TCONS_00064241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064241
Unique NameTCONS_00064241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064241 ID=TCONS_00064241|Name=TCONS_00064241|organism=Clytia hemisphaerica|type=transcript|length=2141bp
TTCGTGATAAAAATAGGATGAGATTTGAAATGTTCAGTGTGTTTCAAACA
ACATTGTTTAAAACTGAAACAAATGACAGAGATGGACTTAGAGGTATTCC
CGAATTAACGGATTCAAAGGAAGGGGAGAGTAGATCTCTATTTTAGGAGA
TATGAATAAAACAACTCTGCGCTCTTCCAACCTTGGCATCCTATGTGACA
ATTGTTGAAAATTACTCTACCGAAAAAAGCTGACATTTACATATTACTGC
AATCTCATATATGCTTTACTAGGTATAAAAGCGGaatctaaaaaaataat
aatcaatAATGATAAAAAGATCGTGGAATGTGAATATACAAGTAtgattt
tcaaagaaacaaataaacaaacaaagaaggaaatctaaaaattttatccA
TCGTCAGCATGAaggatttgaaataaaaatcagTGATACTTTATACGCGT
TGGCTGACTGTTGTTGATGATGCACTATTGAAAGAATAatacattcattc
attcattcattcattcgttgGTAGGTTTAGATGTTTTGATATTTAATCTC
GAGAAAGAGCAACAATCATTATTTACCGCATACGGAGCTGATTCATTGcg
atttgattttattgacaCTGTCAAATTGATAGGATCAAAAATCCAATAAT
TAACATTTAAAAGGAAATAGGAAAGAAggaaggaaagaaaaaattatata
cACTTGTATCTTGTACATGCTGACTCTAAGGAAAGAGAGAAATTTGGATA
CCCGTCGCTGTATTCAACTTTGAAACGATTTAAGCTTAATCTACTTATTA
AACATCCTTTTTATAAGTATCTTTTTAAATTGCTTTTTCCGTTAAATATC
TACCGCGTACCGTTAACAGTCAAAGTAAACTAAAGATGGAGGGGCCAGCT
CTGGGTACAGAAGATAACCAGGAATCAACAATGAATATCGAAGCTTTGAG
AGGACACAGTGGTATTGATGTGATGCCAGAGGTCACTGAATTAACCAAGA
GCTGCACATGCCCTACAGGAGACTGTGAAACCTCAGAAACTGCATATCGT
CGATGTCTTACGGTAAAATGTAGAACAGACGATCAATCACCAACTTCAGA
TAATTCTCGTCGTAGTAGAAAAGTACAGGAAAGGATGTATGGTGATATGG
CATCATCAAGTGCTTCAATAAATGCACatgagatttttcaaagtataAGT
TTAAATAATGACAATGAAATTCAATTGCATGAATGTTTATGCGAATCAAT
GCGTTTGCAAAACCCATCAGTAACTACAGATTCTATTAGGACTTTTAATT
CCAGCGACACATCAATTGAGGATAACCAAGAACAACTGAGGACAAATTTG
CCAGTACAGAATCTACCTTACGTTACTGTGAACCTAGGTTACGTGGAGAA
TGATGACGAGCTAGATACTGGCAATAAAGAACAAACGGCAACTCCTTCAC
CACCACCAGAATATAAGAGTCTGGTAAACTTGTTTCTGATTGATGCTCCA
CCGAAATATCAAGATGTAGTACCTGCCAAATCAAAAAGTGATGCTGTTAC
GGTGAAGATCATTGGTAAAGCAAACGGCGAGACAGTAGAAGTGCGATGTG
ATCGTAAAGCATTAACCACATGGTGTTTCATACTATCTATTATTGCAGTG
CTGGCAATTCTATCTATTCTGTTTGTTGTGTATAATATCTAGAGAGATAT
GAGATTCGATCTGGGGCTGATGAAAGTTACGGTAGATATGGATGATATAT
TTTACATGGATGGACCAGTAATGCGGTGCTTGCTTCCGATTGTTTCCATT
GATTTAACGACAAGCAGGCTTGGCTATCTATGGGCTGAATAGATGATGAA
ATAGCTGTGGATTCGAATCTTGATGCTGAATCCTAAGACCACTTCGTAAA
AAAACAGCACGCCATCTTGTTTCCAGAAATAGACTCTTGTGTGGAGCAAG
CTATAATATTAGCTCTTAAATACTTGTATCCTATTGGTTCAGACTCTGAA
ACCAGTATGTTTAATGATCCTCACGGTACTTGGTTGGTTGGTGATATATC
CCACATTTTGATTTATAAGTAAATCACATGAATGGaagatttcaagattt
tcagaaTTGGACCTGgttgataaaataaaatgctCAACGTA
Run BLAST on NCBI

protein sequence of TCONS_00064241-protein

>TCONS_00064241-protein ID=TCONS_00064241-protein|Name=TCONS_00064241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MEGPALGTEDNQESTMNIEALRGHSGIDVMPEVTELTKSCTCPTGDCETS
ETAYRRCLTVKCRTDDQSPTSDNSRRSRKVQERMYGDMASSSASINAHEI
FQSISLNNDNEIQLHECLCESMRLQNPSVTTDSIRTFNSSDTSIEDNQEQ
LRTNLPVQNLPYVTVNLGYVENDDELDTGNKEQTATPSPPPEYKSLVNLF
LIDAPPKYQDVVPAKSKSDAVTVKIIGKANGETVEVRCDRKALTTWCFIL
SIIAVLAILSILFVVYNI
Run BLAST on NCBI

transcript from alignment at scaffold_41:731410..734039-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064241 ID=TCONS_00064241|Name=TCONS_00064241|organism=Clytia hemisphaerica|type=transcript|length=2630bp|location=Sequence derived from alignment at scaffold_41:731410..734039- (Clytia hemisphaerica)
TTCGTGATAAAAATAGGATGAGATTTGAAATGTTCAGTGTGTTTCAAACA
ACATTGTTTAAAACTGAAACAAATGACAGAGATGGACTTAGAGGTATTCC
CGAATTAACGGATTCAAAGGAAGGGGAGAGTAGATCTCTATTTTAGGAGA
TATGAATAAAACAACTCTGCGCTCTTCCAACCTTGGCATCCTATGTGACA
ATTGTTGAAAATTACTCTACCGAAAAAAGCTGACATTTACATATTACTGC
AATCTCATATATGCTTTACTAGGTATAAAAGCGGAATCTAAAAAAATAAT
AATCAATAATGATAAAAAGATCGTGGAATGTGAATATACAAGTATGATTT
TCAAAGAAACAAATAAACAAACAAAGAAGGAAATCTAAAAATTTTATCCA
TCGTCAGCATGAAGGATTTGAAATAAAAATCAGTGATACTTTATACGCGT
TGGCTGACTGTTGTTGATGATGCACTATTGAAAGAATAATACATTCATTC
ATTCATTCATTCATTCGTTGGTAGGTTTAGATGTTTTGATATTTAATCTC
GAGAAAGAGCAACAATCATTATTTACCGCATACGGAGCTGATTCATTGCG
ATTTGATTTTATTGACACTGTCAAATTGATAGGATCAAAAATCCAATAAT
TAACATTTAAAAGGAAATAGGAAAGAAGGAAGGAAAGAAAAAATTATATA
CACTTGTATCTTGTACATGCTGACTCTAAGGAAAGAGAGAAATTTGGATA
CCCGTCGCTGTATTCAACTTTGAAACGATTTAAGCTTAATCTACTTATTA
AACATCCTTTTTATAAGTATCTTTTTAAATTGCTTTTTCCGTTAAATATC
TACCGCGTACCGTTAACAGTCAAAGTAAACTAAAGATGGAGGGGCCAGCT
CTGGGTACAGAAGATAACCAGGAATCAACAATGAATATCGAAGCTTTGAG
AGGACACAGTGGTATTGATGTGATGCCAGAGGTCACTGAATTAACCAAGA
GCTGCACATGCCCTACAGGAGACTGTGAAACCTCAGAAACTGCATATCGT
CGATGTCTTACGGTAAAATGTAGAACAGACGATCAATCACCAACTTCAGA
TAATTCTCGTCGTAGTAGAAAAGTACAGGAAAGGATGTATGGTGATATGG
CATCATCAAGTGCTTCAATAAATGCACATGAGATTTTTCAAAGTATAAGT
TTAAATAATGACAATGAAATTCAATTGCATGAATGTTTATGCGAATCAAT
GCGTTTGCAAAACCCATCAGTAACTACAGATTCTATTAGGACTTTTAATT
CCAGCGACACATCAATTGAGGATAACCAAGAACAACTGAGGACAAATTTG
CCAGTACAGAATCTACCTTACGTTACTGTGAACCTAGGTTACGTGGAGAA
TGATGACGAGCTAGATACTGGCAATAAAGAACAAACGGCAACTCCTTCAC
CACCACCAGAATATAAGAGTCTGGTAAACTTGTTTCTGATTGATGCTCCA
CCGAAATATCAAGATGTAGTACCTGCCAAATCAAAAAGTGATGCTGTAAG
TATTCTTCAAATTGTCTATTACTAGTCTTTGCAACGGTGTAATTTGCGAA
TAGCCTAAATAGCCCTGGAAATTTTAGCCCGAGAAAGCCCGGTGGAACAA
CCGTTTAAGTGGGGAGGCTGAAGTCTCCTTAGTCTCCCCGCTTCCGCCAG
GCCTGGAAAGTGACATATTTTTGGATACAAATTATTTAAATCCCCTTTGA
GGGTCTTGTACCAGCATTTTCTATAATGGCCTGAGACTGAAACCCTAAAA
ACAAAACTAAAAACAGCTGAGACTGAGCAAACATTATAAATTATAAAATT
AGAGTAAAAGCTTGGGGACACGATAAGTTTTTTTCCGCGTTGGTGTGGAG
TGGAGACACGATAAAGCGTTTCAGGTTGGTGGGATGGAGCATGTTGCATT
GCACCAGCGCAAAAAAACCCAAGCCTTAAATCTGTGTTGCAATTTTACTC
ATTAAACTAAAATATTGTCTTTCGCCTTATTCAGGTTACGGTGAAGATCA
TTGGTAAAGCAAACGGCGAGACAGTAGAAGTGCGATGTGATCGTAAAGCA
TTAACCACATGGTGTTTCATACTATCTATTATTGCAGTGCTGGCAATTCT
ATCTATTCTGTTTGTTGTGTATAATATCTAGAGAGATATGAGATTCGATC
TGGGGCTGATGAAAGTTACGGTAGATATGGATGATATATTTTACATGGAT
GGACCAGTAATGCGGTGCTTGCTTCCGATTGTTTCCATTGATTTAACGAC
AAGCAGGCTTGGCTATCTATGGGCTGAATAGATGATGAAATAGCTGTGGA
TTCGAATCTTGATGCTGAATCCTAAGACCACTTCGTAAAAAAACAGCACG
CCATCTTGTTTCCAGAAATAGACTCTTGTGTGGAGCAAGCTATAATATTA
GCTCTTAAATACTTGTATCCTATTGGTTCAGACTCTGAAACCAGTATGTT
TAATGATCCTCACGGTACTTGGTTGGTTGGTGATATATCCCACATTTTGA
TTTATAAGTAAATCACATGAATGGAAGATTTCAAGATTTTCAGAATTGGA
CCTGGTTGATAAAATAAAATGCTCAACGTA

Coding sequence (CDS) from alignment at scaffold_41:731410..734039-

>TCONS_00064241 ID=TCONS_00064241|Name=TCONS_00064241|organism=Clytia hemisphaerica|type=CDS|length=1614bp|location=Sequence derived from alignment at scaffold_41:731410..734039- (Clytia hemisphaerica)
GTTACGGTGAAGATCATTGGTAAAGCAAACGGCGAGACAGTAGAAGTGCG
ATGTGATCGTAAAGCATTAACCACATGGTGTTTCATACTATCTATTATTG
CAGTGCTGGCAATTCTATCTATTCTGTTTGTTGTGTATAATATCTAGATG
GAGGGGCCAGCTCTGGGTACAGAAGATAACCAGGAATCAACAATGAATAT
CGAAGCTTTGAGAGGACACAGTGGTATTGATGTGATGCCAGAGGTCACTG
AATTAACCAAGAGCTGCACATGCCCTACAGGAGACTGTGAAACCTCAGAA
ACTGCATATCGTCGATGTCTTACGGTAAAATGTAGAACAGACGATCAATC
ACCAACTTCAGATAATTCTCGTCGTAGTAGAAAAGTACAGGAAAGGATGT
ATGGTGATATGGCATCATCAAGTGCTTCAATAAATGCACATGAGATTTTT
CAAAGTATAAGTTTAAATAATGACAATGAAATTCAATTGCATGAATGTTT
ATGCGAATCAATGCGTTTGCAAAACCCATCAGTAACTACAGATTCTATTA
GGACTTTTAATTCCAGCGACACATCAATTGAGGATAACCAAGAACAACTG
AGGACAAATTTGCCAGTACAGAATCTACCTTACGTTACTGTGAACCTAGG
TTACGTGGAGAATGATGACGAGCTAGATACTGGCAATAAAGAACAAACGG
CAACTCCTTCACCACCACCAGAATATAAGAGTCTGGTAAACTTGTTTCTG
ATTGATGCTCCACCGAAATATCAAGATGTAGTACCTGCCAAATCAAAAAG
TGATGCTGTTACGGTGAAGATCATTGGTAAAGCAAACGGCGAGACAGTAG
AAGTGCGATGTGATCGTAAAGCATTAACCACATGGTGTTTCATACTATCT
ATTATTGCAGTGCTGGCAATTCTATCTATTCTGTTTGTTGTGTATAATAT
CTAGATGGAGGGGCCAGCTCTGGGTACAGAAGATAACCAGGAATCAACAA
TGAATATCGAAGCTTTGAGAGGACACAGTGGTATTGATGTGATGCCAGAG
GTCACTGAATTAACCAAGAGCTGCACATGCCCTACAGGAGACTGTGAAAC
CTCAGAAACTGCATATCGTCGATGTCTTACGGTAAAATGTAGAACAGACG
ATCAATCACCAACTTCAGATAATTCTCGTCGTAGTAGAAAAGTACAGGAA
AGGATGTATGGTGATATGGCATCATCAAGTGCTTCAATAAATGCACATGA
GATTTTTCAAAGTATAAGTTTAAATAATGACAATGAAATTCAATTGCATG
AATGTTTATGCGAATCAATGCGTTTGCAAAACCCATCAGTAACTACAGAT
TCTATTAGGACTTTTAATTCCAGCGACACATCAATTGAGGATAACCAAGA
ACAACTGAGGACAAATTTGCCAGTACAGAATCTACCTTACGTTACTGTGA
ACCTAGGTTACGTGGAGAATGATGACGAGCTAGATACTGGCAATAAAGAA
CAAACGGCAACTCCTTCACCACCACCAGAATATAAGAGTCTGGTAAACTT
GTTTCTGATTGATGCTCCACCGAAATATCAAGATGTAGTACCTGCCAAAT
CAAAAAGTGATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040268XLOC_040268Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064241-proteinTCONS_00064241-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064241-exon-scaffold_41-1575043694:732495..734039TCONS_00064241-exon-scaffold_41-1575043694:732495..734039Clytia hemisphaericaexon
TCONS_00064241-exon-scaffold_41-1575043694:731410..732005TCONS_00064241-exon-scaffold_41-1575043694:731410..732005Clytia hemisphaericaexon
TCONS_00064241-exon-scaffold_41-1510915933:732495..734039TCONS_00064241-exon-scaffold_41-1510915933:732495..734039Clytia hemisphaericaexon
TCONS_00064241-exon-scaffold_41-1510915933:731410..732005TCONS_00064241-exon-scaffold_41-1510915933:731410..732005Clytia hemisphaericaexon
TCONS_00064241-exon-scaffold_41-1491911889:732495..734039TCONS_00064241-exon-scaffold_41-1491911889:732495..734039Clytia hemisphaericaexon
TCONS_00064241-exon-scaffold_41-1491911889:731410..732005TCONS_00064241-exon-scaffold_41-1491911889:731410..732005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:731410..734039 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.183632	0.125349	0.145542	0.305123	1.21343	0.841455	0.566612	1.28193	0.758242	2.91345	2.36276	0.953925	0.879322	0.20293	0.208545	0.290941	1.28202	0.310846	0.507533	1.42988	0.497129	0.545585	1.3054	2.71816	2.07016	4.46935	17.525	16.3921	72.8036	46.8476
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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