TCONS_00064206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064206
Unique NameTCONS_00064206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1985

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064206 ID=TCONS_00064206|Name=TCONS_00064206|organism=Clytia hemisphaerica|type=transcript|length=1985bp
AACGAACTCAGTATAGTGGTTAATATATATCATACATTCAATGATACGGA
GATTGCGGATTGGAAAGGACGCGTCATATGTCGTCTGCCAGTGTGACCtc
ttaaactttgaaaaatgggtcAGCCCCTTTTTATGATGTAAACAATAGAT
AGACAATTGATAAAGAAGGGATCAAAAGGAATTAAGGTCATTATCTGCGT
GGTTGTAATAGAAAACAATACCGGTCGAGAGGTGTAGTAGTATAAAAGGA
CTAGGACCTCGACAGCTTTGGAAGTCAGACTGCAGATGATCAATTTTGAC
CTTACGGAGCACCCAGAGGATTCAATTTTTTAGGAATGATGTGTCATTGT
ATCGATAGACAAATGCTGATATCAAGATTTTTTTTAGTGTGGTGGATTAT
TTCTTATATGATCAGCGTCTCAAGTCAAAACGTTGTTCCGCAAGTTATTC
GCCGGCAGAAAGGAACGCTACCTCCTGGTTTGAAAGTTCTCGGAAGACAA
ACTCTACCACGTGTCACTAACGCACCGGTTTTCACCACACCAAAACCAGG
GCCTGGTCGTGAATGCAAGCAAGGAGCTGATCCAATTACTAAAAAATGTC
CGCCGCCACCTGATAACGCATTTCGTTTCTTTGGAAGGAAAGTTTACAAA
CCACGAAAGGTGAATTCAACGACTCTTACCGCCAAGAAATTGTTTGGGCG
TATTGCCGGGCGgttttggaaaatgaacttgagTATGTTAAGGAATCAAC
AACGTAGTCAGAATTTAAAGTAAACAAAGAGATGAATAATTCAGTGATAG
TAACAAGACATAACGAACCAGCCGGTAAATTGATAAGCTGGCGTCCAGAT
GCCCCAAGATGTGTTGGTCGCCCTTATGTTACTCTGAAGTCGATTATTGA
AGAGGAAACTGGTTTTGCCGGTAAAGATTTGTTGACATCCATGTTAGATC
gaaaaaaatggaaagaaaacTTTGGTAATGCTTCACCACACGGATGAATC
AAGGCAAGGCGAGGTAAGTAACAAGAGAAAGCGGCGGATAACATACCCTC
ACTTCTAGTGGAGCTGGGATATGAATGGCTGATATTGTTGTTATATCTGG
CACCTCGAAAAGATCTACAATGAATTAGTACGTGGCAAAATCGCTTGAAA
CGTTTAAAAAACTGTTGGTTGTTAACACTGGTTTCAAAGCTGGCTACTGC
ATGTTAGAATTCATTGCGGTAGGTCTATTTTTTATATCTGTTGgtttttt
tgattgattgaataTAATTAGACTCTATTCGATATTTAAAGAAATCACGA
ACCAATTTAAGTATAATCAATATACATATGGGGCAATGTATAATTCTTGT
ATGGGTCCGCCTGTAGGCGTGTAAATTCCTTGCTATAAATAGTCTTTTTA
CAACAGTTTATAGACTTTGCTCAACATTTTTATCTCGGAATTATCATAGA
ACACAAGGAAATATAACGTTGATCAGAGGCTATTCCCTAAAAATACATGA
GTTCCAAAGCTTTTttacacctccttctcacagacccagtagggtATACT
AGGATATATCCGGGGTGATATTTTGGacgatttttccagtgggaagggtt
cccagtgggtttttgagaagggggtgtgttcTTAGCTCTGATATTAGTGC
ATATTGTTGTGAAAAGAGAGCAGAAAGGGTATAGTTTTTATTCTGCTGAA
CTCCAGtcccaaaatatttgatttttttaaaacccCTTCTGACAATCCAT
CTGATTGGATTCGCTTTCACTTTGCACGCCTTTCATGGTAAATTCTGACC
TTGGTTGTTCAAATTGCCTTAGTCATTAGCCTCAGATTGTATTGCTCTTA
TCAAGGGGAGCTGTTATTCTTTGATCTCGGTTATCATTTAACTTTGTACT
AAATATTATTTATGttgtaaatattgaaaatctaaagaaattttatttgt
gctataattttagattttttttggtaaatttgtAN
Run BLAST on NCBI

transcript from alignment at scaffold_41:357919..362005-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064206 ID=TCONS_00064206|Name=TCONS_00064206|organism=Clytia hemisphaerica|type=transcript|length=4087bp|location=Sequence derived from alignment at scaffold_41:357919..362005- (Clytia hemisphaerica)
AACGAACTCAGTATAGTGGTTAATATATATCATACATTCAATGATACGGA
GATTGCGGATTGGAAAGGACGCGTCATATGTCGTCTGCCAGTGTGACCTC
TTAAACTTTGAAAAATGGGTCAGCCCCTTTTTATGATGTAAACAATAGAT
AGACAATTGATAAAGAAGGGATCAAAAGGAATTAAGGTCATTATCTGCGT
GGTTGTAATAGAAAACAATACCGGTCGAGAGGTGTAGTAGTATAAAAGGA
CTAGGACCTCGACAGCTTTGGAAGTCAGACTGCAGATGATCAATTTTGAC
CTTACGGAGCACCCAGAGGATTCAATTTTTTAGGAATGATGTGTCATTGT
ATCGATAGACAAATGCTGATATCAAGATTTTTTTTAGTGTGGTGGATTAT
TTCTTATATGGTGAGTTATTACTTATTTTTTGCTTTGTCTTTATTTTTGC
AAATATTGATTCTTGTTATTTATATTTTTCAAGGAGCAATGGCCAGGGGT
CATAGGCGTCAACGTCTCAAACCAGGGATTCGTGGTTCGAATCCCCGCTC
CTTCCAATGTTCTGTTCAGTTCATAGATAGCCAAGCCGGCTGGCCGTGGA
CCCCGTATGAAAACAATCGAAAGACGAAAGTCCTAGATTACTGGGCTATC
CACGTAAAATATCGACTCTATCTATCTATCTATACATTTATACCGATTCT
TTTGTTTTGCTAGTGTTTTTGGTGGTCCAGAATAATTGTCTAGATCTGCA
TCTGCTGCTTGAGATAACGCTTTTTTTTGCTTGTCTGATATATGGATAAG
GACCACAGCACTTTTTAAACAAAAATTTTTAACAACTTACGGGGAGTAGG
TGCGCCAGCTGAGCACAAACTTTGAGAAATTCTCATGCTAATTCTGCTAA
TTCTGCTTTATCAACACCTTTTCTTTCTACAAGAATAACTTAAATGTACT
TTGACCCCTTCTGATTTATAATAGAATATCAATTGTTAGAGCTTTTGGCC
ATAAAGTGGTTTTTCACATTCAACTATCTACCTTCAAGATGCTGTAATTT
TTGATACAGTGAGGCTGTGGAAATACTTTTGGAATAAAGTTTCTTCTTCT
TTCTTCTTTATCTCAATTTTTTTTTTAAATAGAACATTATTTTTTTATCG
GCAATATCTTTCCAACTGTATATTTCTTATAGAGATGTATTCGTTAAGAA
ATGACTTAAAAAGCTTGAAATTATCAAATGTCAATCAACTATAGTGCAAT
AAAATCACTGACTGATTTTAACTTAAACCAGGTCTTCTTGTAACACTCCA
TTTGAGAAGAATGTATTCTGATTAATGTCTATATACAATATTATATAGTA
TATTAGCTCCATATTATGTAATGGTTCATTAGGTCAAATATTAATTAGTA
GGATATGAGCACTTCTCATTATTCTTGAATTTAAAAAACCCTGCAAATTT
TTGATACGACAAAACTGATTACTTCTTCTTCTACTTTGATGGAAATTATC
AAGTCAAAAAACCTTTCCTTGATCTTTAGTAAATGCCCACTTATCAACAA
TTTTCAAAAGACTTTCTACTGGAATAATTCGTACACGTGGTAGTGAAAAA
CCTCTGAAATCAAGAAAATCTAGAATTTGTAACACAATTTCCATCGAGTA
AATAATCCAGATTTTGAAGCAATATTGCTATCATCACTTGATTTTATAAA
TGAAAACCATTAAATATGAAATCCTACAGTTGATTGAAAAATTTCAAAGA
ATAAGTCATACATCATGGGTGTGTTCGATATAAAAGATTTGCTAAAGCAC
TCGAATGTGCAACAACACTATGCAACTTGCCTGTCAACAGTATATGTTTT
ACTTCTTTGCGGTTTTATTCCAATTAAAATGCAATTTCTTGAAAATTAAC
CGACTAATCGAAGTGTGAATTGCCCTTTAGATTCCTCATACAATCTATTT
TAGTTTTTTTCATGTTATAAGAATAGAATTATTAAACTTATAAAATATAT
TATGCTCCTTCAGTTATTGTGGTTTACACGATTTATTTAAAATCTACACT
TATATAAACCGGTGTCCAAAGTTTCAGACAACAGGACAGCTATTAATACA
TGCATTGCCCGAATAATTTACACAGAAAATAATTAAGTAGGGTCTTTTCA
GATTTAAAGTATCATAAGCACTTTAATTGTTTCCTTACAGAGTTTAAATT
TCTTATAAAAAATAAAAATTGTAAATTTATTTGCAAGGCTGGTCAAAGTA
AAATTCCAACCAATTTCACTTAAAATCGTTGTTTTTGTCTTCTGTATATA
GGTAAACCTCAAAAATTTTTTGAATTTTCAAACCACAATTTGAAATTTGC
TAAGACAGGTTGATCATCACTACCTAGGCTCATTAGGAAAAACGAAGAGG
ACCAAGCTTGCCGTCAAATAATTTTTGAATGAATAAGATAATTTATCTAA
TGGTTGGATTTTATACCACACTCATCTCAATTTTGCTGACAATGCTTAAT
CTTCTTTTCCAGATCAGCGTCTCAAGTCAAAACGTTGTTCCGCAAGTTAT
TCGCCGGCAGAAAGGAACGCTACCTCCTGGTTTGAAAGTTCTCGGAAGAC
AAACTCTACCACGTGTCACTAACGCACCGGTTTTCACCACACCAAAACCA
GGGCCTGGTCGTGAATGCAAGCAAGGAGCTGATCCAATTACTAAAAAATG
TCCGCCGCCACCTGATAACGCATTTCGTTTCTTTGGAAGGAAAGTTTACA
AACCACGAAAGGTGAATTCAACGACTCTTACCGCCAAGAAATTGTTTGGG
CGTATTGCCGGGCGGTTTTGGAAAATGAACTTGAGTATGTTAAGGAATCA
ACAACGTAGTCAGAATTTAAAGTAAACAAAGAGATGAATAATTCAGTGAT
AGTAACAAGACATAACGAACCAGCCGGTAAATTGATAAGCTGGCGTCCAG
ATGCCCCAAGATGTGTTGGTCGCCCTTATGTTACTCTGAAGTCGATTATT
GAAGAGGAAACTGGTTTTGCCGGTAAAGATTTGTTGACATCCATGTTAGA
TCGAAAAAAATGGAAAGAAAACTTTGGTAATGCTTCACCACACGGATGAA
TCAAGGCAAGGCGAGGTAAGTAACAAGAGAAAGCGGCGGATAACATACCC
TCACTTCTAGTGGAGCTGGGATATGAATGGCTGATATTGTTGTTATATCT
GGCACCTCGAAAAGATCTACAATGAATTAGTACGTGGCAAAATCGCTTGA
AACGTTTAAAAAACTGTTGGTTGTTAACACTGGTTTCAAAGCTGGCTACT
GCATGTTAGAATTCATTGCGGTAGGTCTATTTTTTATATCTGTTGGTTTT
TTTGATTGATTGAATATAATTAGACTCTATTCGATATTTAAAGAAATCAC
GAACCAATTTAAGTATAATCAATATACATATGGGGCAATGTATAATTCTT
GTATGGGTCCGCCTGTAGGCGTGTAAATTCCTTGCTATAAATAGTCTTTT
TACAACAGTTTATAGACTTTGCTCAACATTTTTATCTCGGAATTATCATA
GAACACAAGGAAATATAACGTTGATCAGAGGCTATTCCCTAAAAATACAT
GAGTTCCAAAGCTTTTTTACACCTCCTTCTCACAGACCCAGTAGGGTATA
CTAGGATATATCCGGGGTGATATTTTGGACGATTTTTCCAGTGGGAAGGG
TTCCCAGTGGGTTTTTGAGAAGGGGGTGTGTTCTTAGCTCTGATATTAGT
GCATATTGTTGTGAAAAGAGAGCAGAAAGGGTATAGTTTTTATTCTGCTG
AACTCCAGTCCCAAAATATTTGATTTTTTTAAAACCCCTTCTGACAATCC
ATCTGATTGGATTCGCTTTCACTTTGCACGCCTTTCATGGTAAATTCTGA
CCTTGGTTGTTCAAATTGCCTTAGTCATTAGCCTCAGATTGTATTGCTCT
TATCAAGGGGAGCTGTTATTCTTTGATCTCGGTTATCATTTAACTTTGTA
CTAAATATTATTTATGTTGTAAATATTGAAAATCTAAAGAAATTTTATTT
GTGCTATAATTTTAGATTTTTTTTGGTAAATTTGTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040256XLOC_040256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064206-exon-scaffold_41-1575043694:361596..362005TCONS_00064206-exon-scaffold_41-1575043694:361596..362005Clytia hemisphaericaexon
TCONS_00064206-exon-scaffold_41-1575043694:357919..359493TCONS_00064206-exon-scaffold_41-1575043694:357919..359493Clytia hemisphaericaexon
TCONS_00064206-exon-scaffold_41-1510915933:361596..362005TCONS_00064206-exon-scaffold_41-1510915933:361596..362005Clytia hemisphaericaexon
TCONS_00064206-exon-scaffold_41-1510915933:357919..359493TCONS_00064206-exon-scaffold_41-1510915933:357919..359493Clytia hemisphaericaexon
TCONS_00064206-exon-scaffold_41-1491911889:361596..362005TCONS_00064206-exon-scaffold_41-1491911889:361596..362005Clytia hemisphaericaexon
TCONS_00064206-exon-scaffold_41-1491911889:357919..359493TCONS_00064206-exon-scaffold_41-1491911889:357919..359493Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:357919..362005 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.4827	0.813263	0.0848497	0	0	0.449491	1.45291	0	0.0771083	0.160155	0	0	0	0	0.0344559	0.199989	0.0386283	0	0	0	0	0	0	0	0	0.146431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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