONS_00064164-exon-scaffold_41-1575043694:233889..235128TCONS_00064164-exon-scaffold_41-1575043694:233889..235128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:233328..235128 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (6.0397 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167244 0.322364 0.914974 0.97494 0.126948 0.0250791 0.152004 0.0850426 0.0199195 0.17247 0.0239551 0.110232 1.66526 1.53127 0.321362 0.100391 0.0707129 0.108872 6.0397 5.18872 0.139447 0.201141 0 0.196691 0.101061 0.270519 0.0649994 0.0694486 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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