TCONS_00064276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064276
Unique NameTCONS_00064276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064276 ID=TCONS_00064276|Name=TCONS_00064276|organism=Clytia hemisphaerica|type=transcript|length=612bp
CAAATTAAGGTTTAAACATGAGTAACATAAATGGCTTACGTAAAGGAATG
ATAAGGGATTTCAGGGTctctacggatttttttcaccattttaaaggttt
tcaagttttttttttggcaaaattgtagtgttttttcaagtttttctgga
acattttttgggtactttcaaggtttttcaGAACTAAAATTAACTCAAAT
AGTAGGATGTGACTGTGTTGACAAGTTGCATGAGAGGTTACTACCAGTAT
TTGGTGTAGAAAAAATGATTGTGTGCAAAgtaagcaaaaaaactttttaa
gcttTAGCATAGACCAAAACTCCAGTGATGACCCAGGCCAAAACAAGACA
ACTATACTGTCACAATCATGCATTTTCAAGGCTTTCAAGGAATTCTTTCA
GATTACATTcactttcaaggttttcaaggttgcttagtccaatttcaagg
ttttcaaagttttcaaggtcccgtagacaccctggatttctttaattttt
tcattgtgACCAAAATGTCCAAACCTTTTCACCTTAGCATTTTCTGAAGT
AACGCAAGTTATTTATAAGATTTATGAGACTAGAATATGAAAATTGACTT
ACCAAAATACAT
Run BLAST on NCBI

transcript from alignment at scaffold_41:568703..569314

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064276 ID=TCONS_00064276|Name=TCONS_00064276|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at scaffold_41:568703..569314 (Clytia hemisphaerica)
ATGTATTTTGGTAAGTCAATTTTCATATTCTAGTCTCATAAATCTTATAA
ATAACTTGCGTTACTTCAGAAAATGCTAAGGTGAAAAGGTTTGGACATTT
TGGTcacaatgaaaaaattaaagaaatccagggtgtctacgggaccttga
aaactttgaaaaccttgaaattggactaagcaaccttgaaaaccttgaaa
gtgAATGTAATCTGAAAGAATTCCTTGAAAGCCTTGAAAATGCATGATTG
TGACAGTATAGTTGTCTTGTTTTGGCCTGGGTCATCACTGGAGTTTTGGT
CTATGCTAaagcttaaaaagtttttttgcttacTTTGCACACAATCATTT
TTTCTACACCAAATACTGGTAGTAACCTCTCATGCAACTTGTCAACACAG
TCACATCCTACTATTTGAGTTAATTTTAGTTCtgaaaaaccttgaaagta
cccaaaaaatgttccagaaaaacttgaaaaaacactacaattttgccaaa
aaaaaaacttgaaaacctttaaaatggtgaaaaaaatccgtagagACCCT
GAAATCCCTTATCATTCCTTTACGTAAGCCATTTATGTTACTCATGTTTA
AACCTTAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040296XLOC_040296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064276-exon-scaffold_41-1491911889:568703..569314TCONS_00064276-exon-scaffold_41-1491911889:568703..569314Clytia hemisphaericaexon
TCONS_00064276-exon-scaffold_41-1510915933:568703..569314TCONS_00064276-exon-scaffold_41-1510915933:568703..569314Clytia hemisphaericaexon
TCONS_00064276-exon-scaffold_41-1575043694:568703..569314TCONS_00064276-exon-scaffold_41-1575043694:568703..569314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:568703..569314 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.616239	0.257541	0.498384	1.0727	0.474876	0.28144	15.7911	15.682	4.822	4.31881	2.05138	2.63836	0.644036	0.608034	0.399909	0.804683	0	0.88058	0	0.100129	0.766047	0.747302	0.403753	0.36707	0	0.759198	0.844986	1.28827	0.879399	0.307121
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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