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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064215 ID=TCONS_00064215|Name=TCONS_00064215|organism=Clytia hemisphaerica|type=transcript|length=964bp
TGCAACTTTGATACTTTATGGCTTTGCCTTCCAGCCTTCGTTCATTCACC
ATGACAAATACCATATTAACCATTAAAGTAGTTTTACACGTTGGATGTAC
CGTCAACTGTtttaaagccagattgacattataTGTTTTTATGAGATCTG
AATCGCTGCTTCAAATACGCTgagtttgcacaaagatagcagttgttcaa
ccaatcatcaaacttcattttaatataatatttcaatgacaagagagttt
tgacttcaaaatgttgaaaaagaattggaatgaatttgcctgcgttttta
atggagctgtgcAATGTTTGTGCAATGGGACACCGAAACAGCAACCattt
tcaccgaacctccacagaatccttttttgtactgtccaagaaacatggaa
atctgtttgttgttgaagaggATGTGACGATAGAGAGAAAAAGCTGACCA
GAAAGCAGTATGTCTCATGTTATCTCAAGTAATTTCATAATAGTTGACGG
TACACAAACTTGACATTAACACTCCTTTTGTTGGAGAAATTCCTGAAGGA
TATTTCATGTTATGTTCCTGTTGTTTGGTtgtattttgaatcattttggt
tTTGGAATGCTTCTGTACCCACTGTattctttacaaaacaatatttCATT
ACGATATAGACAACAACTTAGCTCaaaattatatcattgtcaaaatatgg
tcttggaaattataaattcatgttttgatatgtttgttatttttattttt
gttattgttgtttcaaagaaaatgcttttgagaagaaagtCATTCTAAAT
ATTTCCTGGAGATTATTCCAAGACCCTgcctataaaacatgaaaagctTT
ATAATTCAAGCTTTATAAGGTATCTATTAAAGGGGGCATGTTTAGTGCAA
GCTATGgctgagaaaaattgaatactttgcaatatcactgtatttctgac
aaaaataaacacgg Run BLAST on NCBI transcript from alignment at scaffold_41:423731..425791- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064215 ID=TCONS_00064215|Name=TCONS_00064215|organism=Clytia hemisphaerica|type=transcript|length=2061bp|location=Sequence derived from alignment at scaffold_41:423731..425791- (Clytia hemisphaerica)
TGCAACTTTGATAGTAAGTATAATACTATTTTATCAAAAGTAATGTTTCA
GATAGGAAAAGTAATGTTTCAGATAGGATGTACGATTGAAAATTATTTTA
AAGAATTTCTTTTTGCTTTGTATCCTTGTTGTATAATCAGGCATCAGTTA
CTTTACTGTTACTTTTGGGTACTTTTTATCAGAAATTGGAAAAAAATTGC
ATACCACCATTAACGAACTTTCTGTTTATCTCCAGGCGATGTCAATTGAA
TTCAATTGATCCAAATTTTCGTAATTAAATTGAACTATCAACTTTTATCA
AACAGAATCAAACTATAGGTGTTTGGTGGTTACTGAACCTGATCGAAGAC
GACCCTGTCTAACGAAAGAAATATTTCTATCCCCAGACAAACAAATTGCG
CTGGGACCAAATAAGTGAACCACGCGGCTGGATAAGTGAACGTGTTGTCA
CAAGTTAACGCACGATCGACTAAGTTCGCATGAAAGCGGGCAGAATAGGG
ATGGCCATCCATATGGTGAAATTGACGCCCATGTGTGATCGCCCAGTTTA
AGTACTTCTCGCAGACACGGAACAAGAAAATCCCTGGAGTCCGGGGAATC
GGCAGGGTCGTTCGAACATTCAACTTTACTAGAATCTTTTAGTTTCGTGA
CTGTTCGATTTGGTTGCGGTAATCTAACACCTATCGTTTGATAATGTTAG
ATTAGATTGGTACCCGTGAAAAAGGGTAATTTGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA
GGGTAATTTGCATCATTTGAGGGAAACTTTACATTGCCTCCAAACTGCAG
ACCTTTCTTGGTCTGCACTTTGTCTAAGCTAAAATGTAAATTAAATGTTT
TACAATTTTAGTACCAGAAAGCTCTACTATTTGGAGGCGATACCAGTTTC
CCTCCAGTGATTACCCTTTTTCACGGTAATCAAACAGTCTGATTGACACC
ACCTGGATATTTATTACAAATTATCTATTGACAGTTTCTTCTTCTCTATT
CCTATTTCAGCTTTATGGCTTTGCCTTCCAGCCTTCGTTCATTCACCATG
ACAAATACCATATTAACCATTAAAGTAGTTTTACACGTTGGATGTACCGT
CAACTGTTTTAAAGCCAGATTGACATTATATGTTTTTATGAGATCTGAAT
CGCTGCTTCAAATACGCTGAGTTTGCACAAAGATAGCAGTTGTTCAACCA
ATCATCAAACTTCATTTTAATATAATATTTCAATGACAAGAGAGTTTTGA
CTTCAAAATGTTGAAAAAGAATTGGAATGAATTTGCCTGCGTTTTTAATG
GAGCTGTGCAATGTTTGTGCAATGGGACACCGAAACAGCAACCATTTTCA
CCGAACCTCCACAGAATCCTTTTTTGTACTGTCCAAGAAACATGGAAATC
TGTTTGTTGTTGAAGAGGATGTGACGATAGAGAGAAAAAGCTGACCAGAA
AGCAGTATGTCTCATGTTATCTCAAGTAATTTCATAATAGTTGACGGTAC
ACAAACTTGACATTAACACTCCTTTTGTTGGAGAAATTCCTGAAGGATAT
TTCATGTTATGTTCCTGTTGTTTGGTTGTATTTTGAATCATTTTGGTTTT
GGAATGCTTCTGTACCCACTGTATTCTTTACAAAACAATATTTCATTACG
ATATAGACAACAACTTAGCTCAAAATTATATCATTGTCAAAATATGGTCT
TGGAAATTATAAATTCATGTTTTGATATGTTTGTTATTTTTATTTTTGTT
ATTGTTGTTTCAAAGAAAATGCTTTTGAGAAGAAAGTCATTCTAAATATT
TCCTGGAGATTATTCCAAGACCCTGCCTATAAAACATGAAAAGCTTTATA
ATTCAAGCTTTATAAGGTATCTATTAAAGGGGGCATGTTTAGTGCAAGCT
ATGGCTGAGAAAAATTGAATACTTTGCAATATCACTGTATTTCTGACAAA
AATAAACACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064215-exon-scaffold_41-1575043694:425779..425791 | TCONS_00064215-exon-scaffold_41-1575043694:425779..425791 | Clytia hemisphaerica | exon |
| TCONS_00064215-exon-scaffold_41-1575043694:423731..424681 | TCONS_00064215-exon-scaffold_41-1575043694:423731..424681 | Clytia hemisphaerica | exon |
| TCONS_00064215-exon-scaffold_41-1510915933:425779..425791 | TCONS_00064215-exon-scaffold_41-1510915933:425779..425791 | Clytia hemisphaerica | exon |
| TCONS_00064215-exon-scaffold_41-1510915933:423731..424681 | TCONS_00064215-exon-scaffold_41-1510915933:423731..424681 | Clytia hemisphaerica | exon |
| TCONS_00064215-exon-scaffold_41-1491911889:425779..425791 | TCONS_00064215-exon-scaffold_41-1491911889:425779..425791 | Clytia hemisphaerica | exon |
| TCONS_00064215-exon-scaffold_41-1491911889:423731..424681 | TCONS_00064215-exon-scaffold_41-1491911889:423731..424681 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:423731..425791 - |
Blast
The following BLAST results are available for this feature:
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