TCONS_00064296 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064296
Unique Name	TCONS_00064296
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2311

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_410:31762..37281+
coding sequence from alignment at scaffold_410:31762..37281+

transcript sequence

>TCONS_00064296 ID=TCONS_00064296|Name=TCONS_00064296|organism=Clytia hemisphaerica|type=transcript|length=2311bp
acatATTGGGTGGATAATTTcgaaagttctcagaagactctccagtggtg
catatcatgaataaacgAATTTTGGAATTGTTATTATATGTTACAATGAT
TTATATGTGTCAGTAATGAAATACACAGCATATTCTATTTTTTCTAACGC
ATGCGCGCAGTGAATCATGTCAACAATCAATCATGAAGCAAGCGCAAGAC
GAAAATCGATGTAACATAGATCTATTGAATCATTTCTGGTGTATGGTGAC
GTCACTCTATTTGATTATGCTGGGTGGTGTTCGAAGTATCAAACCTCTCT
CACTTTTCGATACGAAGGGGAAACATGCATTTACTTTCGCTTTGTATTCA
TCACCAGTCCTTTCTAATGAGGTTGATGACAAAATCAACAAATGTAGAAG
AGAGTTTTGTTTGAATGGAATCCAGTGCATCATCAAACAACATATTGATC
TGACTTTCCAAGATGAACGAGCACGAAATAACACGTCAGACCTCTTGCAC
ACCATGTCTACCATATTTTCACTGACGTCAGCATTCCATTTGAGTTGCGA
AGATGCTCGACAATTCGCGGCGTGTGAATTGTACAGAGTTGGTTTGGATC
TAGCGGCTCAAGAGGTTTCCATGGTGATCGAAGACAAACAAACCTTCTCA
ACACGAATGATCGACGTTGTTGGTGGACGAATCGCTAAAACCTTACTATC
TGGTGAAACCCAACATCTTTCGGACTCCTTAAGTAAATTACCCACAAATA
TTTCATCATGGCTGGCTAAACTGgagaaaaatacgaGCAATGTTGCAGAG
CTACCCATATCGAAGACCTACTTGCTTTTACAATATTTGAACTCACATCT
TATTGAACACACGACTAAAGAAGCAAAATTTATCAAAGAATTGATCGAAT
GTCTCAAAGTGTTTGTTTGAGGGAGAAGTTGTTGGTAGTGAATTTGGAGA
ATGGGCAAAAGGATTAGATAGTGGATCGTACACTACGATGCGTGGTAGTC
ATTGGCAACGGTTGACGTGAAAGGGTTTTGAAGATGAGATTAATCGAGCT
ATTGTTGGAAAATAACATTTGGATCTAGGGACAATAGTGACATTGGCATA
TGGAGAAGCACCGACTGGTttgttgttgaaaaaaaaattttgtcacgAGA
AACacagaaaataaatttcttgaGCAGGGGAATGTGTTTTTTATGGTGAA
GGCAGAAGAAGCCGAAATTGATGTGCGATAAAAACTCAAAAGACAATTGA
ATATAAAAAGTGAATTGAAAAAGCTCAAATATATTATGTCACGTTGAGCA
ATACAGTgtctaaagaaatttcaaaaggcAACACTACTAGAAGATGTACT
CAAATCGAAACAATTCTGTGCACAAAACAGTGGTACAGGGAGTATATTTG
GCATCTTTGGCACTGTCAAGATTGGAAATTGTTTGCCCATAATGCGATGT
ATCAGAAAGCCCTGGAAAGCCCATAATTCATACTTCCTTATGCATTCCTG
TAAAAGATCAAaaactttaatgggataaactttcgcggagattaaatttc
gcggatttcgtggatttgggtgtcatccgcgaaaatccacgaaattaaat
cccaatggaaatttggaagggcctcatccgtgAAATATTTCTAACCaata
ctcaaaatatgtcaaataaatactttttgaatagttacttgcatcaaaaa
agcgcaaataatgtgtatttcaacaaccaatatcCTTGATTTGACAGTAC
AAAGAcacaaaaacgtgaaaatattgtcacccaatagtgccacctgCGAA
ACCTCTTAGGGTATTATACCTTGATGATGCAGCCAGTTGAATGATACAAT
GGCACCATTTCGTTCGTTTGATTATTTGATTTATATAGATAaaacagtgg
agtctccataactcgaaccttcacgggaacgcaaatttgttcgagttatg
gagtgaGATTTATGAGACACTTTTAACTAAAGGGACTAGAAAACTCGTTC
GAATTAAGGTaacattcgagttgtagaggttcgaattatggagactccat
tgtATTATAATTACACACTTTTCACcaattaaattttatttattctATGG
AAAAAGACTATTTGGAATGATCTGAATAAAATAAATAGAGAACGAATACG
AATCGATTTGATTGAATGAAGTCTTGTATTCGTTGGCTTCAGTGTTTAAT
AATGATTTTATTTTGCCGttattatttttagaatttaatgaaaaaatagt
ttatttATATTACAGTATTTGAATTGCAATTTGATACATATATTTGATAC
ATTATTAACGC

Run BLAST on NCBI

protein sequence of TCONS_00064296-protein

>TCONS_00064296-protein ID=TCONS_00064296-protein|Name=TCONS_00064296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MKQAQDENRCNIDLLNHFWCMVTSLYLIMLGGVRSIKPLSLFDTKGKHAF
TFALYSSPVLSNEVDDKINKCRREFCLNGIQCIIKQHIDLTFQDERARNN
TSDLLHTMSTIFSLTSAFHLSCEDARQFAACELYRVGLDLAAQEVSMVIE
DKQTFSTRMIDVVGGRIAKTLLSGETQHLSDSLSKLPTNISSWLAKLEKN
TSNVAELPISKTYLLLQYLNSHLIEHTTKEAKFIKELIECLKVFV

Run BLAST on NCBI

transcript from alignment at scaffold_410:31762..37281+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064296 ID=TCONS_00064296|Name=TCONS_00064296|organism=Clytia hemisphaerica|type=transcript|length=5520bp|location=Sequence derived from alignment at scaffold_410:31762..37281+ (Clytia hemisphaerica)
acatATTGGGTGGATAATTTcgaaagttctcagaagactctccagtggtg
catatcatgaataaacgAATTTTGGAATTGTTATTATATGTTACAATGAT
TTATATGTGTCAGTAATGAAATACACAGCATATTCTATTTTTTCTAACGC
ATGCGCGCAGTGAATCATGTCAACAATCAATCATGAAGCAAGCGCAAGAC
GAAAATCGATGTAACATAGATCTATTGAATCATTTCTGGTGTATGGTGAC
GTCACTCTATTTGATTATGCTGGGTGGTGTTCGAAGTATCAAACCTCTCT
CACTTTTCGATACGAAGGTAAGAGATTCATCAAATAATTTCATACGTATC
Tagccttcggatgctcttaacttttttagttttaagcctaaaaatattct
cgacatgttcttattttcaccattttgtgagcattttttaccattttcct
aggaaatcaggtgttttagaatCCGCAAAGcattaaaataatctttaatT
TTGCTAAATACTTtgcccatcgaagccttatgttcttatatagttttttc
ttataaaaaaggattCTTTTAGTCAAATACATCggagtctccttaactcg
aaccacTATTACTCGAATTTTTCCTTAACtctaactcgaacaaatttgct
gGTCCCTCCACTTCACAAACACCTataaaaggaaaaaatcaaaatataat
agccgcattatttttcatcattCAACACAAACTCTTATAAATAAACAAGT
ATAActataacttgaaatttccttgATAATCTTATCGGATCATATGACTT
TCCGTGGCTAAAAGTTTTTACTCAAACagctaattttcttttttcttatt
aCAGGGGAAACATGCATTTACTTTCGCTTTGTATTCATCACCAGTCCTTT
CTAATGAGGTTGATGACAAAATCAACAAATGTAGAAGAGAGGTAACACAT
CTTTAAAATAATGCTCTCAtgtaaagtttttgttttttatataagaacat
ccaaaaattgtGAAGCCTTTTGGTgttattaatttttcgagtttaaGCCT
TATTTGTACTAGGGCTGGCGGCTTTTTATGttcggagaaaattttttgag
aagTTTGGCGTTTAAGAGTCCACAGTGTGAGAAGGCTCTTTAAGCTAGGG
TTCTTAAGGTTGTCGGTTCAGTTTAACTTTTACTCATTTCTCTGATCCGT
TCTAGTTTTGTTTGAATGGAATCCAGTGCATCATCAAACAACATATTGAT
CTGACTTTCCAAGATGAACGAGCACGAAATAACACGTCAGACCTCTTGCA
CACCATGTCTACCATATTTTCACTGACGTCAGCATTCCATTTGAGTTGCG
AAGATGCTCGACAATTCGCGGCGTGTGAATTGTACAGAGTTGGTTTGGAT
CTAGCGGCTCAAGAGGTGAGTGGATTTTTCTTTTCACTAAAAAAAAGCTT
TGACCGATTAAGAACGGAATAGTTTAATAGGGATCTGAGACATCTGATCG
CGGGATGAGAGTTACAGTCAatcctctctaattcgaacctctattattcg
aacctctactattcaaactaaaatattcatgatatgcaccattgcaatgt
cttccacggacccaacagctgattggttgcaagtgacgtattgactgatt
ttacgtacCACTTGTAACCAATTAGCTATTGGGTcggtgatgtaatgtca
gaagacattgcaatggtgcatatcatgaattggtcccctcagctagaaAG
TCGTATAAAATAGTCTCTGTAATTTgaatatttctctaattcgaagaaaa
ttcttggtcccttgaagatcgaattagagagagtaaaCTGTACCTCAAAC
TTCAAGTACTGCTGAAGTAGATTTATCGACATATTCTCCCTTTTCCAACT
TATATTTGGTCTCCCATTTTCTTTATGTTAAGTTGGAAGAAAATATCGAC
AAGCATCTTAACATTTTTAGCTAATATTTACCAACGTTTTGATTCTGTAG
AAACTTGACCACAAATCCAAATGAACTTTCTAAATTCTCACTTAAAAAGT
TTCCAAAACGTTAAAATGGAATGGAAAATCTACAAAGGGACGGATATCTC
ACTGTATATCGTGCTTATGACTATCTTTCCAAACGTTCGCTCAACATTCA
AATGATGAACAAATTTCCTGTGTAAATGAACATTTCTAAGACGAGACGAA
CTAAGCTAGCCACCCTACAAAAGATATGCAAAGAATTATTTTCCCGTTTG
TTTTTTCCTTATTTCAAACGTTTGAATGTTAAAGCgaacttttgaaaata
tagcCATAAGAGTATAAACGTTAACAACTTTTCGATTCTCATTAAAATCA
TCTCCATGACATCATTCAAAGGTTTCCATGGTGATCGAAGACAAACAAAC
CTTCTCAACACGAATGATCGACGTTGTTGGTGGACGAATCGCTAAAACCT
TACTATCTGGTGAAACCCAACATCTTTCGGACTCCTTAAGTAAATTACCC
ACAAATATTTCATCATGGCTGGCTAAACTGGtatgtttttataatttttg
ttaaattgtGGCAGATATTGGAAAGATAGATGAAATGACAGGTAAAATAG
ATATAGGTAGGGTAGGTAGGTAATTAAGCGCAGGTAGTTTAGCAAATAGT
TTATACTTAAAGGATAATCAATTGGTTCAAGATATGTTGCCTGTAGATTT
GTTCAGTGTTTCTGAGCTAAACCTCCAAATCTTTTTGTCTAGCTCTTTTC
CAGAGTCGAGATATCAGAGTTACgagttttttacttttagcaagaaaaca
atggaattccaACGCAAGAGCCCGTGTACAAGCActtattttcaaagatt
tcaaattgTCATATCTCGACTTTCGTAAAGACTTAGACAAAAAGATAAGT
TTTGTTGAGGATTATGGAACGAATGTACAGGCCAAACATCATCTGTTTAT
CTTTTTAAACCACTTTCCCGAGTTTTATAAGGATGAGACAGAAAGACAGC
TAGAGATTTCAGAAATAGTGGTAGAAATGCCTGTCTAGATATTATAATAG
AGATCCGAAACCTCGTCAAAActgcttttaggggcggttcagaactaggg
ggggggggctttccTGTACAACCCCTAAACTTTTggtctagtgggtcttt
ttggatgaaatttggcacacaaaaTCCTTGTCActtaagacaaaaaaaaa
tttttgatgacgtcactcatcatgcgcAAAgctcttataaatagctattg
tgttctaacaaaggctttagaaaaaagttgcctgagtttaaaatgcttat
tttatcctaaatattcaatgaaTTACGGCtcaaacgatatatttgacata
aaaaataaatttgtattggaaaagtgtaaATTTTTGTGACatcttactgt
cagaaatgtcatcatgctcaaggtgtgaaaatttttaggtgtcaagtttt
tttttattttaaagctaaataaaagttaggaatttacagaaaatttcatg
gcaaaagctttattatttcaggcgctattaccaataatttgacctcNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTAGGTCG
AAAAGGGTTAACATTCACAACCTATTTTGGTGCTAATTTAGTGCTCAttc
tattaatttttcttttttctcttttattataggagaaaaatacgaGCAAT
GTTGCAGAGCTACCCATATCGAAGACCTACTTGCTTTTACAATATTTGAA
CTCACATCTTATTGAACACACGACTAAAGAAGCAAAATTTATCAAAGAAT
TGATCGAATGTCTCAAAGTGTTTGTTTGAGGGAGAAGTTGTTGGTAGTGA
ATTTGGAGAATGGGCAAAAGGATTAGATAGTGGATCGTACACTACGATGC
GTGGTAGTCATTGGCAACGGTTGACGTGAAAGGGTTTTGAAGATGAGATT
AATCGAGCTATTGTTGGAAAATAACATTTGGATCTAGGGACAATAGTGAC
ATTGGCATATGGAGAAGCACCGACTGGTttgttgttgaaaaaaaaatttt
gtcacgAGAAACacagaaaataaatttcttgaGCAGGGGAATGTGTTTTT
TATGGTGAAGGCAGAAGAAGCCGAAATTGATGTGCGATAAAAACTCAAAA
GACAATTGAATATAAAAAGTGAATTGAAAAAGCTCAAATATATTATGTCA
CGTTGAGCAATACAGTgtctaaagaaatttcaaaaggcAACACTACTAGA
AGATGTACTCAAATCGAAACAATTCTGTGCACAAAACAGTGGTACAGGGA
GTATATTTGGCATCTTTGGCACTGTCAAGATTGGAAATTGTTTGCCCATA
ATGCGATGTATCAGAAAGCCCTGGAAAGCCCATAATTCATACTTCCTTAT
GCATTCCTGTAAAAGATCAAaaactttaatgggataaactttcgcggaga
ttaaatttcgcggatttcgtggatttgggtgtcatccgcgaaaatccacg
aaattaaatcccaatggaaatttggaagggcctcatccgtgAAATATTTC
TAACCaatactcaaaatatgtcaaataaatactttttgaatagttacttg
catcaaaaaagcgcaaataatgtgtatttcaacaaccaatatcCTTGATT
TGACAGTACAAAGAcacaaaaacgtgaaaatattgtcacccaatagtgcc
acctgCGAAACCTCTTAGGGTATTATACCTTGATGATGCAGCCAGTTGAA
TGATACAATGGCACCATTTCGTTCGTTTGATTATTTGATTTATATAGATA
aaacagtggagtctccataactcgaaccttcacgggaacgcaaatttgtt
cgagttatggagtgaGATTTATGAGACACTTTTAACTAAAGGGACTAGAA
AACTCGTTCGAATTAAGGTaacattcgagttgtagaggttcgaattatgg
agactccattgtATTATAATTACACACTTTTCACcaattaaattttattt
attctATGGAAAAAGACTATTTGGAATGATCTGAATAAAATAAATAGAGA
ACGAATACGAATCGATTTGATTGAATGAAGTCTTGTATTCGTTGGCTTCA
GTGTTTAATAATGATTTTATTTTGCCGttattatttttagaatttaatga
aaaaatagtttatttATATTACAGTATTTGAATTGCAATTTGATACATAT
ATTTGATACATTATTAACGC

Coding sequence (CDS) from alignment at scaffold_410:31762..37281+

>TCONS_00064296 ID=TCONS_00064296|Name=TCONS_00064296|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_410:31762..37281+ (Clytia hemisphaerica)
ATGAAGCAAGCGCAAGACGAAAATCGATGTAACATAGATCTATTGAATCA
TTTCTGGTGTATGGTGACGTCACTCTATTTGATTATGCTGGGTGGTGTTC
GAAGTATCAAACCTCTCTCACTTTTCGATACGAAGGGGAAACATGCATTT
ACTTTCGCTTTGTATTCATCACCAGTCCTTTCTAATGAGGTTGATGACAA
AATCAACAAATGTAGAAGAGAGTTTTGTTTGAATGGAATCCAGTGCATCA
TCAAACAACATATTGATCTGACTTTCCAAGATGAACGAGCACGAAATAAC
ACGTCAGACCTCTTGCACACCATGTCTACCATATTTTCACTGACGTCAGC
ATTCCATTTGAGTTGCGAAGATGCTCGACAATTCGCGGCGTGTGAATTGT
ACAGAGTTGGTTTGGATCTAGCGGCTCAAGAGGTTTCCATGGTGATCGAA
GACAAACAAACCTTCTCAACACGAATGATCGACGTTGTTGGTGGACGAAT
CGCTAAAACCTTACTATCTGGTGAAACCCAACATCTTTCGGACTCCTTAA
GTAAATTACCCACAAATATTTCATCATGGCTGGCTAAACTGgagaaaaat
acgaGCAATGTTGCAGAGCTACCCATATCGAAGACCTACTTGCTTTTACA
ATATTTGAACTCACATCTTATTGAACACACGACTAAAGAAGCAAAATTTA
TCAAAGAATTGATCGAATGTCTCAAAGTGTTTGTTTGAATGAAGCAAGCG
CAAGACGAAAATCGATGTAACATAGATCTATTGAATCATTTCTGGTGTAT
GGTGACGTCACTCTATTTGATTATGCTGGGTGGTGTTCGAAGTATCAAAC
CTCTCTCACTTTTCGATACGAAGGGGAAACATGCATTTACTTTCGCTTTG
TATTCATCACCAGTCCTTTCTAATGAGGTTGATGACAAAATCAACAAATG
TAGAAGAGAGTTTTGTTTGAATGGAATCCAGTGCATCATCAAACAACATA
TTGATCTGACTTTCCAAGATGAACGAGCACGAAATAACACGTCAGACCTC
TTGCACACCATGTCTACCATATTTTCACTGACGTCAGCATTCCATTTGAG
TTGCGAAGATGCTCGACAATTCGCGGCGTGTGAATTGTACAGAGTTGGTT
TGGATCTAGCGGCTCAAGAGGTTTCCATGGTGATCGAAGACAAACAAACC
TTCTCAACACGAATGATCGACGTTGTTGGTGGACGAATCGCTAAAACCTT
ACTATCTGGTGAAACCCAACATCTTTCGGACTCCTTAAGTAAATTACCCA
CAAATATTTCATCATGGCTGGCTAAACTGgagaaaaatacgaGCAATGTT
GCAGAGCTACCCATATCGAAGACCTACTTGCTTTTACAATATTTGAACTC
ACATCTTATTGAACACACGACTAAAGAAGCAAAATTTATCAAAGAATTGA
TCGAATGTCTCAAAGTGTTTGTTTGAATGAAGCAAGCGCAAGACGAAAAT
CGATGTAACATAGATCTATTGAATCATTTCTGGTGTATGGTGACGTCACT
CTATTTGATTATGCTGGGTGGTGTTCGAAGTATCAAACCTCTCTCACTTT
TCGATACGAAGGGGAAACATGCATTTACTTTCGCTTTGTATTCATCACCA
GTCCTTTCTAATGAGGTTGATGACAAAATCAACAAATGTAGAAGAGAGTT
TTGTTTGAATGGAATCCAGTGCATCATCAAACAACATATTGATCTGACTT
TCCAAGATGAACGAGCACGAAATAACACGTCAGACCTCTTGCACACCATG
TCTACCATATTTTCACTGACGTCAGCATTCCATTTGAGTTGCGAAGATGC
TCGACAATTCGCGGCGTGTGAATTGTACAGAGTTGGTTTGGATCTAGCGG
CTCAAGAGGTTTCCATGGTGATCGAAGACAAACAAACCTTCTCAACACGA
ATGATCGACGTTGTTGGTGGACGAATCGCTAAAACCTTACTATCTGGTGA
AACCCAACATCTTTCGGACTCCTTAAGTAAATTACCCACAAATATTTCAT
CATGGCTGGCTAAACTGgagaaaaatacgaGCAATGTTGCAGAGCTACCC
ATATCGAAGACCTACTTGCTTTTACAATATTTGAACTCACATCTTATTGA
ACACACGACTAAAGAAGCAAAATTTATCAAAGAATTGATCGAATGTCTCA
AAGTGTTTGTTTGAATGAAGCAAGCGCAAGACGAAAATCGATGTAACATA
GATCTATTGAATCATTTCTGGTGTATGGTGACGTCACTCTATTTGATTAT
GCTGGGTGGTGTTCGAAGTATCAAACCTCTCTCACTTTTCGATACGAAGG
GGAAACATGCATTTACTTTCGCTTTGTATTCATCACCAGTCCTTTCTAAT
GAGGTTGATGACAAAATCAACAAATGTAGAAGAGAGTTTTGTTTGAATGG
AATCCAGTGCATCATCAAACAACATATTGATCTGACTTTCCAAGATGAAC
GAGCACGAAATAACACGTCAGACCTCTTGCACACCATGTCTACCATATTT
TCACTGACGTCAGCATTCCATTTGAGTTGCGAAGATGCTCGACAATTCGC
GGCGTGTGAATTGTACAGAGTTGGTTTGGATCTAGCGGCTCAAGAGGTTT
CCATGGTGATCGAAGACAAACAAACCTTCTCAACACGAATGATCGACGTT
GTTGGTGGACGAATCGCTAAAACCTTACTATCTGGTGAAACCCAACATCT
TTCGGACTCCTTAAGTAAATTACCCACAAATATTTCATCATGGCTGGCTA
AACTGgagaaaaatacgaGCAATGTTGCAGAGCTACCCATATCGAAGACC
TACTTGCTTTTACAATATTTGAACTCACATCTTATTGAACACACGACTAA
AGAAGCAAAATTTATCAAAGAATTGATCGAATGTCTCAAAGTGTTTGTTT
GAATGAAGCAAGCGCAAGACGAAAATCGATGTAACATAGATCTATTGAAT
CATTTCTGGTGTATGGTGACGTCACTCTATTTGATTATGCTGGGTGGTGT
TCGAAGTATCAAACCTCTCTCACTTTTCGATACGAAGGGGAAACATGCAT
TTACTTTCGCTTTGTATTCATCACCAGTCCTTTCTAATGAGGTTGATGAC
AAAATCAACAAATGTAGAAGAGAGTTTTGTTTGAATGGAATCCAGTGCAT
CATCAAACAACATATTGATCTGACTTTCCAAGATGAACGAGCACGAAATA
ACACGTCAGACCTCTTGCACACCATGTCTACCATATTTTCACTGACGTCA
GCATTCCATTTGAGTTGCGAAGATGCTCGACAATTCGCGGCGTGTGAATT
GTACAGAGTTGGTTTGGATCTAGCGGCTCAAGAGGTTTCCATGGTGATCG
AAGACAAACAAACCTTCTCAACACGAATGATCGACGTTGTTGGTGGACGA
ATCGCTAAAACCTTACTATCTGGTGAAACCCAACATCTTTCGGACTCCTT
AAGTAAATTACCCACAAATATTTCATCATGGCTGGCTAAACTGgagaaaa
atacgaGCAATGTTGCAGAGCTACCCATATCGAAGACCTACTTGCTTTTA
CAATATTTGAACTCACATCTTATTGAACACACGACTAAAGAAGCAAAATT
TATCAAAGAATTGATCGAATGTCTCAAAGTGTTTGTTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040314	XLOC_040314	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00064296-protein	TCONS_00064296-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_410	supercontig	scaffold_410:31762..37281 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83617	1.8354	0.310116	0	6.36011	4.33612	6.82546	7.22026	5.14165	5.70381	7.42519	3.9121	7.02703	5.62671	3.96188	5.18603	5.49926	6.61491	4.2363	4.5105	4.48796	3.10852	4.29493	4.79629	13.1393	11.7958	3.02506	2.10154	4.06816	3.7596

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR029257	RAB3GAP2_C

Blast

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BLAST of TCONS_00064296 vs. Swiss-Prot (Human)
Match: RBGPR (Rab3 GTPase-activating protein non-catalytic subunit OS=Homo sapiens GN=RAB3GAP2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.962e-18
Identity = 60/223 (26.91%), Postives = 112/223 (50.22%), Query Frame = 3

Query:  177 SIMKQAQDENRCNIDLLNHFWCMVTSLYLIMLGGVRSIKPLSLFDTKGKHAFTFALYSSPVL-SNEVDDKINKCRREFCLNGIQCIIK-QHIDLTFQDERARNNTSDLLHTMS-TIFSLTSAFHLSCED--ARQFAACELYRVGLDLAAQEVSMVIEDKQTFSTRMIDVVGGRIAKTLLSGETQHLSDSLSKLPTNISSWLAKLEKNTSNVAELPISKTYLLL 830
            SI++ A ++   +  L+ H   + + LY +M   ++++KPLSLFD+KGK+AF   L S  +L S E+D      R++F L  +   ++ QH     +D       +           ++  A HL   +   R+    ELY  G+D   +E  + + DK+  +++++ + G R+A  LL  +T+   + L++LP  + +WL  ++       E+PI+ T  L+
Sbjct: 1139 SIVELALEQKHIHYPLVEHHSILCSILYAVMRFSLKTVKPLSLFDSKGKNAFFKDLTSIQLLPSGEMDPNFISVRQQFLLKVVSAAVQAQHSATKVKDPTEEATPTPFGKDQDWPALAVDLAHHLQVSEDVVRRHYVGELYNYGVDHLGEEAILQVHDKEVLASQLLVLTGQRLAHALLHTQTKEGMELLARLPPTLCTWLKAMDPQDLQNTEVPIATTAKLV 1361

The following BLAST results are available for this feature:

BLAST of TCONS_00064296 vs. Swiss-Prot (Human)

BLAST of TCONS_00064296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RBGPR	2.962e-18	26.91	Rab3 GTPase-activating protein non-catalytic subun...	[more]

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TCONS_00064296 (transcript) - C. hemisphaerica