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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064284 ID=TCONS_00064284|Name=TCONS_00064284|organism=Clytia hemisphaerica|type=transcript|length=1323bp
taaaaattgaaattcatgaTATATTTGGTGCTCTCTGATTCGATTTCAAG
GGGGATTTTTTTCGAAGAATGGACCGTATCGAATTGTAGATAGTTTCTTg
ctgacggtgactttcaatattattaaATAATAAATCGTTAGTAGAAtgtt
gaattagagagcgtcgactTTAGATAAAAACTTTCCGAAATTTATAacca
attttgaatattttctcttGCTCTTCACCACGCTTACAATCACATGTGCT
TCAAGAGTTCCAATCGAGCTTCGATTTTATGGATCCATTTCTTATCATCA
GAATCACCACACATCTTCATGAAAGGTTTCCAATAAGCGAACGTCAGGGG
GACCATATCAGCAATCGCAAGACTATTGCGACAGTATTTATACTGGAAGC
CACCCCCTGGATACTCGCTACCGTCTCTGATATCAATAACTTTGGAGATG
TATGAATTGGTTGTGTCGTAGTAACGGCATTTGTGAGAACTGTTTGTCAG
TTCCTTTCGGACGTCTTCGATTCTTGAATCCAGATATTTCGGGATATCTT
CATCTTTAGGCCAAACTAAACGATCTTCTTTCCACAACACGTAACTTTCT
TCTAATTTGACTTTGATATAACGGCAGCTATATCCTTTGGTGGTTTTAAC
AGCTCTGGTCAAATAAGTAGCAAACTTTTTAGCTTTGAATTTGATATCAC
GGTCGATGGACGCTTGCATTGTTGGACTGGACATGTTACGAAGCACGTGT
GACACAGACATATAAGTTGTCACAAAGATATCGTAATATTTAATAGACAT
TGCAATCTCTTTAGTAGTGGTACCACGAAACAGAGGTTCATAACCTGATA
AATCTTCTTGCAGATTCTTGTAGCATGAAAAACGAATAGTAGGGTTGATT
TTTCGTTTACACGATTGGACTCGATTCGACATTGATTGATGCCATTGGTT
CATCGATTTGATCGTATACGCGTCAAATTTCTCATCAATCAGTTTTTCCA
CATCTTTTTTCACCAAATCCCAGGGTTTAGGATCAATACCAAACCAATAA
TCCAGGGCGAAAATAAGGACGGCACCTGCTGGAACGTGATTGGCTAATCC
ACGTACGCCCATGCATACATAAGCTTTGCCAGGTTCGTTGGGAAAGGAAT
ATTTACATAACTGTTCCTCTTGACTTAAACCACCTGTCTCTGGTAGGTTT
CCCAGGCTTAATAAGCTGACCAACAAAAGGATCTTAGAAAAACCCATTTT
TGGTTGATCTGTCGCAGCGTCGCGTTGTGTTTTAGTTTGATTCAAAGGCG
CAGTACTACCATATGATTTCGTG Run BLAST on NCBI protein sequence of TCONS_00064284-protein >TCONS_00064284-protein ID=TCONS_00064284-protein|Name=TCONS_00064284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
TKSYGSTAPLNQTKTQRDAATDQPKMGFSKILLLVSLLSLGNLPETGGLS
QEEQLCKYSFPNEPGKAYVCMGVRGLANHVPAGAVLIFALDYWFGIDPKP
WDLVKKDVEKLIDEKFDAYTIKSMNQWHQSMSNRVQSCKRKINPTIRFSC
YKNLQEDLSGYEPLFRGTTTKEIAMSIKYYDIFVTTYMSVSHVLRNMSSP
TMQASIDRDIKFKAKKFATYLTRAVKTTKGYSCRYIKVKLEESYVLWKED
RLVWPKDEDIPKYLDSRIEDVRKELTNSSHKCRYYDTTNSYISKVIDIRD
GSEYPGGGFQYKYCRNSLAIADMVPLTFAYWKPFMKMCGDSDDKKWIHKI
EARLELLKHM Run BLAST on NCBI transcript from alignment at scaffold_41:739428..740750 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064284 ID=TCONS_00064284|Name=TCONS_00064284|organism=Clytia hemisphaerica|type=transcript|length=1323bp|location=Sequence derived from alignment at scaffold_41:739428..740750 (Clytia hemisphaerica)
CACGAAATCATATGGTAGTACTGCGCCTTTGAATCAAACTAAAACACAAC
GCGACGCTGCGACAGATCAACCAAAAATGGGTTTTTCTAAGATCCTTTTG
TTGGTCAGCTTATTAAGCCTGGGAAACCTACCAGAGACAGGTGGTTTAAG
TCAAGAGGAACAGTTATGTAAATATTCCTTTCCCAACGAACCTGGCAAAG
CTTATGTATGCATGGGCGTACGTGGATTAGCCAATCACGTTCCAGCAGGT
GCCGTCCTTATTTTCGCCCTGGATTATTGGTTTGGTATTGATCCTAAACC
CTGGGATTTGGTGAAAAAAGATGTGGAAAAACTGATTGATGAGAAATTTG
ACGCGTATACGATCAAATCGATGAACCAATGGCATCAATCAATGTCGAAT
CGAGTCCAATCGTGTAAACGAAAAATCAACCCTACTATTCGTTTTTCATG
CTACAAGAATCTGCAAGAAGATTTATCAGGTTATGAACCTCTGTTTCGTG
GTACCACTACTAAAGAGATTGCAATGTCTATTAAATATTACGATATCTTT
GTGACAACTTATATGTCTGTGTCACACGTGCTTCGTAACATGTCCAGTCC
AACAATGCAAGCGTCCATCGACCGTGATATCAAATTCAAAGCTAAAAAGT
TTGCTACTTATTTGACCAGAGCTGTTAAAACCACCAAAGGATATAGCTGC
CGTTATATCAAAGTCAAATTAGAAGAAAGTTACGTGTTGTGGAAAGAAGA
TCGTTTAGTTTGGCCTAAAGATGAAGATATCCCGAAATATCTGGATTCAA
GAATCGAAGACGTCCGAAAGGAACTGACAAACAGTTCTCACAAATGCCGT
TACTACGACACAACCAATTCATACATCTCCAAAGTTATTGATATCAGAGA
CGGTAGCGAGTATCCAGGGGGTGGCTTCCAGTATAAATACTGTCGCAATA
GTCTTGCGATTGCTGATATGGTCCCCCTGACGTTCGCTTATTGGAAACCT
TTCATGAAGATGTGTGGTGATTCTGATGATAAGAAATGGATCCATAAAAT
CGAAGCTCGATTGGAACTCTTGAAGCACATGTGATTGTAAGCGTGGTGAA
GAGCaagagaaaatattcaaaattggtTATAAATTTCGGAAAGTTTTTAT
CTAAagtcgacgctctctaattcaacaTTCTACTAACGATTTATTATtta
ataatattgaaagtcaccgtcagcAAGAAACTATCTACAATTCGATACGG
TCCATTCTTCGAAAAAAATCCCCCTTGAAATCGAATCAGAGAGCACCAAA
TATAtcatgaatttcaattttta Coding sequence (CDS) from alignment at scaffold_41:739428..740750 >TCONS_00064284 ID=TCONS_00064284|Name=TCONS_00064284|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at scaffold_41:739428..740750 (Clytia hemisphaerica)
ACGAAATCATATGGTAGTACTGCGCCTTTGAATCAAACTAAAACACAACG
CGACGCTGCGACAGATCAACCAAAAATGGGTTTTTCTAAGATCCTTTTGT
TGGTCAGCTTATTAAGCCTGGGAAACCTACCAGAGACAGGTGGTTTAAGT
CAAGAGGAACAGTTATGTAAATATTCCTTTCCCAACGAACCTGGCAAAGC
TTATGTATGCATGGGCGTACGTGGATTAGCCAATCACGTTCCAGCAGGTG
CCGTCCTTATTTTCGCCCTGGATTATTGGTTTGGTATTGATCCTAAACCC
TGGGATTTGGTGAAAAAAGATGTGGAAAAACTGATTGATGAGAAATTTGA
CGCGTATACGATCAAATCGATGAACCAATGGCATCAATCAATGTCGAATC
GAGTCCAATCGTGTAAACGAAAAATCAACCCTACTATTCGTTTTTCATGC
TACAAGAATCTGCAAGAAGATTTATCAGGTTATGAACCTCTGTTTCGTGG
TACCACTACTAAAGAGATTGCAATGTCTATTAAATATTACGATATCTTTG
TGACAACTTATATGTCTGTGTCACACGTGCTTCGTAACATGTCCAGTCCA
ACAATGCAAGCGTCCATCGACCGTGATATCAAATTCAAAGCTAAAAAGTT
TGCTACTTATTTGACCAGAGCTGTTAAAACCACCAAAGGATATAGCTGCC
GTTATATCAAAGTCAAATTAGAAGAAAGTTACGTGTTGTGGAAAGAAGAT
CGTTTAGTTTGGCCTAAAGATGAAGATATCCCGAAATATCTGGATTCAAG
AATCGAAGACGTCCGAAAGGAACTGACAAACAGTTCTCACAAATGCCGTT
ACTACGACACAACCAATTCATACATCTCCAAAGTTATTGATATCAGAGAC
GGTAGCGAGTATCCAGGGGGTGGCTTCCAGTATAAATACTGTCGCAATAG
TCTTGCGATTGCTGATATGGTCCCCCTGACGTTCGCTTATTGGAAACCTT
TCATGAAGATGTGTGGTGATTCTGATGATAAGAAATGGATCCATAAAATC
GAAGCTCGATTGGAACTCTTGAAGCACATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064284-exon-scaffold_41-1491911889:739428..740750 | TCONS_00064284-exon-scaffold_41-1491911889:739428..740750 | Clytia hemisphaerica | exon |
| TCONS_00064284-exon-scaffold_41-1510915933:739428..740750 | TCONS_00064284-exon-scaffold_41-1510915933:739428..740750 | Clytia hemisphaerica | exon |
| TCONS_00064284-exon-scaffold_41-1575043694:739428..740750 | TCONS_00064284-exon-scaffold_41-1575043694:739428..740750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:739428..740750 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005639 | Pest_crys_N |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0090729 | toxin activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0090729 |
toxin activity |
Blast
The following BLAST results are available for this feature:
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